FvH4_6g52871

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Reverse (-)
38843402 .. 38844164
763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52871.t1

Sequence Viewer

Length: 618 bp
ATGACGGGGTTGTTGTTAGCAAACATTGGTAGTAGAAAAATAGATAGCAATGTTATTCGAGGTGGCCTCTTCTTATGTACTACATTCTATGTTCTCAATCCCACAACCAACCAGTTCTCCACAATCATTATTCCAGCTGTTGCTGCTGCTATTTCTGGTTCACCATGTATCCTCCTCGGTTACGCTTTGGCTTTCGACCCTTCCAAATCACCTCATTACAAGGTGTTCTTCCTTCAGACCATTACCGAACTTCATTGGATAGGTTTGTATAATGAGATCGGGTACTACCACATAGATGATGAGAGTGTCAGAGATGTTTATTATCCTCCTCCTCATCCTCCCATGAAATGTGAGGTGACTCAGCTGAGAATGTTCGGATATTTTCAGGAGTCTCATTGTGGAAGCCATTTGCATCTTATTAACATCTATGTATCTCATTTTACTCGATTCGAGGTGTTTGAGATGGGGAGAGACTATTCTGGTTGGTTCCTCAAGTACCATGTTGATCTTGATCCCCAGTTAACTGGCTTCCCGTGGCTCGGATGGTGTCGATGTACTGTTCTCTTTCTTTTTCCCGAGGAAGGTGAAGGAGAGGAAAGTTCGTCTGATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

206

Amino Acids

23.42

Weight (kDa)

5.36

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 616
AclWI GGATC 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 4 cut(s) 79, 284, 497, 556
AfiI CCNNNNNNNGG 2 cut(s) 539, 581
AluBI AGCT 2 cut(s) 137, 364
AluI AGCT 2 cut(s) 137, 364
Alw26I GTCTC 2 cut(s) 396, 465
AlwI GGATC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 575
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 143, 146
AsuHPI GGTGA 4 cut(s) 153, 201, 367, 596
AvaI CYCGRG 1 cut(s) 575
BbvI GCAGC 2 cut(s) 130, 133
BccI CCATC 2 cut(s) 457, 537
BciVI GTATCC 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 396, 465
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 2 cut(s) 144, 147
BlsI GCNGC 2 cut(s) 145, 148
BmeT110I CYCGRG 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 511
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpuEI CTTGAG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 175, 533, 576
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 581
Bse1I ACTGG 3 cut(s) 112, 517, 529
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 510
BseDI CCNNGG 3 cut(s) 175, 533, 576
BseGI GGATG 2 cut(s) 334, 548
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 539, 581
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 356, 374
BseNI ACTGG 3 cut(s) 112, 517, 529
BseRI GAGGAG 3 cut(s) 164, 318, 321
BseXI GCAGC 2 cut(s) 130, 133
BshFI GGCC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 575
BslI CCNNNNNNNGG 2 cut(s) 539, 581
BsmAI GTCTC 2 cut(s) 396, 465
BsnI GGCC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 575
Bsp143I GATC 4 cut(s) 276, 505, 511, 607
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 357, 373
BspLI GGNNCC 1 cut(s) 488
BspPI GGATC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 3 cut(s) 112, 517, 529
BssECI CCNNGG 3 cut(s) 175, 533, 576
BssMI GATC 4 cut(s) 276, 505, 511, 607
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 360, 365
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 2 cut(s) 334, 548
BstKTI GATC 4 cut(s) 279, 508, 514, 610
BstMAI GTCTC 2 cut(s) 396, 465
BstMBI GATC 4 cut(s) 276, 505, 511, 607
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 130, 133
BstXI CCANNNNNNTGG 1 cut(s) 524
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 2 cut(s) 334, 548
Csp6I GTAC 4 cut(s) 78, 283, 496, 555
CviAII CATG 3 cut(s) 165, 343, 500
CviJI RGCY 7 cut(s) 66, 137, 191, 364, 405, 528, 538
CviKI_1 RGCY 7 cut(s) 66, 137, 191, 364, 405, 528, 538
CviQI GTAC 4 cut(s) 78, 283, 496, 555
DdeI CTNAG 2 cut(s) 360, 365
DpnI GATC 4 cut(s) 278, 507, 513, 609
DpnII GATC 4 cut(s) 276, 505, 511, 607
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 575
FaeI CATG 3 cut(s) 168, 346, 503
FaiI YATR 9 cut(s) 76, 90, 166, 270, 293, 344, 429, 501, 616
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 3 cut(s) 164, 342, 499
Fnu4HI GCNGC 2 cut(s) 144, 147
FokI GGATG 2 cut(s) 321, 555
Fsp4HI GCNGC 2 cut(s) 144, 147
GluI GCNGC 2 cut(s) 144, 147
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 3 cut(s) 168, 346, 503
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 3 cut(s) 358, 389, 447
HpaI GTTAAC 1 cut(s) 522
HphI GGTGA 4 cut(s) 153, 201, 367, 596
Hpy166II GTNNAC 2 cut(s) 161, 522
Hpy188I TCNGA 5 cut(s) 237, 311, 377, 542, 607
Hpy188III TCNNGA 3 cut(s) 386, 509, 575
Hpy8I GTNNAC 2 cut(s) 161, 522
HpyAV CCTTC 4 cut(s) 210, 242, 575, 581
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4V TGCA 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 360, 365
Hsp92II CATG 3 cut(s) 168, 346, 503
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 4 cut(s) 276, 505, 511, 607
LpnPI CCDG 7 cut(s) 125, 141, 147, 371, 465, 510, 530
Lsp1109I GCAGC 2 cut(s) 130, 133
LweI GCATC 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 179, 355
MalI GATC 4 cut(s) 278, 507, 513, 609
MboI GATC 4 cut(s) 276, 505, 511, 607
MboII GAAGA 2 cut(s) 61, 220
MlyI GAGTC 2 cut(s) 352, 398
MseI TTAA 2 cut(s) 420, 521
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 2 cut(s) 137, 364
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 4 cut(s) 276, 505, 511, 607
NlaIII CATG 3 cut(s) 168, 346, 503
NlaIV GGNNCC 1 cut(s) 488
NmuCI GTSAC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 447
PkrI GCNGC 2 cut(s) 145, 148
PleI GAGTC 2 cut(s) 352, 397
PpsI GAGTC 2 cut(s) 352, 397
PsiI TTATAA 1 cut(s) 616
PspN4I GGNNCC 1 cut(s) 488
PvuII CAGCTG 2 cut(s) 137, 364
RsaI GTAC 4 cut(s) 79, 284, 497, 556
RsaNI GTAC 4 cut(s) 78, 283, 496, 555
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 2 cut(s) 420, 521
SatI GCNGC 2 cut(s) 144, 147
Sau3AI GATC 4 cut(s) 276, 505, 511, 607
SchI GAGTC 2 cut(s) 352, 398
SetI ASST 9 cut(s) 64, 139, 214, 225, 265, 357, 366, 456, 586
SfaNI GCATC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
TaaI ACNGT 1 cut(s) 559
TaqI TCGA 5 cut(s) 58, 195, 445, 450, 550
TatI WGTACW 2 cut(s) 77, 554
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 2 cut(s) 420, 521
Tru9I TTAA 2 cut(s) 420, 521
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 143, 146
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 242, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.