Rh2AG660200

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000237
Physical Location & Seq
Forward (+)
87599657 .. 87600143
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG660200.1

Sequence Viewer

Length: 465 bp
ATGGAGCAGAGACTTGACCTAAAACGCTGCAGCTCACCACAAACCATAGCCAACACGGAAGATATCCTTACAGAAATCCTTGTGCGTTTGCCTGCTCGACCTCTGGTTCGATTCAAATGCGTGTCCAAGCATTGGCTCTCTCTTATCTCTGACCCTAACTTCTGTCATTGCCACACCCTTAGGAACCCCCACTCCTCCATCTCCACCGTCTTTACTAAATCATCCACTGGCTTGTATTTCGTCCCTCTTGATCTTGATCATGATGTTAGTAGTACTAGTAACCACGGAAACCAAAAGCTATCTGGGTCTGCAGGGTCTGGTAAACCCACCTGCAATCCTCTTAACTTCGTTCCAACCCTATATGACACCGTGATTATCCAGTCCTGCAATGGCCTTTTCTTGTGCTGTCCCAATCCTCCAATAATTAACCGTCCATATTATGTTCTCAATCCCACAACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

8.46

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 55 7e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 132
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 115
AhlI ACTAGT 1 cut(s) 275
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 33, 298
AluI AGCT 2 cut(s) 33, 298
Alw26I GTCTC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 27, 30
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AsuHPI GGTGA 1 cut(s) 27
AxyI CCTNAGG 1 cut(s) 179
BbvI GCAGC 2 cut(s) 14, 42
BccI CCATC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 4
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 2 cut(s) 276, 463
BfmI CTRYAG 2 cut(s) 28, 309
BfuAI ACCTGC 1 cut(s) 338
BisI GCNGC 2 cut(s) 28, 31
BlsI GCNGC 2 cut(s) 29, 32
BmcAI AGTACT 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 232, 379
Bse21I CCTNAGG 1 cut(s) 179
Bse3DI GCAATG 2 cut(s) 166, 394
Bse8I GATNNNNATC 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 2 cut(s) 166, 394
BseNI ACTGG 2 cut(s) 232, 379
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 14, 42
BshFI GGCC 1 cut(s) 393
BslFI GGGAC 2 cut(s) 227, 393
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 4
BsmFI GGGAC 2 cut(s) 227, 393
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 250, 256
BspANI GGCC 1 cut(s) 393
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 185
BspMAI CTGCAG 2 cut(s) 32, 313
BspMI ACCTGC 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 166, 394
BsrI ACTGG 2 cut(s) 232, 379
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 250, 256
Bst4CI ACNGT 3 cut(s) 208, 370, 431
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 2 cut(s) 253, 259
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 250, 256
BstSFI CTRYAG 2 cut(s) 28, 309
BstV1I GCAGC 2 cut(s) 14, 42
Bsu36I CCTNAGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 1 cut(s) 259
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 260
CviJI RGCY 6 cut(s) 33, 50, 136, 231, 298, 393
CviKI_1 RGCY 6 cut(s) 33, 50, 136, 231, 298, 393
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 179
DpnI GATC 2 cut(s) 252, 258
DpnII GATC 2 cut(s) 250, 256
Eco32I GATATC 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 179
EcoRV GATATC 1 cut(s) 64
FaeI CATG 1 cut(s) 263
FaiI YATR 6 cut(s) 47, 261, 361, 363, 436, 441
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 2 cut(s) 227, 393
FatI CATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 28, 31
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 28, 31
FspBI CTAG 2 cut(s) 276, 463
GluI GCNGC 2 cut(s) 28, 31
HaeIII GGCC 1 cut(s) 393
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 248, 254, 260
Hpy8I GTNNAC 1 cut(s) 323
HpyCH4III ACNGT 3 cut(s) 208, 370, 431
HpyCH4V TGCA 4 cut(s) 30, 311, 333, 387
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 250, 256
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 9 cut(s) 89, 105, 213, 288, 297, 303, 343, 392, 397
Lsp1109I GCAGC 2 cut(s) 14, 42
MaeI CTAG 2 cut(s) 276, 463
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 252, 258
MboI GATC 2 cut(s) 250, 256
MboII GAAGA 1 cut(s) 71
MluCI AATT 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 5 cut(s) 111, 205, 255, 348, 426
MseI TTAA 2 cut(s) 342, 426
NdeII GATC 2 cut(s) 250, 256
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 185
PagI TCATGA 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 2 cut(s) 29, 32
PspN4I GGNNCC 1 cut(s) 185
PstI CTGCAG 2 cut(s) 32, 313
PstNI CAGNNNCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 342, 426
SatI GCNGC 2 cut(s) 28, 31
Sau3AI GATC 2 cut(s) 250, 256
ScaI AGTACT 1 cut(s) 274
SetI ASST 5 cut(s) 21, 35, 103, 300, 332
SfcI CTRYAG 2 cut(s) 28, 309
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 1 cut(s) 423
SspMI CTAG 2 cut(s) 276, 463
TaaI ACNGT 3 cut(s) 208, 370, 431
TaqI TCGA 2 cut(s) 97, 109
TasI AATT 1 cut(s) 423
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 342, 426
Tru9I TTAA 2 cut(s) 342, 426
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 27, 30
TspGWI ACGGA 2 cut(s) 71, 300
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 132
XcmI CCANNNNNNNNNTGG 2 cut(s) 299, 386
XspI CTAG 2 cut(s) 276, 463
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.