Rroxscaffold_5G00340850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000237
Physical Location & Seq
Forward (+)
9347799 .. 9348167
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340850.1

Sequence Viewer

Length: 243 bp
ATGGACAACTATCAAACTGATTACGGGATGATTGCTATTCTTCTGGCCTTGGTGGTGGTCGGTTCGGTCCTTTTCCTGCCCCTGCTCATCGGTCCTCTGCAGCCCCCGTCCTTCGCCGTTATGCTGATAATCCCGGTGGTTCTGGTGGCTGCGTTGATCTTCCTCCACAAAGCCTCGAATGATGTGCTTTCTCTACTCATATTGTGGCGTTGGCCATCTATGGATGAAAATGGTTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.8

Weight (kDa)

4.72

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 212
AoxI GGCC 2 cut(s) 45, 212
ApeKI GCWGC 2 cut(s) 100, 149
AspS9I GGNCC 2 cut(s) 67, 92
AsuC2I CCSGG 1 cut(s) 134
AvaII GGWCC 2 cut(s) 67, 92
BalI TGGCCA 1 cut(s) 214
BbvI GCAGC 2 cut(s) 112, 136
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BcnI CCSGG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 101, 150
BlsI GCNGC 2 cut(s) 102, 151
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 2 cut(s) 67, 92
BmgT120I GGNCC 2 cut(s) 67, 92
BmrFI CCNGG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 33, 229
BseXI GCAGC 2 cut(s) 112, 136
BshFI GGCC 2 cut(s) 47, 214
BsiSI CCGG 1 cut(s) 134
BsnI GGCC 2 cut(s) 47, 214
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 2 cut(s) 47, 214
BspMAI CTGCAG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 33, 229
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 112, 136
BsuRI GGCC 2 cut(s) 47, 214
BtsCI GGATG 2 cut(s) 33, 229
Cfr13I GGNCC 2 cut(s) 67, 92
CviJI RGCY 5 cut(s) 47, 103, 149, 173, 214
CviKI_1 RGCY 5 cut(s) 47, 103, 149, 173, 214
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 67, 92
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaiI YATR 3 cut(s) 122, 200, 221
Fnu4HI GCNGC 2 cut(s) 101, 150
FokI GGATG 2 cut(s) 40, 236
Fsp4HI GCNGC 2 cut(s) 101, 150
GluI GCNGC 2 cut(s) 101, 150
HaeIII GGCC 2 cut(s) 47, 214
HapII CCGG 1 cut(s) 134
HpaII CCGG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 5 cut(s) 29, 89, 95, 128, 147
Lsp1109I GCAGC 2 cut(s) 112, 136
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 32, 151
MlsI TGGCCA 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 214
MnlI CCTC 3 cut(s) 105, 173, 184
Mox20I TGGCCA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 214
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 134
NciI CCSGG 1 cut(s) 134
NdeII GATC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 102, 151
PspPI GGNCC 2 cut(s) 67, 92
PstI CTGCAG 1 cut(s) 102
SatI GCNGC 2 cut(s) 101, 150
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 67, 92
ScrFI CCNGG 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 98
SinI GGWCC 2 cut(s) 67, 92
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 48
TaqI TCGA 1 cut(s) 176
TaqII GACCGA 2 cut(s) 55, 80
TseI GCWGC 2 cut(s) 100, 149
TspDTI ATGAA 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 67, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.