Rorug02G0577800

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000237
Physical Location & Seq
Reverse (-)
70160617 .. 70162118
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0577800.1

Sequence Viewer

Length: 1155 bp
ATGAACACCGATGAAAAGAACAAAAAGGTTCTCTCTCGCTTAAGGAGATCATCCATAGAGAGCACTATTCCTCAATTTACAAAGCTCACTATTGAGGACGATGAGAAGGATGATGTAGAGGAAGACATCTCTGAAGACGATGAACAAGGTAATGCATATGAGTTCTGGTTCTTTGAAGGTGATGAAGACTCAGACAGCGAGATTGAGAGGGATGATGAAGGTTTTCCCATTCCTCATGAAGATTTTCCATGCCTTCACCCACTTACAGACCCATTTGTTATCAGCAAACTTGAGAGAGACAAACATTTGAAAAGCAAGGAAGATATCCTCAACTCCCTAGCAGACCAGCCACAAACCACCACTGATACAGATGGTTTGTCCCTAAAGCAACTAAAAAAAATAATGCAGAGAGTAGCTACACAGGTTGCTGGGAGGTCGAATCACTATCTCGCGAGAAAAAACATGCACGTGAACAAGCGATGGCTTCAGTATGCATATACTAATTTGTTCAAAACTGATGCGGTTGTTGATGAGATATTGGACTCTGCATGTGTACTTATTGGTTGTACTCGGAGTAACTTGAGTATATTGAGCTCTGACAAAGGCAAGAAACCCAGATTTATTTTAGTTGTTGAGAAGGACACAGTTTTTCAGAGATTGGCTAAATCAAAGCTTCAGGATCATTTCCAGTGCATCATCATGACCGGCTGCGGACAACCAAGTATTGCGGCTCGAATATTCTTGAAGAAGATGGCCAACGCTTTGGATATTCTTGTGCTGGTCCTTACGGATAGCAATCCTCATGGACTTGAAATTTTTTTCACATACTTGTACGGATCCATAAGCATGGCCTACAATTCTAGACATCTAAGAACGAGAGGCATAAAGTGGTTGGGCGTGTCACCTCAAGATTTGATTGATTTGAGGAGTGATGAGATTCAGTTGTATGGTGAAAACGGTGGAATTCGGTTTGAAAGGTTGGGCAAAGAGGATTTGAAGAAGAAAGAAGAACTTTTGGAAAGAGACTTTGTGAAGGAAAATTTGGCATGGAGAAAGATGCTGGAACAAATGACCTATCGTGCAGAAATTGAGATACTTTCCTCGTATGAGTTTGAATATTTGTCAAAGTTTATCTTCAAAAAAATTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

384

Amino Acids

44.43

Weight (kDa)

5.4

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 150 - 196 3.8e-06 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 207 - 381 3.1e-43 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 521, 711, 728
AclWI GGATC 3 cut(s) 687, 831, 844
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 3 cut(s) 813, 963, 1039
AcuI CTGAAG 3 cut(s) 153, 470, 659
AcvI CACGTG 1 cut(s) 469
AfaI GTAC 3 cut(s) 555, 568, 833
AflII CTTAAG 1 cut(s) 40
AgsI TTSAA 9 cut(s) 176, 310, 511, 745, 812, 974, 997, 1115, 1138
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AluBI AGCT 4 cut(s) 85, 416, 594, 673
AluI AGCT 4 cut(s) 85, 416, 594, 673
Alw21I GWGCWC 2 cut(s) 65, 596
Alw26I GTCTC 2 cut(s) 291, 1017
AlwI GGATC 3 cut(s) 687, 831, 844
AoxI GGCC 2 cut(s) 753, 849
ApeKI GCWGC 1 cut(s) 708
ApoI RAATTY 3 cut(s) 813, 963, 1039
Asp700I GAANNNNTTC 2 cut(s) 222, 243
AspS9I GGNCC 1 cut(s) 781
AsuHPI GGTGA 4 cut(s) 191, 248, 894, 962
AvaII GGWCC 1 cut(s) 781
BalI TGGCCA 1 cut(s) 755
BamHI GGATCC 1 cut(s) 836
BanII GRGCYC 1 cut(s) 596
BbrPI CACGTG 1 cut(s) 469
BbsI GAAGAC 3 cut(s) 129, 141, 192
Bbv12I GWGCWC 2 cut(s) 65, 596
BbvI GCAGC 1 cut(s) 695
BccI CCATC 3 cut(s) 365, 474, 745
BcoDI GTCTC 2 cut(s) 291, 1017
BfaI CTAG 2 cut(s) 338, 861
BfrI CTTAAG 1 cut(s) 40
BisI GCNGC 2 cut(s) 709, 729
BlsI GCNGC 2 cut(s) 710, 730
Bme18I GGWCC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 1 cut(s) 838
BmsI GCATC 3 cut(s) 508, 702, 1047
BpiI GAAGAC 3 cut(s) 129, 141, 192
BpuEI CTTGAG 3 cut(s) 311, 601, 891
BsaAI YACGTR 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 795
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 795
BseGI GGATG 3 cut(s) 50, 115, 217
BseJI GATNNNNATC 1 cut(s) 795
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 1 cut(s) 940
BseXI GCAGC 1 cut(s) 695
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 1101
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 755, 851
BsiHKAI GWGCWC 2 cut(s) 65, 596
BsiSI CCGG 1 cut(s) 705
BslFI GGGAC 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 291, 1017
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 755, 851
Bsp1286I GDGCHC 2 cut(s) 65, 596
Bsp143I GATC 3 cut(s) 47, 679, 836
Bsp68I TCGCGA 1 cut(s) 452
BspACI CCGC 3 cut(s) 521, 711, 728
BspANI GGCC 2 cut(s) 755, 851
BspCNI CTCAG 1 cut(s) 203
BspFNI CGCG 1 cut(s) 452
BspHI TCATGA 2 cut(s) 235, 699
BspLI GGNNCC 1 cut(s) 838
BspPI GGATC 3 cut(s) 687, 831, 844
BspTI CTTAAG 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 704
BsrI ACTGG 1 cut(s) 688
BssAI RCCGGY 1 cut(s) 704
BssMI GATC 3 cut(s) 47, 679, 836
Bst4CI ACNGT 2 cut(s) 646, 959
BstAFI CTTAAG 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 190, 869
BstF5I GGATG 3 cut(s) 50, 115, 217
BstFNI CGCG 1 cut(s) 452
BstKTI GATC 3 cut(s) 50, 682, 839
BstMAI GTCTC 2 cut(s) 291, 1017
BstMBI GATC 3 cut(s) 47, 679, 836
BstNSI RCATGY 2 cut(s) 466, 552
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 3 cut(s) 129, 141, 192
BstX2I RGATCY 1 cut(s) 836
BstXI CCANNNNNNTGG 2 cut(s) 763, 847
BstYI RGATCY 1 cut(s) 836
BsuRI GGCC 2 cut(s) 755, 851
BtgZI GCGATG 1 cut(s) 493
BtsCI GGATG 3 cut(s) 50, 115, 217
BtsIMutI CAGTG 2 cut(s) 360, 695
BtuMI TCGCGA 1 cut(s) 452
CciI TCATGA 2 cut(s) 235, 699
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 1 cut(s) 781
Csp6I GTAC 3 cut(s) 554, 567, 832
CviAII CATG 8 cut(s) 236, 249, 463, 549, 700, 803, 847, 1047
CviQI GTAC 3 cut(s) 554, 567, 832
DdeI CTNAG 2 cut(s) 190, 869
DpnI GATC 3 cut(s) 49, 681, 838
DpnII GATC 3 cut(s) 47, 679, 836
EaeI YGGCCR 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 596
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 594
Eco57I CTGAAG 3 cut(s) 153, 470, 659
Eco72I CACGTG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 963
EcoRV GATATC 1 cut(s) 325
EcoT22I ATGCAT 2 cut(s) 157, 496
EcoT38I GRGCYC 1 cut(s) 596
FaeI CATG 8 cut(s) 239, 252, 466, 552, 703, 806, 850, 1050
FalI AAGNNNNNCTT 4 cut(s) 996, 1028, 1118, 1150
FaqI GGGAC 1 cut(s) 364
FatI CATG 8 cut(s) 235, 248, 462, 548, 699, 802, 846, 1046
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 709, 729
FokI GGATG 3 cut(s) 37, 122, 224
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 2 cut(s) 709, 729
FspBI CTAG 2 cut(s) 338, 861
GluI GCNGC 2 cut(s) 709, 729
GsaI CCCAGC 1 cut(s) 432
HaeIII GGCC 2 cut(s) 755, 851
HapII CCGG 1 cut(s) 705
Hin1II CATG 8 cut(s) 239, 252, 466, 552, 703, 806, 850, 1050
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 4 cut(s) 188, 439, 542, 937
HpaII CCGG 1 cut(s) 705
HphI GGTGA 4 cut(s) 191, 248, 894, 962
Hpy166II GTNNAC 2 cut(s) 472, 554
Hpy188I TCNGA 5 cut(s) 133, 193, 573, 598, 654
Hpy188III TCNNGA 7 cut(s) 236, 451, 677, 700, 742, 861, 908
Hpy8I GTNNAC 2 cut(s) 472, 554
HpyAV CCTTC 6 cut(s) 100, 170, 212, 263, 631, 1027
HpyCH4III ACNGT 2 cut(s) 646, 959
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 8 cut(s) 155, 406, 466, 494, 548, 693, 1082, 1148
HpyF3I CTNAG 2 cut(s) 190, 869
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 8 cut(s) 239, 252, 466, 552, 703, 806, 850, 1050
Kzo9I GATC 3 cut(s) 47, 679, 836
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 3 cut(s) 508, 702, 1047
MaeI CTAG 2 cut(s) 338, 861
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 575, 900
MalI GATC 3 cut(s) 49, 681, 838
MboI GATC 3 cut(s) 47, 679, 836
MflI RGATCY 1 cut(s) 836
MhlI GDGCHC 2 cut(s) 65, 596
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 8 cut(s) 74, 502, 813, 856, 963, 1039, 1086, 1143
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 2 cut(s) 182, 536
Mox20I TGGCCA 1 cut(s) 755
Mph1103I ATGCAT 2 cut(s) 157, 496
MroXI GAANNNNTTC 2 cut(s) 222, 243
MscI TGGCCA 1 cut(s) 755
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 3 cut(s) 467, 698, 845
Msp20I TGGCCA 1 cut(s) 755
MspCI CTTAAG 1 cut(s) 40
MspI CCGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 452
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 47, 679, 836
NlaIII CATG 8 cut(s) 239, 252, 466, 552, 703, 806, 850, 1050
NlaIV GGNNCC 1 cut(s) 838
NmuCI GTSAC 1 cut(s) 900
NruI TCGCGA 1 cut(s) 452
NsiI ATGCAT 2 cut(s) 157, 496
NspI RCATGY 2 cut(s) 466, 552
PagI TCATGA 2 cut(s) 235, 699
PdmI GAANNNNTTC 2 cut(s) 222, 243
PfeI GAWTC 2 cut(s) 439, 937
PkrI GCNGC 2 cut(s) 710, 730
PleI GAGTC 2 cut(s) 182, 536
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
PpsI GAGTC 2 cut(s) 182, 536
Ppu21I YACGTR 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 596
PspCI CACGTG 1 cut(s) 469
PspFI CCCAGC 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 838
PspPI GGNCC 1 cut(s) 781
PsuI RGATCY 1 cut(s) 836
RruI TCGCGA 1 cut(s) 452
RsaI GTAC 3 cut(s) 555, 568, 833
RsaNI GTAC 3 cut(s) 554, 567, 832
RseI CAYNNNNRTG 3 cut(s) 467, 698, 845
SacI GAGCTC 1 cut(s) 596
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 709, 729
Sau3AI GATC 3 cut(s) 47, 679, 836
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 2 cut(s) 182, 536
SduI GDGCHC 2 cut(s) 65, 596
SfaNI GCATC 3 cut(s) 508, 702, 1047
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 3 cut(s) 467, 698, 845
SmlI CTYRAG 4 cut(s) 40, 290, 580, 906
SmoI CTYRAG 4 cut(s) 40, 290, 580, 906
Sse9I AATT 8 cut(s) 74, 502, 813, 856, 963, 1039, 1086, 1143
SsiI CCGC 3 cut(s) 521, 711, 728
SspI AATATT 2 cut(s) 738, 1118
SspMI CTAG 2 cut(s) 338, 861
SstI GAGCTC 1 cut(s) 596
TaaI ACNGT 2 cut(s) 646, 959
TaiI ACGT 1 cut(s) 471
TaqI TCGA 2 cut(s) 437, 733
TasI AATT 8 cut(s) 74, 502, 813, 856, 963, 1039, 1086, 1143
TatI WGTACW 2 cut(s) 553, 566
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 2 cut(s) 439, 937
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 2 cut(s) 367, 695
TseFI GTSAC 1 cut(s) 900
TseI GCWGC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 900
TspDTI ATGAA 6 cut(s) 17, 27, 156, 198, 231, 252
TspGWI ACGGA 2 cut(s) 803, 849
TspRI CASTG 2 cut(s) 367, 695
Vha464I CTTAAG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 781
XapI RAATTY 3 cut(s) 813, 963, 1039
XbaI TCTAGA 1 cut(s) 860
XceI RCATGY 2 cut(s) 466, 552
XmnI GAANNNNTTC 2 cut(s) 222, 243
XspI CTAG 2 cut(s) 338, 861
Zsp2I ATGCAT 2 cut(s) 157, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.