Rroxscaffold_3G00220050

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000237
Physical Location & Seq
Reverse (-)
2230622 .. 2231266
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220050.1

Sequence Viewer

Length: 645 bp
ATGGTTTCGTCAGCAGCAGAAATTGTGGCCTGCGACGAAGAATTCCACCCTAACCCCAAGGTCTCCGCTTTCTTCGTTGACGGTAGAGAGGGACTTGACTTCATATCTCTATGTAACAATAAAACCTCACCTAGGTCTCCCACCGAACCTCTCAGTTTCATCCCAGACCCGGACAACATCAGAATTTTGCAGTCACGCAACGGATTGCTCTTGTGTGAACCTAAATCCAACATCGAGTATTATGGTTTCAATCCATCAGCAACTGAATCTGAACCCAGCAACATCTATTATGTTGTCAATCCAAAAACTAGACAGTGCTCAGAGCTCACTCTTCCATCTGCTCCCACTAATTCCAGACGTTATATTATACGTTTGTATGTTGATTTGGCTTTTGACCCTTCCAAATCGCTTCATTACAAGGTGTTTGTCATCGGAAAGCGTGCCATTTTTTCAGATTTCTACAAATGTATTTGGATATATTCTTCCGAGACTCGAAGTTGGAGGCTTCATGAGCCTACCGGAGAAGGCTGGCCGGATTTGATTGCATCCGACGGAGGGCCAGTTCTCTGCAATGGCACAATTAATTGGATGGACTTCTGGACTGGCAGCTTTGTTCACTATGACATAGAGAAAGACAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

214

Amino Acids

24.34

Weight (kDa)

5.12

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 530
AcsI RAATTY 2 cut(s) 41, 183
AfiI CCNNNNNNNGG 3 cut(s) 132, 169, 555
AgsI TTSAA 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 2 cut(s) 325, 609
AluI AGCT 2 cut(s) 325, 609
Alw21I GWGCWC 2 cut(s) 320, 327
Alw26I GTCTC 3 cut(s) 67, 141, 482
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 3 cut(s) 27, 530, 557
ApeKI GCWGC 2 cut(s) 14, 606
ApoI RAATTY 2 cut(s) 41, 183
AseI ATTAAT 1 cut(s) 582
AspA2I CCTAGG 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 557
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 120
AvrII CCTAGG 1 cut(s) 131
BanII GRGCYC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 320, 327
BbvI GCAGC 2 cut(s) 26, 618
BccI CCATC 3 cut(s) 262, 343, 583
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 67, 141, 482
BfaI CTAG 2 cut(s) 132, 309
BisI GCNGC 2 cut(s) 15, 607
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 2 cut(s) 16, 608
Bme1390I CCNGG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 554
BpuMI CCSGG 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 67, 141
BsaJI CCNNGG 2 cut(s) 57, 131
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 169, 555
Bse1I ACTGG 2 cut(s) 560, 607
Bse3DI GCAATG 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 57, 131
BseGI GGATG 3 cut(s) 159, 545, 594
BseLI CCNNNNNNNGG 3 cut(s) 132, 169, 555
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 2 cut(s) 166, 333
BseNI ACTGG 2 cut(s) 560, 607
BseXI GCAGC 2 cut(s) 26, 618
BseYI CCCAGC 1 cut(s) 275
BshFI GGCC 3 cut(s) 29, 532, 559
BsiHKAI GWGCWC 2 cut(s) 320, 327
BsiSI CCGG 3 cut(s) 170, 519, 533
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 3 cut(s) 132, 169, 555
BsmAI GTCTC 3 cut(s) 67, 141, 482
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 3 cut(s) 29, 532, 559
Bso31I GGTCTC 2 cut(s) 67, 141
Bsp1286I GDGCHC 2 cut(s) 320, 327
BspACI CCGC 1 cut(s) 66
BspANI GGCC 3 cut(s) 29, 532, 559
BspCNI CTCAG 2 cut(s) 165, 332
BspHI TCATGA 1 cut(s) 508
BspTNI GGTCTC 2 cut(s) 67, 141
BsrDI GCAATG 1 cut(s) 577
BsrI ACTGG 2 cut(s) 560, 607
BssECI CCNNGG 2 cut(s) 57, 131
BssT1I CCWWGG 2 cut(s) 57, 131
Bst4CI ACNGT 3 cut(s) 83, 315, 638
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 31, 441, 530
BstDEI CTNAG 2 cut(s) 152, 319
BstENI CCTNNNNNAGG 1 cut(s) 130
BstF5I GGATG 3 cut(s) 159, 545, 594
BstMAI GTCTC 3 cut(s) 67, 141, 482
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 26, 618
BsuRI GGCC 3 cut(s) 29, 532, 559
BtsCI GGATG 3 cut(s) 159, 545, 594
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 3 cut(s) 31, 441, 530
CaiI CAGNNNCTG 1 cut(s) 263
CciI TCATGA 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 557
CviAII CATG 1 cut(s) 509
CviJI RGCY 9 cut(s) 29, 325, 389, 505, 514, 528, 532, 559, 609
CviKI_1 RGCY 9 cut(s) 29, 325, 389, 505, 514, 528, 532, 559, 609
DdeI CTNAG 2 cut(s) 152, 319
EaeI YGGCCR 1 cut(s) 530
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 57, 131
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 2 cut(s) 67, 141
Eco53kI GAGCTC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 57, 131
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 2 cut(s) 57, 131
FaeI CATG 1 cut(s) 512
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 15, 607
FokI GGATG 3 cut(s) 146, 532, 601
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 15, 607
FspBI CTAG 2 cut(s) 132, 309
GluI GCNGC 2 cut(s) 15, 607
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 3 cut(s) 29, 532, 559
HapII CCGG 3 cut(s) 170, 519, 533
Hin1II CATG 1 cut(s) 512
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 266, 490
HpaII CCGG 3 cut(s) 170, 519, 533
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 3 cut(s) 79, 218, 616
Hpy188I TCNGA 7 cut(s) 182, 271, 322, 434, 454, 487, 550
Hpy188III TCNNGA 3 cut(s) 354, 509, 598
Hpy8I GTNNAC 3 cut(s) 79, 218, 616
Hpy99I CGWCG 2 cut(s) 38, 554
HpyAV CCTTC 2 cut(s) 408, 518
HpyCH4III ACNGT 3 cut(s) 83, 315, 638
HpyCH4IV ACGT 2 cut(s) 358, 370
HpyCH4V TGCA 3 cut(s) 190, 545, 570
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 2 cut(s) 152, 319
HpySE526I ACGT 2 cut(s) 358, 370
Hsp92II CATG 1 cut(s) 512
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 2 cut(s) 26, 618
LweI GCATC 1 cut(s) 554
MaeI CTAG 2 cut(s) 132, 309
MaeII ACGT 2 cut(s) 358, 370
MaeIII GTNAC 2 cut(s) 113, 192
MboII GAAGA 4 cut(s) 50, 64, 323, 474
MhlI GDGCHC 2 cut(s) 320, 327
MluCI AATT 6 cut(s) 21, 41, 183, 349, 579, 583
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 3 cut(s) 252, 479, 573
MnlI CCTC 5 cut(s) 82, 136, 159, 495, 548
MseI TTAA 1 cut(s) 582
MspI CCGG 3 cut(s) 170, 519, 533
MspR9I CCNGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 511
NciI CCSGG 1 cut(s) 170
NlaIII CATG 1 cut(s) 512
NmuCI GTSAC 1 cut(s) 192
PagI TCATGA 1 cut(s) 508
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 16, 608
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 557
PstNI CAGNNNCTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 2 cut(s) 15, 607
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 320, 327
SfaNI GCATC 1 cut(s) 554
Sse9I AATT 6 cut(s) 21, 41, 183, 349, 579, 583
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 132, 309
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 57, 131
TaaI ACNGT 3 cut(s) 83, 315, 638
TaiI ACGT 2 cut(s) 361, 373
TaqI TCGA 2 cut(s) 234, 493
TasI AATT 6 cut(s) 21, 41, 183, 349, 579, 583
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 320
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 2 cut(s) 14, 606
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 4 cut(s) 91, 148, 401, 497
TspGWI ACGGA 2 cut(s) 216, 567
TspRI CASTG 1 cut(s) 320
VspI ATTAAT 1 cut(s) 582
XagI CCTNNNNNAGG 1 cut(s) 130
XapI RAATTY 2 cut(s) 41, 183
XmaJI CCTAGG 1 cut(s) 131
XspI CTAG 2 cut(s) 132, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.