Rh2CG634300

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000237
Physical Location & Seq
Forward (+)
80614003 .. 80614489
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG634300.1

Sequence Viewer

Length: 465 bp
ATGGAGCAGAGACTTGACCTAAAACGCTGCAGCTACAGCAGCAGCTTACCACAAACCATAGCCAACACGGAAGATATCCTTACAGAAATCCTTGTGCGTTTGCCTGCTCGACCTCTGGTTCGATTCAAATGCGTCTCCAAGCATTGGCTCTCTCTTATCTCTGACCCTAACTTCTGTCATCGCCACACCCTTAGGAACCCCCACTCCATCTCCGCCGTCTTGACTAAATCATCCACTGGCTTGTATTTCGTCCCTCTTGATCTTGATCATGATGTTAGTAGTACTAGTAACCACGGAAACCAAAAGCTATCTGGGTCTGGTAAACCCACCTGCAATCCTCTTAACTTCGTTCCAACCCTATATGACACCGTGATTATCCAGTCCTGCAATGGCCTTTTCTTGTGCTGTCCCAATCCTCCAATAATTAACCGTCCATATTATGTTCTCAATCCCACAACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

8.73

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 60 4.6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 213
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 127
AhlI ACTAGT 1 cut(s) 284
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 3 cut(s) 33, 45, 307
AluI AGCT 3 cut(s) 33, 45, 307
Alw26I GTCTC 2 cut(s) 4, 139
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 4 cut(s) 27, 30, 39, 42
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AxyI CCTNAGG 1 cut(s) 191
BbvI GCAGC 4 cut(s) 14, 42, 51, 54
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 4, 139
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 285, 463
BfmI CTRYAG 2 cut(s) 28, 34
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 4 cut(s) 28, 31, 40, 43
BlsI GCNGC 4 cut(s) 29, 32, 41, 44
BmcAI AGTACT 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 292
BsaXI ACNNNNNCTCC 4 cut(s) 188, 194, 218, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 241, 379
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 2 cut(s) 241, 379
BseXI GCAGC 4 cut(s) 14, 42, 51, 54
BshFI GGCC 1 cut(s) 393
BslFI GGGAC 2 cut(s) 236, 393
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 4, 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 236, 393
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 259, 265
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 393
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 241, 379
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 2 cut(s) 259, 265
Bst4CI ACNGT 2 cut(s) 370, 431
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 2 cut(s) 262, 268
BstMAI GTCTC 2 cut(s) 4, 139
BstMBI GATC 2 cut(s) 259, 265
BstMWI GCNNNNNNNGC 2 cut(s) 36, 39
BstSFI CTRYAG 2 cut(s) 28, 34
BstV1I GCAGC 4 cut(s) 14, 42, 51, 54
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 268
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 33, 45, 62, 148, 240, 307, 393
CviKI_1 RGCY 7 cut(s) 33, 45, 62, 148, 240, 307, 393
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 261, 267
DpnII GATC 2 cut(s) 259, 265
EciI GGCGGA 1 cut(s) 202
Eco32I GATATC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 191
EcoRV GATATC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 1 cut(s) 272
FaiI YATR 6 cut(s) 59, 270, 361, 363, 436, 441
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 2 cut(s) 236, 393
FatI CATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 28, 31, 40, 43
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 4 cut(s) 28, 31, 40, 43
FspBI CTAG 2 cut(s) 285, 463
GluI GCNGC 4 cut(s) 28, 31, 40, 43
HaeIII GGCC 1 cut(s) 393
HgaI GACGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 272
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 220, 257, 263, 269
Hpy8I GTNNAC 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 370, 431
HpyCH4V TGCA 3 cut(s) 30, 333, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 39
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 259, 265
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 101, 117, 222, 297, 303, 343, 392, 397
Lsp1109I GCAGC 4 cut(s) 14, 42, 51, 54
MaeI CTAG 2 cut(s) 285, 463
MaeIII GTNAC 1 cut(s) 287
MalI GATC 2 cut(s) 261, 267
MboI GATC 2 cut(s) 259, 265
MboII GAAGA 1 cut(s) 83
MluCI AATT 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 4 cut(s) 123, 264, 348, 426
MseI TTAA 2 cut(s) 342, 426
MwoI GCNNNNNNNGC 2 cut(s) 36, 39
NdeII GATC 2 cut(s) 259, 265
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 197
PagI TCATGA 1 cut(s) 268
PaqCI CACCTGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 29, 32, 41, 44
PspN4I GGNNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 32
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 342, 426
SatI GCNGC 4 cut(s) 28, 31, 40, 43
Sau3AI GATC 2 cut(s) 259, 265
ScaI AGTACT 1 cut(s) 283
SetI ASST 6 cut(s) 21, 35, 47, 115, 309, 332
SfcI CTRYAG 2 cut(s) 28, 34
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 1 cut(s) 423
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 285, 463
TaaI ACNGT 2 cut(s) 370, 431
TaqI TCGA 2 cut(s) 109, 121
TasI AATT 1 cut(s) 423
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 342, 426
Tru9I TTAA 2 cut(s) 342, 426
TscAI CASTG 1 cut(s) 241
TseI GCWGC 4 cut(s) 27, 30, 39, 42
TspGWI ACGGA 2 cut(s) 83, 309
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 2 cut(s) 308, 386
XspI CTAG 2 cut(s) 285, 463
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.