FvH4_4g06360

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000237
Physical Location & Seq
Forward (+)
5661196 .. 5661825
630 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06360.t1

Sequence Viewer

Length: 630 bp
ATGTTATATTCATCAGAGACTCAAAAATGGAAGATTCAAGGGTCTGCTAGAAGTTCATGGCCAGCTGACCTCGACTACAAACATGGTGTTTACTGCAACGGCGGAATCCATTGGATACGTGACAGAGATGATCAATTGTCACGCTATGACATAGATAAAGACTTCCCTAGATTGGTGTCTAATCCTTCTGGTCACGGTTTGATGCATGAAAGGAAGTTCAGATATTTTGGGGAGTCTCGTGGCCATTTGCAGCTTATTGATATTTATAAATCATGTGTTACTGAATTTGATGTCATGGAGATGGGAAAGGACGACTCTGGCTGGTTTGTCAAGTACCATGTTGATCTTAATCCCATAGGCACTGTGTTTCCTGAGGTGGTATGCGACCATCTTCACCTTGCTATCTATGACTGTTATTCATGCTGTGTTCTGTTTCTAGCTCGAGAAGAAACTGAAGAGAACTCATCTATTTTGCTGCACATTCCGATGGGAATCATCTCATATAATGTAAGTGACAAGACAGTTAAGAAGCTTAATGACTTAATCCCCAAAGGTAGTGAGACTATGGGATCATTGCAACCGGGATGGGGAGATGCTTGTCCTCATATAGCGACTTTGGCTCGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

210

Amino Acids

23.88

Weight (kDa)

5.77

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 2 cut(s) 59, 241
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 172, 587
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 4 cut(s) 65, 253, 440, 532
AluI AGCT 4 cut(s) 65, 253, 440, 532
Alw26I GTCTC 3 cut(s) 11, 240, 554
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 2 cut(s) 59, 241
ApeKI GCWGC 2 cut(s) 250, 475
ApoI RAATTY 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 1 cut(s) 441
AxyI CCTNAGG 1 cut(s) 372
BalI TGGCCA 2 cut(s) 61, 243
BauI CACGAG 2 cut(s) 237, 621
BbvI GCAGC 2 cut(s) 262, 462
BccI CCATC 4 cut(s) 295, 396, 481, 579
BceAI ACGGC 1 cut(s) 115
BciVI GTATCC 1 cut(s) 108
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 3 cut(s) 11, 240, 554
BfaI CTAG 3 cut(s) 48, 168, 437
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 2 cut(s) 251, 476
BlsI GCNGC 2 cut(s) 252, 477
Bme1390I CCNGG 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 192, 583
BpuMI CCSGG 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 119
BsaBI GATNNNNATC 2 cut(s) 348, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 587
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 572
Bse8I GATNNNNATC 2 cut(s) 348, 491
BseGI GGATG 1 cut(s) 590
BseJI GATNNNNATC 2 cut(s) 348, 491
BseLI CCNNNNNNNGG 2 cut(s) 172, 587
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 262, 462
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 2 cut(s) 61, 243
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 172, 587
BsmAI GTCTC 3 cut(s) 11, 240, 554
BsnI GGCC 2 cut(s) 61, 243
BsoBI CYCGRG 1 cut(s) 441
Bsp143I GATC 3 cut(s) 130, 343, 569
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 61, 243
BspCNI CTCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 572
BssMI GATC 3 cut(s) 130, 343, 569
BssSI CACGAG 2 cut(s) 237, 621
Bst2BI CACGAG 2 cut(s) 237, 621
Bst4CI ACNGT 4 cut(s) 197, 364, 413, 523
Bst6I CTCTTC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 590
BstKTI GATC 3 cut(s) 133, 346, 572
BstMAI GTCTC 3 cut(s) 11, 240, 554
BstMBI GATC 3 cut(s) 130, 343, 569
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 580
BstV1I GCAGC 2 cut(s) 262, 462
Bsu36I CCTNAGG 1 cut(s) 372
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 61, 243
BtsCI GGATG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 334
CviAII CATG 7 cut(s) 57, 83, 206, 273, 295, 338, 420
CviJI RGCY 8 cut(s) 61, 65, 243, 253, 321, 440, 532, 620
CviKI_1 RGCY 8 cut(s) 61, 65, 243, 253, 321, 440, 532, 620
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 372
DpnI GATC 3 cut(s) 132, 345, 571
DpnII GATC 3 cut(s) 130, 343, 569
EaeI YGGCCR 2 cut(s) 59, 241
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 474
Eco81I CCTNAGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 7 cut(s) 60, 86, 209, 276, 298, 341, 423
FatI CATG 7 cut(s) 56, 82, 205, 272, 294, 337, 419
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 251, 476
FokI GGATG 1 cut(s) 597
Fsp4HI GCNGC 2 cut(s) 251, 476
FspBI CTAG 3 cut(s) 48, 168, 437
GluI GCNGC 2 cut(s) 251, 476
HaeIII GGCC 2 cut(s) 61, 243
HapII CCGG 1 cut(s) 581
Hin1II CATG 7 cut(s) 60, 86, 209, 276, 298, 341, 423
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 6 cut(s) 19, 34, 105, 233, 314, 492
HpaII CCGG 1 cut(s) 581
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 16, 221, 486
Hpy188III TCNNGA 2 cut(s) 371, 443
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 4 cut(s) 197, 364, 413, 523
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 96, 205, 250, 478, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 7 cut(s) 60, 86, 209, 276, 298, 341, 423
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 343, 569
LpnPI CCDG 6 cut(s) 75, 174, 303, 307, 384, 594
Lsp1109I GCAGC 2 cut(s) 262, 462
LweI GCATC 2 cut(s) 192, 583
MaeI CTAG 3 cut(s) 48, 168, 437
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 5 cut(s) 119, 138, 191, 277, 512
MalI GATC 3 cut(s) 132, 345, 571
MboI GATC 3 cut(s) 130, 343, 569
MboII GAAGA 4 cut(s) 43, 383, 458, 467
MfeI CAATTG 1 cut(s) 134
MlsI TGGCCA 2 cut(s) 61, 243
MluCI AATT 2 cut(s) 134, 284
MluNI TGGCCA 2 cut(s) 61, 243
MlyI GAGTC 3 cut(s) 13, 242, 308
MnlI CCTC 3 cut(s) 80, 367, 612
Mox20I TGGCCA 2 cut(s) 61, 243
Mph1103I ATGCAT 1 cut(s) 207
MscI TGGCCA 2 cut(s) 61, 243
MseI TTAA 5 cut(s) 348, 525, 534, 542, 628
MslI CAYNNNNRTG 2 cut(s) 299, 485
Msp20I TGGCCA 2 cut(s) 61, 243
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 617
NciI CCSGG 1 cut(s) 582
NdeII GATC 3 cut(s) 130, 343, 569
NlaIII CATG 7 cut(s) 60, 86, 209, 276, 298, 341, 423
NmuCI GTSAC 4 cut(s) 119, 138, 191, 512
NsiI ATGCAT 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 441
PfeI GAWTC 3 cut(s) 34, 105, 492
PkrI GCNGC 2 cut(s) 252, 477
PleI GAGTC 3 cut(s) 13, 241, 308
PpsI GAGTC 3 cut(s) 13, 241, 308
Ppu21I YACGTR 1 cut(s) 119
PsiI TTATAA 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 299, 485
SaqAI TTAA 5 cut(s) 348, 525, 534, 542, 628
SatI GCNGC 2 cut(s) 251, 476
Sau3AI GATC 3 cut(s) 130, 343, 569
SchI GAGTC 3 cut(s) 13, 242, 308
ScrFI CCNGG 1 cut(s) 582
SetI ASST 9 cut(s) 67, 72, 121, 255, 378, 399, 442, 534, 556
SfaNI GCATC 2 cut(s) 192, 583
Sfr274I CTCGAG 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 299, 485
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 2 cut(s) 134, 284
SsiI CCGC 1 cut(s) 102
SspMI CTAG 3 cut(s) 48, 168, 437
StyD4I CCNGG 1 cut(s) 580
TaaI ACNGT 4 cut(s) 197, 364, 413, 523
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 72, 442
TasI AATT 2 cut(s) 134, 284
TfiI GAWTC 3 cut(s) 34, 105, 492
Tru1I TTAA 5 cut(s) 348, 525, 534, 542, 628
Tru9I TTAA 5 cut(s) 348, 525, 534, 542, 628
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 4 cut(s) 119, 138, 191, 512
TseI GCWGC 2 cut(s) 250, 475
Tsp45I GTSAC 4 cut(s) 119, 138, 191, 512
TspDTI ATGAA 3 cut(s) 45, 222, 408
TspRI CASTG 1 cut(s) 367
XapI RAATTY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 441
XspI CTAG 3 cut(s) 48, 168, 437
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.