Rroxscaffold_2G00078170

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000237
Physical Location & Seq
Reverse (-)
1570951 .. 1572475
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078170.1

Sequence Viewer

Length: 1104 bp
ATGGAGCACAGATTCTACCCAAAACGCTGCACCAGTAGCTTAGCGGAAACCGTAGCCAGCATAGAACAAGTCCTTACTGAAATCCTTGTGCGCGTGCCAGCTAAACCTCTAGTCCGCTTCAAATGCATCCTGCCGCCCCTTTGTTTCGTCCCTATTGATTTGGATCACATGCGTGGAACGAACCAATATGATTATGGCATCAAAACTGTCCACACCTTTCCTGTCAATCGTCTTCATTTTGATCACAAAAGCCCATCTCGCCCTGGTTCACCCCCTTTCAATCCTCTTACGTTTGCTCAAAACCAATATCATGATGACATCATAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCTTCTTTTTCATAATAAACTGAACCCCCCATATCTTATTTTCAATCCTACAACAAACCAGTTCTCTACACTTATTCCTCCTCCAACTACTGCTGTTATCTCCGCTACTGGTGAACGAAAAGAACACTATGTCTCTACTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACCATTGATGGATCTGAAGACGGCACTATCTATCACATAGTGATATATTCATCTGAGACTCAAAGTTGGAGGATTCTCGATTCTTCTATTGAGAGGGTATTTTCCATCCTCTATGAACGCGTGGTATACTGGAATGGAGCAATTCATTGGTTAGGCATGTTTAGTGAGGTAGCATACTTTCACATAGATGAAGAACGTGACGGTTTTATTGATAACCCTCCTCACTTTTATGAGAAGGACGTTCACAGGAGGAAATGTAGATACTTTCAGGAGTCTCATGACGGGCACCATTTGTATCTTATTGATATATATCGGCCTTGTATTACTAAATTTGAAGTGTTTGAGATGGGGAAAGACTACTCTGATCAAGATGAAAATGAAGAAGAGGAAAGTTCATCTCTGTTGCTGCATATGCCTGGCAAACTCATTTCTTATAATCTTAAGAGCAAGACCTACAAATCTCTTGATTTAACTCCAAAGCCCGGAGTTAAGGATTCTCTCTTACGAGTTGAAGCAGATAATTATCGATATATGGAGACTCTGGCCTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

367

Amino Acids

42.6

Weight (kDa)

6.13

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 100 - 235 1.6e-12 F-box associated beta propeller domain
FBA_3 PF08268 105 - 257 1.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 834
AccI GTMKAC 1 cut(s) 675
AccII CGCG 2 cut(s) 93, 669
AciI CCGC 4 cut(s) 44, 115, 134, 459
AclWI GGATC 2 cut(s) 171, 568
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 589
AfiI CCNNNNNNNGG 1 cut(s) 1031
AflII CTTAAG 1 cut(s) 989
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 5 cut(s) 121, 280, 400, 884, 1061
AjnI CCWGG 2 cut(s) 262, 964
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 2 cut(s) 39, 101
AluI AGCT 2 cut(s) 39, 101
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 4 cut(s) 493, 599, 828, 1079
AlwI GGATC 2 cut(s) 171, 568
AoxI GGCC 3 cut(s) 343, 863, 1092
ApeKI GCWGC 2 cut(s) 27, 955
ApoI RAATTY 1 cut(s) 878
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 549
AsuC2I CCSGG 1 cut(s) 1032
AsuHPI GGTGA 3 cut(s) 261, 479, 513
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 837
BanI GGYRCC 1 cut(s) 834
BbsI GAAGAC 4 cut(s) 224, 350, 536, 573
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 14, 942
BccI CCATC 4 cut(s) 262, 551, 662, 889
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 2 cut(s) 264, 966
BclI TGATCA 2 cut(s) 241, 913
BcnI CCSGG 1 cut(s) 1032
BcoDI GTCTC 4 cut(s) 493, 599, 828, 1079
BfaI CTAG 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 989
BisI GCNGC 3 cut(s) 28, 134, 956
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 3 cut(s) 29, 135, 957
Bme1390I CCNGG 3 cut(s) 264, 966, 1032
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 549
BmiI GGNNCC 1 cut(s) 836
BmrFI CCNGG 3 cut(s) 264, 966, 1032
BmsI GCATC 2 cut(s) 135, 207
BpiI GAAGAC 4 cut(s) 224, 350, 536, 573
Bpu1102I GCTNAGC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 1032
Bsa29I ATCGAT 1 cut(s) 1075
BsaBI GATNNNNATC 3 cut(s) 162, 858, 1071
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 1031
Bse1I ACTGG 5 cut(s) 33, 331, 415, 469, 683
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 3 cut(s) 162, 858, 1071
BseBI CCWGG 2 cut(s) 264, 966
BseCI ATCGAT 1 cut(s) 1075
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 126, 654
BseJI GATNNNNATC 3 cut(s) 162, 858, 1071
BseLI CCNNNNNNNGG 1 cut(s) 1031
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 5 cut(s) 33, 331, 415, 469, 683
BseRI GAGGAG 2 cut(s) 426, 759
BseSI GKGCMC 1 cut(s) 837
BseXI GCAGC 2 cut(s) 14, 942
BsgI GTGCAG 1 cut(s) 13
Bsh1236I CGCG 2 cut(s) 93, 669
BshFI GGCC 3 cut(s) 345, 865, 1094
BshNI GGYRCC 1 cut(s) 834
BshVI ATCGAT 1 cut(s) 1075
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 1032
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 1031
BsmAI GTCTC 4 cut(s) 493, 599, 828, 1079
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 3 cut(s) 345, 865, 1094
Bsp1286I GDGCHC 2 cut(s) 9, 837
Bsp143I GATC 4 cut(s) 163, 241, 560, 913
Bsp1720I GCTNAGC 1 cut(s) 40
BspACI CCGC 4 cut(s) 44, 115, 134, 459
BspANI GGCC 3 cut(s) 345, 865, 1094
BspCNI CTCAG 1 cut(s) 595
BspDI ATCGAT 1 cut(s) 1075
BspFNI CGCG 2 cut(s) 93, 669
BspHI TCATGA 2 cut(s) 310, 826
BspLI GGNNCC 1 cut(s) 836
BspPI GGATC 2 cut(s) 171, 568
BspT107I GGYRCC 1 cut(s) 834
BspTI CTTAAG 1 cut(s) 989
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 5 cut(s) 33, 331, 415, 469, 683
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 4 cut(s) 163, 241, 560, 913
BssNAI GTATAC 1 cut(s) 676
Bst1107I GTATAC 1 cut(s) 676
Bst2UI CCWGG 2 cut(s) 264, 966
Bst4CI ACNGT 3 cut(s) 52, 208, 752
Bst6I CTCTTC 2 cut(s) 353, 927
BstAFI CTTAAG 1 cut(s) 989
BstC8I GCNNGC 3 cut(s) 58, 95, 99
BstDEI CTNAG 2 cut(s) 40, 603
BstF5I GGATG 2 cut(s) 126, 654
BstFNI CGCG 2 cut(s) 93, 669
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 4 cut(s) 166, 244, 563, 916
BstMAI GTCTC 4 cut(s) 493, 599, 828, 1079
BstMBI GATC 4 cut(s) 163, 241, 560, 913
BstMWI GCNNNNNNNGC 4 cut(s) 36, 123, 258, 961
BstNI CCWGG 2 cut(s) 264, 966
BstNSI RCATGY 2 cut(s) 172, 709
BstSCI CCNGG 3 cut(s) 262, 964, 1030
BstSLI GKGCMC 1 cut(s) 837
BstUI CGCG 2 cut(s) 93, 669
BstV1I GCAGC 2 cut(s) 14, 942
BstV2I GAAGAC 4 cut(s) 224, 350, 536, 573
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BstZ17I GTATAC 1 cut(s) 676
Bsu15I ATCGAT 1 cut(s) 1075
BsuRI GGCC 3 cut(s) 345, 865, 1094
BsuTUI ATCGAT 1 cut(s) 1075
BtsCI GGATG 2 cut(s) 126, 654
Cac8I GCNNGC 3 cut(s) 58, 95, 99
CciI TCATGA 2 cut(s) 310, 826
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 549
ClaI ATCGAT 1 cut(s) 1075
CviAII CATG 4 cut(s) 169, 311, 706, 827
CviJI RGCY 9 cut(s) 39, 56, 101, 252, 345, 503, 865, 1030, 1094
CviKI_1 RGCY 9 cut(s) 39, 56, 101, 252, 345, 503, 865, 1030, 1094
DdeI CTNAG 2 cut(s) 40, 603
DpnI GATC 4 cut(s) 165, 243, 562, 915
DpnII GATC 4 cut(s) 163, 241, 560, 913
DraIII CACNNNGTG 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 353, 927
EarI CTCTTC 2 cut(s) 353, 927
Eco47I GGWCC 1 cut(s) 549
Eco57I CTGAAG 1 cut(s) 585
EcoRII CCWGG 2 cut(s) 262, 964
EcoT22I ATGCAT 1 cut(s) 128
FaeI CATG 4 cut(s) 172, 314, 709, 830
FaqI GGGAC 1 cut(s) 134
FatI CATG 4 cut(s) 168, 310, 705, 826
FauNDI CATATG 1 cut(s) 960
FbaI TGATCA 2 cut(s) 241, 913
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 28, 134, 956
FokI GGATG 2 cut(s) 113, 641
Fsp4HI GCNGC 3 cut(s) 28, 134, 956
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 28, 134, 956
HaeIII GGCC 3 cut(s) 345, 865, 1094
HapII CCGG 1 cut(s) 1032
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 172, 314, 709, 830
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 7 cut(s) 12, 607, 622, 629, 821, 1043, 1087
HpaII CCGG 1 cut(s) 1032
HphI GGTGA 3 cut(s) 261, 479, 513
Hpy166II GTNNAC 5 cut(s) 211, 269, 470, 676, 793
Hpy188I TCNGA 4 cut(s) 549, 565, 604, 913
Hpy188III TCNNGA 6 cut(s) 311, 626, 818, 827, 917, 1013
Hpy8I GTNNAC 5 cut(s) 211, 269, 470, 676, 793
HpyAV CCTTC 2 cut(s) 522, 778
HpyCH4III ACNGT 3 cut(s) 52, 208, 752
HpyCH4IV ACGT 3 cut(s) 290, 745, 789
HpyCH4V TGCA 4 cut(s) 30, 126, 339, 958
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 123, 258, 961
HpyF3I CTNAG 2 cut(s) 40, 603
HpySE526I ACGT 3 cut(s) 290, 745, 789
Hsp92II CATG 4 cut(s) 172, 314, 709, 830
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 2 cut(s) 241, 913
Kzo9I GATC 4 cut(s) 163, 241, 560, 913
LmnI GCTCC 2 cut(s) 4, 686
Lsp1109I GCAGC 2 cut(s) 14, 942
LweI GCATC 2 cut(s) 135, 207
MaeI CTAG 1 cut(s) 110
MaeII ACGT 3 cut(s) 290, 745, 789
MaeIII GTNAC 1 cut(s) 746
MalI GATC 4 cut(s) 165, 243, 562, 915
MboI GATC 4 cut(s) 163, 241, 560, 913
MboII GAAGA 9 cut(s) 224, 340, 350, 536, 578, 624, 752, 941, 944
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 2 cut(s) 9, 837
MluCI AATT 4 cut(s) 324, 690, 878, 1069
MluI ACGCGT 1 cut(s) 667
MlyI GAGTC 3 cut(s) 601, 830, 1081
MmeI TCCRAC 2 cut(s) 464, 596
Mph1103I ATGCAT 1 cut(s) 128
MseI TTAA 3 cut(s) 990, 1019, 1038
MslI CAYNNNNRTG 3 cut(s) 171, 735, 777
MspCI CTTAAG 1 cut(s) 989
MspI CCGG 1 cut(s) 1032
MspR9I CCNGG 3 cut(s) 264, 966, 1032
MvaI CCWGG 2 cut(s) 264, 966
MvnI CGCG 2 cut(s) 93, 669
MwoI GCNNNNNNNGC 4 cut(s) 36, 123, 258, 961
NciI CCSGG 1 cut(s) 1032
NdeI CATATG 1 cut(s) 960
NdeII GATC 4 cut(s) 163, 241, 560, 913
NlaIII CATG 4 cut(s) 172, 314, 709, 830
NlaIV GGNNCC 1 cut(s) 836
NmuCI GTSAC 1 cut(s) 746
NsiI ATGCAT 1 cut(s) 128
NspI RCATGY 2 cut(s) 172, 709
OliI CACNNNNGTG 1 cut(s) 171
PagI TCATGA 2 cut(s) 310, 826
PfeI GAWTC 4 cut(s) 12, 622, 629, 1043
PkrI GCNGC 3 cut(s) 29, 135, 957
PleI GAGTC 3 cut(s) 601, 829, 1081
PpsI GAGTC 3 cut(s) 601, 829, 1081
PsiI TTATAA 1 cut(s) 984
Psp6I CCWGG 2 cut(s) 262, 964
PspGI CCWGG 2 cut(s) 262, 964
PspN4I GGNNCC 1 cut(s) 836
PspPI GGNCC 1 cut(s) 549
PsuI RGATCY 1 cut(s) 560
RseI CAYNNNNRTG 3 cut(s) 171, 735, 777
SaqAI TTAA 3 cut(s) 990, 1019, 1038
SatI GCNGC 3 cut(s) 28, 134, 956
Sau3AI GATC 4 cut(s) 163, 241, 560, 913
Sau96I GGNCC 1 cut(s) 549
SchI GAGTC 3 cut(s) 601, 830, 1081
ScrFI CCNGG 3 cut(s) 264, 966, 1032
SduI GDGCHC 2 cut(s) 9, 837
SfaNI GCATC 2 cut(s) 135, 207
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 3 cut(s) 171, 735, 777
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
Sse9I AATT 4 cut(s) 324, 690, 878, 1069
SsiI CCGC 4 cut(s) 44, 115, 134, 459
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 262, 964, 1030
TaaI ACNGT 3 cut(s) 52, 208, 752
TaiI ACGT 3 cut(s) 293, 748, 792
TaqI TCGA 2 cut(s) 627, 1075
TasI AATT 4 cut(s) 324, 690, 878, 1069
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 4 cut(s) 12, 622, 629, 1043
Tru1I TTAA 3 cut(s) 990, 1019, 1038
Tru9I TTAA 3 cut(s) 990, 1019, 1038
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 2 cut(s) 27, 955
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 9 cut(s) 224, 356, 588, 678, 683, 753, 933, 936, 942
Vha464I CTTAAG 1 cut(s) 989
VpaK11BI GGWCC 1 cut(s) 549
XapI RAATTY 1 cut(s) 878
XceI RCATGY 2 cut(s) 172, 709
XcmI CCANNNNNNNNNTGG 2 cut(s) 191, 338
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.