FvH4_6g53072

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Reverse (-)
38976702 .. 38977992
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53072.t1

Sequence Viewer

Length: 1152 bp
ATGGAGCAGATACTTTGCCTAGAACGCTGCAGCGGCAGCACCTTAGGAGAAACGGTAGCCAACATAGAAGAACTCCTTACCGAAATCCTTGTGCGTGTGCCTGCTCGACCTCTGGTTCGATTCAAATGCGTCTCCAAGCGTTGGCTCTCTCTTATATCCGACCCCAAATTCTGTCATCGCCACACCCTCAGGAACCCCCATCCCTCCATCTCTGCCATTTTCACTAACGTATCCACTGACTTTTATCACATCACTCTTGATCATCTAGAACAATGTGACACTAGTACTAATCCTGGAAACAAAAGGATACCTGCGTCTGCAGCCCGCAATCCTCTTAACTTCGTTCCACACCTATATGGAACCTACATTGTTCAGTCCTGTAATGGCCTCTTCTTGTGCCTTCCCGATCCTCCAATAGGTAGCCCTCCGATAATTAACCATCCATATTATGTTCTCAATCCCACAACCAACCAGTTCTCCGCACTTGTTCCTCCAGCTGCTGCTGCTGCTACTACACATCAGCCCCGTATATTCGGTTACGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTTCCTTTGGAGCGTCAATGAACCAGTAGATGGCTATTGCCGTTTTTTTCACATAGAGATATACTCTTCTGAGACTCAAAGTTGGAGGCTTCACGATTCCTCTTTCATTAGGAAACCTAATGTCGACTATCGTAAAGGGTATACTGCAATGGCGCAGTTCATTGGGCCTTCAGAGACATCAAGGTATCTTTGGGTGTCTCATGGTGGTGGCCATTTGAATCTTATTGATAGAGTTCGACTTAATATTCCATTTGAAGTGTTGGAGATGGGGAGAGACTACTCTGGTTGGTTTGTCAAGTACCATGTTGATCTGAATCCCATATTCACTGCTTACCCCCAGCTCTCACCAATTTGGGATATTATTCTTCTCTTCATTGCTCGAGAGGAAACCGAAGGAGAAGACAGTTCATCTTTGTTGCTGCATATTCCTGGTAAAGTCATCTCTTGTGATCTTAGGAGCAATACCCTCAATTATTTTAAGTTACCTCCTGAGGTCGGGGGTGATGATTTTTCTATCAGAGTTCACCAACAAAATCATCCATATGTGGAGAGTTTGGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

384

Amino Acids

43.43

Weight (kDa)

6.49

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 59 4.9e-07 F-box domain
FBA_1 PF07734 118 - 229 3.8e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccB7I CCANNNNNTGG 2 cut(s) 141, 614
AccI GTMKAC 2 cut(s) 708, 725
AciI CCGC 3 cut(s) 33, 325, 480
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 2 cut(s) 286, 884
AfiI CCNNNNNNNGG 4 cut(s) 141, 416, 614, 1079
AgsI TTSAA 3 cut(s) 124, 802, 839
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 2 cut(s) 292, 1012
AluBI AGCT 2 cut(s) 497, 925
AluI AGCT 2 cut(s) 497, 925
Alw26I GTCTC 5 cut(s) 136, 650, 752, 786, 852
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 963
AoxI GGCC 3 cut(s) 385, 749, 793
ApeKI GCWGC 9 cut(s) 27, 30, 36, 320, 497, 500, 503, 506, 1003
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 4 cut(s) 558, 921, 1097, 1100
AvaI CYCGRG 1 cut(s) 963
AxyI CCTNAGG 3 cut(s) 43, 188, 1074
BaeI ACNNNNGTAYC 4 cut(s) 213, 246, 299, 332
BalI TGGCCA 1 cut(s) 795
BbsI GAAGAC 2 cut(s) 577, 990
BbvI GCAGC 9 cut(s) 14, 42, 48, 332, 484, 487, 490, 493, 990
BccI CCATC 5 cut(s) 207, 215, 447, 608, 844
BceAI ACGGC 1 cut(s) 609
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciT130I CCWGG 2 cut(s) 294, 1014
BciVI GTATCC 2 cut(s) 241, 300
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 5 cut(s) 136, 650, 752, 786, 852
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 3 cut(s) 20, 266, 282
BfmI CTRYAG 2 cut(s) 28, 318
BfuAI ACCTGC 1 cut(s) 319
BfuI GTATCC 2 cut(s) 241, 300
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 294, 1014
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 2 cut(s) 194, 361
BmrFI CCNGG 2 cut(s) 294, 1014
BpiI GAAGAC 2 cut(s) 577, 990
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 897
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 461, 491
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 416, 614, 1079
Bse1I ACTGG 2 cut(s) 472, 608
Bse21I CCTNAGG 3 cut(s) 43, 188, 1074
Bse3DI GCAATG 2 cut(s) 738, 957
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 2 cut(s) 294, 1014
BseGI GGATG 3 cut(s) 199, 439, 1120
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 4 cut(s) 141, 416, 614, 1079
BseMI GCAATG 2 cut(s) 738, 957
BseMII CTCAG 3 cut(s) 202, 645, 1065
BseNI ACTGG 2 cut(s) 472, 608
BseXI GCAGC 9 cut(s) 14, 42, 48, 332, 484, 487, 490, 493, 990
BseYI CCCAGC 1 cut(s) 921
BshFI GGCC 3 cut(s) 387, 751, 795
BsiHKCI CYCGRG 1 cut(s) 963
BslI CCNNNNNNNGG 4 cut(s) 141, 416, 614, 1079
BsmAI GTCTC 5 cut(s) 136, 650, 752, 786, 852
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 3 cut(s) 387, 751, 795
BsoBI CYCGRG 1 cut(s) 963
Bsp143I GATC 4 cut(s) 259, 406, 892, 1033
BspACI CCGC 3 cut(s) 33, 325, 480
BspANI GGCC 3 cut(s) 387, 751, 795
BspCNI CTCAG 3 cut(s) 201, 646, 1066
BspLI GGNNCC 2 cut(s) 194, 361
BspMAI CTGCAG 2 cut(s) 32, 322
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 401
BsrDI GCAATG 2 cut(s) 738, 957
BsrI ACTGG 2 cut(s) 472, 608
BssMI GATC 4 cut(s) 259, 406, 892, 1033
BssNAI GTATAC 1 cut(s) 726
Bst1107I GTATAC 1 cut(s) 726
Bst2UI CCWGG 2 cut(s) 294, 1014
Bst4CI ACNGT 2 cut(s) 55, 989
Bst6I CTCTTC 3 cut(s) 395, 655, 959
BstC8I GCNNGC 2 cut(s) 102, 325
BstDEI CTNAG 5 cut(s) 43, 188, 654, 1037, 1074
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 3 cut(s) 199, 439, 1120
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 4 cut(s) 262, 409, 895, 1036
BstMAI GTCTC 5 cut(s) 136, 650, 752, 786, 852
BstMBI GATC 4 cut(s) 259, 406, 892, 1033
BstMWI GCNNNNNNNGC 6 cut(s) 24, 33, 36, 320, 503, 506
BstNI CCWGG 2 cut(s) 294, 1014
BstSCI CCNGG 2 cut(s) 292, 1012
BstSFI CTRYAG 2 cut(s) 28, 318
BstV1I GCAGC 9 cut(s) 14, 42, 48, 332, 484, 487, 490, 493, 990
BstV2I GAAGAC 2 cut(s) 577, 990
BstZ17I GTATAC 1 cut(s) 726
Bsu36I CCTNAGG 3 cut(s) 43, 188, 1074
BsuI GTATCC 2 cut(s) 241, 300
BsuRI GGCC 3 cut(s) 387, 751, 795
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 3 cut(s) 199, 439, 1120
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 2 cut(s) 234, 909
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 102, 325
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 749
CseI GACGC 3 cut(s) 118, 303, 586
Csp6I GTAC 2 cut(s) 285, 883
CviAII CATG 2 cut(s) 785, 887
CviQI GTAC 2 cut(s) 285, 883
DdeI CTNAG 5 cut(s) 43, 188, 654, 1037, 1074
DpnI GATC 4 cut(s) 261, 408, 894, 1035
DpnII GATC 4 cut(s) 259, 406, 892, 1033
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 3 cut(s) 395, 655, 959
EarI CTCTTC 3 cut(s) 395, 655, 959
Eco57I CTGAAG 1 cut(s) 738
Eco81I CCTNAGG 3 cut(s) 43, 188, 1074
Eco88I CYCGRG 1 cut(s) 963
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 292, 1012
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 2 cut(s) 788, 890
FalI AAGNNNNNCTT 4 cut(s) 60, 92, 569, 601
FatI CATG 2 cut(s) 784, 886
FauI CCCGC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 1126
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 2 cut(s) 708, 725
FokI GGATG 3 cut(s) 186, 426, 1107
FspBI CTAG 3 cut(s) 20, 266, 282
GlaI GCGC 1 cut(s) 738
GsaI CCCAGC 1 cut(s) 925
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 3 cut(s) 387, 751, 795
HgaI GACGC 3 cut(s) 118, 303, 586
HhaI GCGC 1 cut(s) 739
Hin1II CATG 2 cut(s) 788, 890
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 5 cut(s) 120, 658, 680, 802, 898
HphI GGTGA 4 cut(s) 558, 921, 1097, 1100
Hpy166II GTNNAC 3 cut(s) 709, 726, 1108
Hpy188I TCNGA 6 cut(s) 160, 429, 655, 757, 897, 1103
Hpy188III TCNNGA 7 cut(s) 190, 257, 266, 404, 677, 965, 1073
Hpy8I GTNNAC 3 cut(s) 709, 726, 1108
HpyAV CCTTC 4 cut(s) 410, 567, 762, 971
HpyCH4III ACNGT 2 cut(s) 55, 989
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 30, 320, 731, 1006
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 33, 36, 320, 503, 506
HpyF3I CTNAG 5 cut(s) 43, 188, 654, 1037, 1074
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 2 cut(s) 788, 890
HspAI GCGC 1 cut(s) 737
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 4 cut(s) 259, 406, 892, 1033
LmnI GCTCC 3 cut(s) 4, 594, 1041
Lsp1109I GCAGC 9 cut(s) 14, 42, 48, 332, 484, 487, 490, 493, 990
MaeI CTAG 3 cut(s) 20, 266, 282
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 275, 536, 1065
MalI GATC 4 cut(s) 261, 408, 894, 1035
MboI GATC 4 cut(s) 259, 406, 892, 1033
MboII GAAGA 7 cut(s) 80, 382, 577, 642, 941, 946, 995
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 4 cut(s) 167, 432, 933, 1054
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 3 cut(s) 183, 647, 825
Mox20I TGGCCA 1 cut(s) 795
MscI TGGCCA 1 cut(s) 795
MseI TTAA 4 cut(s) 336, 435, 825, 1062
MslI CAYNNNNRTG 3 cut(s) 354, 789, 1125
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 2 cut(s) 33, 497
MspR9I CCNGG 2 cut(s) 294, 1014
MvaI CCWGG 2 cut(s) 294, 1014
MwoI GCNNNNNNNGC 6 cut(s) 24, 33, 36, 320, 503, 506
NdeI CATATG 1 cut(s) 1126
NdeII GATC 4 cut(s) 259, 406, 892, 1033
NlaIII CATG 2 cut(s) 788, 890
NlaIV GGNNCC 2 cut(s) 194, 361
NmuCI GTSAC 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 963
PfeI GAWTC 4 cut(s) 120, 680, 802, 898
PflMI CCANNNNNTGG 2 cut(s) 141, 614
PfoI TCCNGGA 1 cut(s) 292
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 292, 1012
PspFI CCCAGC 1 cut(s) 921
PspGI CCWGG 2 cut(s) 292, 1012
PspN4I GGNNCC 2 cut(s) 194, 361
PspPI GGNCC 1 cut(s) 749
PstI CTGCAG 2 cut(s) 32, 322
PstNI CAGNNNCTG 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 286, 884
RsaNI GTAC 2 cut(s) 285, 883
RseI CAYNNNNRTG 3 cut(s) 354, 789, 1125
SalI GTCGAC 1 cut(s) 707
SaqAI TTAA 4 cut(s) 336, 435, 825, 1062
Sau3AI GATC 4 cut(s) 259, 406, 892, 1033
Sau96I GGNCC 1 cut(s) 749
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 2 cut(s) 294, 1014
SfcI CTRYAG 2 cut(s) 28, 318
Sfr274I CTCGAG 1 cut(s) 963
SlaI CTCGAG 1 cut(s) 963
SmiMI CAYNNNNRTG 3 cut(s) 354, 789, 1125
SmlI CTYRAG 1 cut(s) 963
SmoI CTYRAG 1 cut(s) 963
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 4 cut(s) 167, 432, 933, 1054
SsiI CCGC 3 cut(s) 33, 325, 480
SspI AATATT 1 cut(s) 829
SspMI CTAG 3 cut(s) 20, 266, 282
StyD4I CCNGG 2 cut(s) 292, 1012
TaaI ACNGT 2 cut(s) 55, 989
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 106, 118, 708, 820, 964
TasI AATT 4 cut(s) 167, 432, 933, 1054
TatI WGTACW 1 cut(s) 284
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 120, 680, 802, 898
Tru1I TTAA 4 cut(s) 336, 435, 825, 1062
Tru9I TTAA 4 cut(s) 336, 435, 825, 1062
TscAI CASTG 2 cut(s) 241, 916
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 9 cut(s) 27, 30, 36, 320, 497, 500, 503, 506, 1003
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 5 cut(s) 618, 679, 733, 946, 981
TspRI CASTG 2 cut(s) 241, 916
Van91I CCANNNNNTGG 2 cut(s) 141, 614
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 167
XbaI TCTAGA 1 cut(s) 265
XhoI CTCGAG 1 cut(s) 963
XmiI GTMKAC 2 cut(s) 708, 725
XspI CTAG 3 cut(s) 20, 266, 282
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.