FvH4_6g53651

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000237
Physical Location & Seq
Forward (+)
39287235 .. 39288706
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53651.t1

Sequence Viewer

Length: 282 bp
ATGGGAAGAGACTACTCTTGGTGGTTTGTCAAGTACAATGTGGATCTTGATCCTTTATTCACTGCTTACCCTACGCATATATTTGTTGTTCTCTTTCTTGCTAAAGGGGAAAATGAAGAGGAAGGTTCATCTCTGTTGCTGCATGCGCGTGGAAAAGTATTCTCTTACAATCTTAAGAGTCACACCTTCAAATCGATTGACTTAACACCCCAGGCCGGTGTTGATGATACTTCTATTCTCCGGGATTGGAGTGGTGGCATTTTTGCCAGCCTAGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

94

Amino Acids

10.56

Weight (kDa)

5.21

Isoelectric Point (pI)

20.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 148
AclWI GGATC 2 cut(s) 44, 51
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 215
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 2 cut(s) 44, 51
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 242
BbvI GCAGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 1 cut(s) 272
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 2 cut(s) 212, 242
BmrFI CCNGG 2 cut(s) 212, 242
BpuMI CCSGG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 215
BshVI ATCGAT 1 cut(s) 194
BsiSI CCGG 2 cut(s) 216, 241
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 43, 49
BspANI GGCC 1 cut(s) 215
BspDI ATCGAT 1 cut(s) 194
BspFNI CGCG 1 cut(s) 148
BspPI GGATC 2 cut(s) 44, 51
BspTI CTTAAG 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 43, 49
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 144, 268
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 46, 52
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 43, 49
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 210, 240
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 194
BsuRI GGCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 144, 268
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 215
ClaI ATCGAT 1 cut(s) 194
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 215, 270
CviKI_1 RGCY 2 cut(s) 215, 270
CviQI GTAC 1 cut(s) 34
DpnI GATC 2 cut(s) 45, 51
DpnII GATC 2 cut(s) 43, 49
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 78, 80, 144
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 215
HapII CCGG 2 cut(s) 216, 241
HhaI GCGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 216, 241
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 116, 196
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 2 cut(s) 43, 49
LpnPI CCDG 4 cut(s) 197, 224, 229, 254
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 45, 51
MboI GATC 2 cut(s) 43, 49
MboII GAAGA 2 cut(s) 18, 128
MflI RGATCY 1 cut(s) 43
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 1 cut(s) 112
MseI TTAA 2 cut(s) 174, 203
MslI CAYNNNNRTG 1 cut(s) 147
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 216, 241
MspR9I CCNGG 2 cut(s) 212, 242
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 145
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 43, 49
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 174, 203
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 43, 49
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 212, 242
SetI ASST 2 cut(s) 127, 188
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SphI GCATGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 210, 240
TaqI TCGA 1 cut(s) 194
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 2 cut(s) 174, 203
Tru9I TTAA 2 cut(s) 174, 203
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 117, 129
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 173
XceI RCATGY 1 cut(s) 146
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.