Rorug02G0579000

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000237
Physical Location & Seq
Forward (+)
70241032 .. 70244861
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0579000.1

Sequence Viewer

Length: 2133 bp
ATGTCCTCCAACTTCTCCCTCCCAAGGTGGACGGTATTCCACCGCCGGCAGAACTCACAGAGCGGCGGCGGTCCCAGCGACAGCGACAACTTTGTGGAAGACAACCCAATCTCACTCTCGACCTCGGTGGTCGAGTGCTACGCGTGCACTCAGGTCGGAGTTCCGGTCTTCCACTCGACCAGCTGCGACGGCGCCCACCAGCCCCAATGGGAGGCCTCGGCGGGGTCTTCCCTAGTCCCTATCCAATCCCGGAGCGACCTCAAGAAGGGTCTCCGCCGCAACCGCCTCCCGGTGGGCCCCTTCGGCGAGGTCCTCGACCCGCGCACCAAGCGCGTGCAGAGGTGGAACCGCGCCTTCCTCCTGGCGCGTGGGATGGCCCTCGCCATCGACCCGCTCTTCTTCTACGCCCTCTCCATCGGGCGCGGTGGGACTCCCTGCCTCTACATGGACGGCGGCCTTGCGGCAATCGTCACGGTGCTCCGCACGTGCGTGGACGCCGTCCACCTTTGCCACCTGTGGCTTCAGTTCCGCCTGGCGTACGTTTCTAGGGAGTCGCTGGTGGTCGGCTGCGGGAAGCTCGTGTGGGACGCCCGTGCGATAGCGTCGCACTATGTTCGGTCCCTCAAGGGCTTCTGGTTCGACGCCTTCGTTATTCTTCCGGTTCCTCAGGCTGTGTTCTGGCTTGTTCTTCCAAAATTGATCAGGGAAGAGAAGATTAAAGTGATAATGACAATTCTTCTAGTAATATTTTTATTCCAATTCCTCCCAAAAGTCTACCATAGCATCTGCTTGATGAGAAGAATGGCAAAGGTCACAGGGTACATTTTCGGCACCATTTGGTGGGGTTTTGCCCTCAACCTCATCGCCTACTTCATTGCCTCACATGTTGCTGGGGGATGCTGGTATGTACTTGCTATACAGCGAGTGGCTTCCTGCCTAAAGCAACAGTGTGAATTGGGTGGGAATTGCAATCTCTCTTTGTCATGCTCACAGGAAGTTTGTTACCAATCTCTGATACCGGATTCCATGGAAGCAACTCCATGTGGTAACAATGTGACAAATGTGTTGAGAAAGCCTTCCTGCTTGGATGTTAATGGAACATTCAACTACGGCATCTATCAGTGGGCTCTTCCTGTCATATCTAGCAACTCGCTGGCTATAAAGATCCTTTATCCTATATTTTGGGGCTTAATGACTCTCAGCACCTTTGGCAATGATCTTGAACCAACAAGTCACTGGCTAGAAGTGATTTTCAGTATATGCATTGTGCTCAGTGGATTACTGCTCTTCACTTTGCTTATTGGGAACATTCAGGTATTTCTGCACGCGGTTATGGCAAAGAAGAGGAAAATGCAGCTGAGGTGCAGAGACATGGAATGGTGGATGAGAAGAAGGCAGTTGCCATCTGCTTTGCGACGAAGAGTCAGGCATTATGAACGCCATAGATGGGCGACAATGGGGGGAGAAGATGAGATGGATTTGATCGAAGACTTGCCTGAAGGTCTTCGAAGAGAAATCAAACGCCACTTATGCATAGACCTCATAAAGAAGGTACCTCTGTTCCACAACTTGGATGATCTGATTCTTGACAACATATGTGATCGCGTTAGGCCTCTGGTCTTTTCTAGAGATGAAAAGATAATTAGAGAAGGAGACCCTGTGCCAAAGATGCTATTCATTGTGCGTGGACGCATAAAGCGTAGCCAAGGCCTAAGTAAAGGCATGGTGGGAACCAATGTGCTTGAACCCGGTGGGTTTCTAGGCGATGAGCTGCTCTCCTGGTGCCTACGCCGGCCCTTCATAGACCGCCTTCCCGCCTCATCCGCCACATTTTCTTGCATTGAATCAACAGAAGCGTTCGGCCTCAATGCAAGCGACCTCAGATACATTACAGACCACTTCCGGTACAAATTTGCAAATGAGAGGCTTAAGAGAACTGCAAGATACTACTCTTCCAATTGGCGAACATGGGCTGCTGTAAATATACAATTCGCTTGGCGCCGCTACAGGCTGAGGACTAGAGGTCCTGTGATTCCTGTAGTGACCCCCGAACAAAATGGAGGCGCTGATCGTAAGCTCTTGCAGTATGCTGCATTGTTCATGTCACTTAGGCCGCATGATCATCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

710

Amino Acids

81.01

Weight (kDa)

9.47

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 155 - 438 2.7e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1552
AccB1I GGYRCC 5 cut(s) 191, 830, 1552, 1782, 1998
AccB7I CCANNNNNTGG 2 cut(s) 840, 1570
AccBSI CCGCTC 2 cut(s) 63, 394
AccI GTMKAC 1 cut(s) 774
AccII CGCG 8 cut(s) 143, 322, 333, 351, 367, 423, 1328, 1605
AclWI GGATC 1 cut(s) 1159
AcsI RAATTY 1 cut(s) 1910
AcuI CTGAAG 2 cut(s) 506, 1518
AcvI CACGTG 1 cut(s) 486
AcyI GRCGYC 5 cut(s) 192, 495, 588, 642, 1999
AfaI GTAC 5 cut(s) 539, 821, 909, 1554, 1907
AflII CTTAAG 1 cut(s) 1928
AflIII ACRYGT 2 cut(s) 141, 883
AgsI TTSAA 4 cut(s) 1105, 1223, 1745, 1844
AhdI GACNNNNNGTC 2 cut(s) 1421, 2022
AjnI CCWGG 3 cut(s) 360, 531, 1778
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 5 cut(s) 183, 577, 1357, 1771, 2077
AluI AGCT 5 cut(s) 183, 577, 1357, 1771, 2077
Alw21I GWGCWC 3 cut(s) 149, 480, 1272
Alw26I GTCTC 3 cut(s) 275, 1362, 1647
Alw44I GTGCAC 1 cut(s) 145
AlwI GGATC 1 cut(s) 1159
AoxI GGCC 9 cut(s) 213, 295, 375, 454, 1610, 1708, 1793, 1861, 2111
ApaI GGGCCC 1 cut(s) 299
ApaLI GTGCAC 1 cut(s) 145
ApeKI GCWGC 6 cut(s) 183, 567, 1354, 1771, 1973, 2090
ApoI RAATTY 1 cut(s) 1910
Asp700I GAANNNNTTC 2 cut(s) 1075, 1503
Asp718I GGTACC 1 cut(s) 1552
AspLEI GCGC 8 cut(s) 194, 324, 333, 353, 367, 423, 2001, 2066
AspS9I GGNCC 8 cut(s) 71, 295, 296, 310, 376, 618, 1794, 2024
AsuC2I CCSGG 3 cut(s) 250, 290, 1749
AsuII TTCGAA 1 cut(s) 1507
AvaII GGWCC 4 cut(s) 71, 310, 618, 2024
AxyI CCTNAGG 1 cut(s) 666
BaeGI GKGCMC 2 cut(s) 149, 299
BaeI ACNNNNGTAYC 2 cut(s) 1544, 1577
BanI GGYRCC 5 cut(s) 191, 830, 1552, 1782, 1998
BanII GRGCYC 2 cut(s) 299, 1129
BauI CACGAG 1 cut(s) 578
BbrPI CACGTG 1 cut(s) 486
BbsI GAAGAC 5 cut(s) 105, 160, 219, 1494, 1496
Bbv12I GWGCWC 3 cut(s) 149, 480, 1272
BbvCI CCTCAGC 2 cut(s) 1358, 2012
BbvI GCAGC 6 cut(s) 170, 554, 1366, 1758, 1960, 2077
BccI CCATC 6 cut(s) 367, 392, 422, 1411, 1440, 1468
BceAI ACGGC 4 cut(s) 205, 466, 482, 1126
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 596, 630
BciT130I CCWGG 3 cut(s) 362, 533, 1780
BclI TGATCA 2 cut(s) 699, 2119
BcnI CCSGG 3 cut(s) 250, 290, 1749
BcoDI GTCTC 3 cut(s) 275, 1362, 1647
BfaI CTAG 8 cut(s) 233, 546, 740, 1143, 1241, 1626, 1760, 2019
BfmI CTRYAG 2 cut(s) 2005, 2037
BfoI RGCGCY 3 cut(s) 195, 2002, 2067
BfrI CTTAAG 1 cut(s) 1928
BglI GCCNNNNNGGC 1 cut(s) 303
Bme1390I CCNGG 6 cut(s) 250, 290, 362, 533, 1749, 1780
Bme18I GGWCC 4 cut(s) 71, 310, 618, 2024
BmeRI GACNNNNNGTC 2 cut(s) 1421, 2022
BmgT120I GGNCC 8 cut(s) 71, 295, 296, 310, 376, 618, 1794, 2024
BmrFI CCNGG 6 cut(s) 250, 290, 362, 533, 1749, 1780
BmsI GCATC 4 cut(s) 792, 887, 1122, 1659
BpiI GAAGAC 5 cut(s) 105, 160, 219, 1494, 1496
BplI GAGNNNNNCTC 2 cut(s) 1760, 1792
Bpu10I CCTNAGC 2 cut(s) 1358, 2012
Bpu14I TTCGAA 1 cut(s) 1507
BpuEI CTTGAG 2 cut(s) 245, 608
BpuMI CCSGG 3 cut(s) 250, 290, 1749
BsaAI YACGTR 1 cut(s) 486
BsaHI GRCGYC 5 cut(s) 192, 495, 588, 642, 1999
BsaI GGTCTC 2 cut(s) 275, 1647
BsaJI CCNNGG 5 cut(s) 23, 123, 216, 1026, 1705
BsaWI WCCGGW 4 cut(s) 163, 658, 1018, 1902
BsaXI ACNNNNNCTCC 6 cut(s) 150, 180, 395, 425, 1644, 1674
Bse118I RCCGGY 2 cut(s) 45, 1791
Bse1I ACTGG 1 cut(s) 1241
Bse21I CCTNAGG 1 cut(s) 666
Bse3DI GCAATG 2 cut(s) 873, 1219
BseBI CCWGG 3 cut(s) 362, 533, 1780
BseDI CCNNGG 5 cut(s) 23, 123, 216, 1026, 1705
BseGI GGATG 6 cut(s) 378, 902, 1093, 1389, 1579, 1820
BseMI GCAATG 2 cut(s) 873, 1219
BseMII CTCAG 7 cut(s) 164, 680, 1213, 1285, 1349, 1894, 2003
BseNI ACTGG 1 cut(s) 1241
BseSI GKGCMC 2 cut(s) 149, 299
BseXI GCAGC 6 cut(s) 170, 554, 1366, 1758, 1960, 2077
BseYI CCCAGC 2 cut(s) 74, 890
BsgI GTGCAG 3 cut(s) 356, 1307, 1384
Bsh1236I CGCG 8 cut(s) 143, 322, 333, 351, 367, 423, 1328, 1605
BshFI GGCC 9 cut(s) 215, 297, 377, 456, 1612, 1710, 1795, 1863, 2113
BshNI GGYRCC 5 cut(s) 191, 830, 1552, 1782, 1998
BsiHKAI GWGCWC 3 cut(s) 149, 480, 1272
BsiSI CCGG 9 cut(s) 46, 164, 250, 290, 659, 1019, 1749, 1792, 1903
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 5 cut(s) 57, 221, 442, 599, 604
BsmAI GTCTC 3 cut(s) 275, 1362, 1647
BsmFI GGGAC 5 cut(s) 57, 221, 442, 599, 604
BsnI GGCC 9 cut(s) 215, 297, 377, 456, 1612, 1710, 1795, 1863, 2113
Bso31I GGTCTC 2 cut(s) 275, 1647
Bsp119I TTCGAA 1 cut(s) 1507
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 5 cut(s) 149, 299, 480, 1129, 1272
Bsp143I GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
Bsp19I CCATGG 1 cut(s) 1026
BspANI GGCC 9 cut(s) 215, 297, 377, 456, 1612, 1710, 1795, 1863, 2113
BspCNI CTCAG 7 cut(s) 163, 679, 1212, 1284, 1350, 1893, 2004
BspFNI CGCG 8 cut(s) 143, 322, 333, 351, 367, 423, 1328, 1605
BspPI GGATC 1 cut(s) 1159
BspQI GCTCTTC 3 cut(s) 401, 1134, 1292
BspT104I TTCGAA 1 cut(s) 1507
BspT107I GGYRCC 5 cut(s) 191, 830, 1552, 1782, 1998
BspTI CTTAAG 1 cut(s) 1928
BspTNI GGTCTC 2 cut(s) 275, 1647
BsrBI CCGCTC 2 cut(s) 63, 394
BsrDI GCAATG 2 cut(s) 873, 1219
BsrFI RCCGGY 2 cut(s) 45, 1791
BsrI ACTGG 1 cut(s) 1241
BssAI RCCGGY 2 cut(s) 45, 1791
BssECI CCNNGG 5 cut(s) 23, 123, 216, 1026, 1705
BssMI GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
BssNI GRCGYC 5 cut(s) 192, 495, 588, 642, 1999
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 3 cut(s) 23, 1026, 1705
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 3 cut(s) 362, 533, 1780
Bst4CI ACNGT 3 cut(s) 34, 475, 948
Bst6I CTCTTC 8 cut(s) 401, 702, 1134, 1292, 1337, 1414, 1504, 1957
BstACI GRCGYC 5 cut(s) 192, 495, 588, 642, 1999
BstAFI CTTAAG 1 cut(s) 1928
BstBAI YACGTR 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 1507
BstC8I GCNNGC 7 cut(s) 47, 145, 335, 1155, 1326, 1793, 1873
BstDEI CTNAG 9 cut(s) 150, 666, 1199, 1271, 1358, 1712, 1880, 2012, 2108
BstDSI CCRYGG 1 cut(s) 1026
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 6 cut(s) 378, 902, 1093, 1389, 1579, 1820
BstFNI CGCG 8 cut(s) 143, 322, 333, 351, 367, 423, 1328, 1605
BstH2I RGCGCY 3 cut(s) 195, 2002, 2067
BstHHI GCGC 8 cut(s) 194, 324, 333, 353, 367, 423, 2001, 2066
BstKTI GATC 8 cut(s) 702, 1167, 1219, 1485, 1579, 1603, 2071, 2122
BstMAI GTCTC 3 cut(s) 275, 1362, 1647
BstMBI GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
BstNI CCWGG 3 cut(s) 362, 533, 1780
BstNSI RCATGY 1 cut(s) 887
BstSCI CCNGG 6 cut(s) 248, 288, 360, 531, 1747, 1778
BstSFI CTRYAG 2 cut(s) 2005, 2037
BstSLI GKGCMC 2 cut(s) 149, 299
BstUI CGCG 8 cut(s) 143, 322, 333, 351, 367, 423, 1328, 1605
BstV1I GCAGC 6 cut(s) 170, 554, 1366, 1758, 1960, 2077
BstV2I GAAGAC 5 cut(s) 105, 160, 219, 1494, 1496
BstX2I RGATCY 1 cut(s) 1164
BstYI RGATCY 1 cut(s) 1164
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 9 cut(s) 215, 297, 377, 456, 1612, 1710, 1795, 1863, 2113
BtgI CCRYGG 1 cut(s) 1026
BtgZI GCGATG 2 cut(s) 847, 1779
BtsCI GGATG 6 cut(s) 378, 902, 1093, 1389, 1579, 1820
BtsIMutI CAGTG 4 cut(s) 953, 1127, 1234, 1279
Cac8I GCNNGC 7 cut(s) 47, 145, 335, 1155, 1326, 1793, 1873
CfoI GCGC 8 cut(s) 194, 324, 333, 353, 367, 423, 2001, 2066
Cfr10I RCCGGY 2 cut(s) 45, 1791
Cfr13I GGNCC 8 cut(s) 71, 295, 296, 310, 376, 618, 1794, 2024
CseI GACGC 5 cut(s) 503, 591, 596, 650, 1698
Csp6I GTAC 5 cut(s) 538, 820, 908, 1553, 1906
CviQI GTAC 5 cut(s) 538, 820, 908, 1553, 1906
DdeI CTNAG 9 cut(s) 150, 666, 1199, 1271, 1358, 1712, 1880, 2012, 2108
DinI GGCGCC 2 cut(s) 193, 2000
DpnI GATC 8 cut(s) 701, 1166, 1218, 1484, 1578, 1602, 2070, 2121
DpnII GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
DriI GACNNNNNGTC 2 cut(s) 1421, 2022
Eam1104I CTCTTC 8 cut(s) 401, 702, 1134, 1292, 1337, 1414, 1504, 1957
Eam1105I GACNNNNNGTC 2 cut(s) 1421, 2022
EarI CTCTTC 8 cut(s) 401, 702, 1134, 1292, 1337, 1414, 1504, 1957
EciI GGCGGA 3 cut(s) 263, 518, 1813
Eco130I CCWWGG 3 cut(s) 23, 1026, 1705
Eco147I AGGCCT 3 cut(s) 215, 1612, 1710
Eco24I GRGCYC 2 cut(s) 299, 1129
Eco31I GGTCTC 2 cut(s) 275, 1647
Eco47I GGWCC 4 cut(s) 71, 310, 618, 2024
Eco57I CTGAAG 2 cut(s) 506, 1518
Eco72I CACGTG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 666
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoO109I RGGNCCY 3 cut(s) 296, 310, 2024
EcoRII CCWGG 3 cut(s) 360, 531, 1778
EcoT14I CCWWGG 3 cut(s) 23, 1026, 1705
EcoT22I ATGCAT 2 cut(s) 1265, 1535
EcoT38I GRGCYC 2 cut(s) 299, 1129
EgeI GGCGCC 2 cut(s) 193, 2000
EheI GGCGCC 2 cut(s) 193, 2000
ErhI CCWWGG 3 cut(s) 23, 1026, 1705
FaqI GGGAC 5 cut(s) 57, 221, 442, 599, 604
FauI CCCGC 5 cut(s) 214, 327, 399, 563, 1822
FauNDI CATATG 1 cut(s) 1595
FbaI TGATCA 2 cut(s) 699, 2119
FblI GTMKAC 1 cut(s) 774
FokI GGATG 6 cut(s) 385, 909, 1100, 1396, 1586, 1807
FriOI GRGCYC 2 cut(s) 299, 1129
FspBI CTAG 8 cut(s) 233, 546, 740, 1143, 1241, 1626, 1760, 2019
GlaI GCGC 8 cut(s) 193, 323, 332, 352, 366, 422, 2000, 2065
GsaI CCCAGC 2 cut(s) 78, 894
HaeII RGCGCY 3 cut(s) 195, 2002, 2067
HaeIII GGCC 9 cut(s) 215, 297, 377, 456, 1612, 1710, 1795, 1863, 2113
HapII CCGG 9 cut(s) 46, 164, 250, 290, 659, 1019, 1749, 1792, 1903
HgaI GACGC 5 cut(s) 503, 591, 596, 650, 1698
HhaI GCGC 8 cut(s) 194, 324, 333, 353, 367, 423, 2001, 2066
Hin1I GRCGYC 5 cut(s) 192, 495, 588, 642, 1999
Hin6I GCGC 8 cut(s) 192, 322, 331, 351, 365, 421, 1999, 2064
HinP1I GCGC 8 cut(s) 192, 322, 331, 351, 365, 421, 1999, 2064
HinfI GANTC 8 cut(s) 430, 551, 1022, 1195, 1422, 1582, 1844, 2032
HpaII CCGG 9 cut(s) 46, 164, 250, 290, 659, 1019, 1749, 1792, 1903
Hpy166II GTNNAC 6 cut(s) 30, 147, 493, 502, 775, 1688
Hpy188I TCNGA 4 cut(s) 158, 1014, 1581, 1883
Hpy188III TCNNGA 6 cut(s) 118, 262, 1220, 1586, 1626, 2126
Hpy8I GTNNAC 6 cut(s) 30, 147, 493, 502, 775, 1688
Hpy99I CGWCG 4 cut(s) 191, 607, 644, 1419
HpyCH4III ACNGT 3 cut(s) 34, 475, 948
HpyCH4IV ACGT 2 cut(s) 485, 540
HpyF3I CTNAG 9 cut(s) 150, 666, 1199, 1271, 1358, 1712, 1880, 2012, 2108
HpySE526I ACGT 2 cut(s) 485, 540
Hsp92I GRCGYC 5 cut(s) 192, 495, 588, 642, 1999
HspAI GCGC 8 cut(s) 192, 322, 331, 351, 365, 421, 1999, 2064
KasI GGCGCC 2 cut(s) 191, 1998
KpnI GGTACC 1 cut(s) 1556
KroI GCCGGC 2 cut(s) 45, 1791
KroNI GCCGGC 2 cut(s) 47, 1793
Ksp22I TGATCA 2 cut(s) 699, 2119
Kzo9I GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
LguI GCTCTTC 3 cut(s) 401, 1134, 1292
LmnI GCTCC 2 cut(s) 252, 483
Lsp1109I GCAGC 6 cut(s) 170, 554, 1366, 1758, 1960, 2077
LweI GCATC 4 cut(s) 792, 887, 1122, 1659
MaeI CTAG 8 cut(s) 233, 546, 740, 1143, 1241, 1626, 1760, 2019
MaeII ACGT 2 cut(s) 485, 540
MaeIII GTNAC 8 cut(s) 469, 811, 1001, 1046, 1054, 1232, 2041, 2103
MalI GATC 8 cut(s) 701, 1166, 1218, 1484, 1578, 1602, 2070, 2121
MbiI CCGCTC 2 cut(s) 63, 394
MboI GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
MfeI CAATTG 1 cut(s) 1957
MflI RGATCY 1 cut(s) 1164
MhlI GDGCHC 5 cut(s) 149, 299, 480, 1129, 1272
MluCI AATT 9 cut(s) 695, 732, 758, 953, 964, 1641, 1910, 1957, 1988
MluI ACGCGT 1 cut(s) 141
Mly113I GGCGCC 2 cut(s) 192, 1999
MlyI GAGTC 4 cut(s) 424, 560, 1189, 1431
MmeI TCCRAC 2 cut(s) 33, 136
Mph1103I ATGCAT 2 cut(s) 1265, 1535
MroNI GCCGGC 2 cut(s) 45, 1791
MroXI GAANNNNTTC 2 cut(s) 1075, 1503
MseI TTAA 4 cut(s) 717, 1092, 1190, 1929
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 2 cut(s) 183, 1357
MspCI CTTAAG 1 cut(s) 1928
MspI CCGG 9 cut(s) 46, 164, 250, 290, 659, 1019, 1749, 1792, 1903
MspR9I CCNGG 6 cut(s) 250, 290, 362, 533, 1749, 1780
MunI CAATTG 1 cut(s) 1957
MvaI CCWGG 3 cut(s) 362, 533, 1780
MvnI CGCG 8 cut(s) 143, 322, 333, 351, 367, 423, 1328, 1605
NaeI GCCGGC 2 cut(s) 47, 1793
NarI GGCGCC 2 cut(s) 192, 1999
NciI CCSGG 3 cut(s) 250, 290, 1749
NcoI CCATGG 1 cut(s) 1026
NdeI CATATG 1 cut(s) 1595
NdeII GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
NgoMIV GCCGGC 2 cut(s) 45, 1791
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 6 cut(s) 469, 811, 1054, 1232, 2041, 2103
NsiI ATGCAT 2 cut(s) 1265, 1535
NspI RCATGY 1 cut(s) 887
NspV TTCGAA 1 cut(s) 1507
OliI CACNNNNGTG 1 cut(s) 488
PceI AGGCCT 3 cut(s) 215, 1612, 1710
PciI ACATGT 1 cut(s) 883
PciSI GCTCTTC 3 cut(s) 401, 1134, 1292
PcsI WCGNNNNNNNCGW 2 cut(s) 645, 1696
PdiI GCCGGC 2 cut(s) 47, 1793
PdmI GAANNNNTTC 2 cut(s) 1075, 1503
PfeI GAWTC 4 cut(s) 1022, 1582, 1844, 2032
Pfl23II CGTACG 1 cut(s) 537
PflFI GACNNNGTC 1 cut(s) 497
PflMI CCANNNNNTGG 2 cut(s) 840, 1570
PfoI TCCNGGA 1 cut(s) 248
PleI GAGTC 4 cut(s) 424, 559, 1189, 1430
PluTI GGCGCC 2 cut(s) 195, 2002
PmaCI CACGTG 1 cut(s) 486
PmlI CACGTG 1 cut(s) 486
PpsI GAGTC 4 cut(s) 424, 559, 1189, 1430
Ppu21I YACGTR 1 cut(s) 486
PpuMI RGGWCCY 2 cut(s) 310, 2024
PscI ACATGT 1 cut(s) 883
Psp5II RGGWCCY 2 cut(s) 310, 2024
Psp6I CCWGG 3 cut(s) 360, 531, 1778
PspCI CACGTG 1 cut(s) 486
PspFI CCCAGC 2 cut(s) 74, 890
PspGI CCWGG 3 cut(s) 360, 531, 1778
PspLI CGTACG 1 cut(s) 537
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 8 cut(s) 71, 295, 296, 310, 376, 618, 1794, 2024
PspPPI RGGWCCY 2 cut(s) 310, 2024
PsuI RGATCY 1 cut(s) 1164
PsyI GACNNNGTC 1 cut(s) 497
PvuII CAGCTG 2 cut(s) 183, 1357
RsaI GTAC 5 cut(s) 539, 821, 909, 1554, 1907
RsaNI GTAC 5 cut(s) 538, 820, 908, 1553, 1906
RseI CAYNNNNRTG 1 cut(s) 488
SapI GCTCTTC 3 cut(s) 401, 1134, 1292
SaqAI TTAA 4 cut(s) 717, 1092, 1190, 1929
Sau3AI GATC 8 cut(s) 699, 1164, 1216, 1482, 1576, 1600, 2068, 2119
Sau96I GGNCC 8 cut(s) 71, 295, 296, 310, 376, 618, 1794, 2024
SchI GAGTC 4 cut(s) 424, 560, 1189, 1431
ScrFI CCNGG 6 cut(s) 250, 290, 362, 533, 1749, 1780
SduI GDGCHC 5 cut(s) 149, 299, 480, 1129, 1272
SfaNI GCATC 4 cut(s) 792, 887, 1122, 1659
SfcI CTRYAG 2 cut(s) 2005, 2037
SfoI GGCGCC 2 cut(s) 193, 2000
SfuI TTCGAA 1 cut(s) 1507
SinI GGWCC 4 cut(s) 71, 310, 618, 2024
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 4 cut(s) 260, 623, 1928, 2126
SmoI CTYRAG 4 cut(s) 260, 623, 1928, 2126
Sse9I AATT 9 cut(s) 695, 732, 758, 953, 964, 1641, 1910, 1957, 1988
SseBI AGGCCT 3 cut(s) 215, 1612, 1710
SspDI GGCGCC 2 cut(s) 191, 1998
SspI AATATT 1 cut(s) 747
SspMI CTAG 8 cut(s) 233, 546, 740, 1143, 1241, 1626, 1760, 2019
StuI AGGCCT 3 cut(s) 215, 1612, 1710
StyD4I CCNGG 6 cut(s) 248, 288, 360, 531, 1747, 1778
StyI CCWWGG 3 cut(s) 23, 1026, 1705
TaaI ACNGT 3 cut(s) 34, 475, 948
TaiI ACGT 2 cut(s) 488, 543
TaqI TCGA 8 cut(s) 119, 132, 176, 315, 387, 639, 1485, 1507
TaqII GACCGA 1 cut(s) 606
TasI AATT 9 cut(s) 695, 732, 758, 953, 964, 1641, 1910, 1957, 1988
TatI WGTACW 1 cut(s) 907
TauI GCSGC 7 cut(s) 66, 69, 279, 456, 464, 2004, 2116
TfiI GAWTC 4 cut(s) 1022, 1582, 1844, 2032
Tru1I TTAA 4 cut(s) 717, 1092, 1190, 1929
Tru9I TTAA 4 cut(s) 717, 1092, 1190, 1929
TscAI CASTG 4 cut(s) 953, 1127, 1241, 1279
TseFI GTSAC 6 cut(s) 469, 811, 1054, 1232, 2041, 2103
TseI GCWGC 6 cut(s) 183, 567, 1354, 1771, 1973, 2090
Tsp45I GTSAC 6 cut(s) 469, 811, 1054, 1232, 2041, 2103
TspDTI ATGAA 6 cut(s) 862, 1449, 1647, 1666, 1789, 2089
TspRI CASTG 4 cut(s) 953, 1127, 1241, 1279
Tth111I GACNNNGTC 1 cut(s) 497
Van91I CCANNNNNTGG 2 cut(s) 840, 1570
Vha464I CTTAAG 1 cut(s) 1928
VneI GTGCAC 1 cut(s) 145
VpaK11BI GGWCC 4 cut(s) 71, 310, 618, 2024
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 1910
XbaI TCTAGA 1 cut(s) 1625
XceI RCATGY 1 cut(s) 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 1233
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 2 cut(s) 1075, 1503
XspI CTAG 8 cut(s) 233, 546, 740, 1143, 1241, 1626, 1760, 2019
Zsp2I ATGCAT 2 cut(s) 1265, 1535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.