Rh2AG658600

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000237
Physical Location & Seq
Forward (+)
87477619 .. 87483786
6168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG658600.1

Sequence Viewer

Length: 1350 bp
ATGGCGCAGAGATTCTACCCGAAACGCTGCACCAGTAGCACAGCAGAAACCGTAGCCAACACCGAAGAACTCCTTACCCAAATCCTTGTGCGTGTGCCTGCTAGACCTCTGGTCCGATTCAAATGTGTCTCCAAGCACTGGCTCTCTCTTATATCCGACCCCAGATTCTGTCACCGCCACACCCTTCAAAACCCAAACACTCCCATCTCCGCCGTCTTCTGTGACACATCCCAACAGCCCTTTCGTTTCATCCCTCTTGATGATCTTGATCGCATGCGTGGAGCTTGTAGGACTAACCATGAAAACCAAAACCCATCTGGCTCTGCTTCACCTACTTGTAATCCTCTCGATTATGATTACGATACCAAAACTGGCCAGACCTTTCCCGTTGACCCTCTTCCTCTTTGTTGTAACAAAAGCCCATCTCGGTCTGGTTCAGCCTCATTCAATCCTCTTAACTTTGCTCAAAACCAATATGATGATGACATCAGAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCGTCTTTTTCATTCTGAAAATGTAAACCCCCTATATTTTATTCTCAATCCTACAACCAATCAGTTCCACACACTTATTCCTCCTCCAGCTACTCTTGTTACCACTGCTACCGGTGAACAAGTAGAACCCTATATCATCTCTATTGCTTTGGCATTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACCATTGATGGATCCAAAGACGGCACTATCTTTCACGTAGTGATATATTCATCTGAGACTCAAAGTTGGTGGCTTCTTGATTCTTTTATTGAGAGGACCTTTCCTGTCAACCGTCTTCATTTTGATCACGAAAGCCCATCTCGCTCTGGTTCAGCCCTTTTCAATCCTCTTAAGTTCGCTCAAAACCAATATCATGATGACATCATAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCTTCTTTTTCATTCTGAAAATGTGAACCCCCCATATTTTATTTTCAATCCTACAACCAACCAGTTCTCTACACTTATTCCTCCTCCAGCTACTGCTGTTACCACCGCTACTGGTGAAGGAGTAGAACCCTATGTCATCTCTATTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACAATTGATGGATCCGAAGACGGCACTATCTATCACATAGTGATATATTCATCTGAGACTCAAAGTTGGAGGATTCTCGTTTCTTCTTTCGAGAGGGTTGGTGTGTATCTATTCTCAGAGAGAATTGCAATCTACTTTATGGAACCAAATTGTACCTCAATTATATTTGACTTCACCACTGGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

449

Amino Acids

50.63

Weight (kDa)

5.95

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 58 2e-06 F-box domain
FBA_1 PF07734 156 - 269 5.3e-06 F-box associated beta propeller domain
FBA_1 PF07734 302 - 417 5e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 3 cut(s) 175, 210, 1068
AclWI GGATC 4 cut(s) 729, 742, 1167, 1180
AcoI YGGCCR 1 cut(s) 373
AdeI CACNNNGTG 2 cut(s) 763, 1201
AfaI GTAC 1 cut(s) 1315
AfiI CCNNNNNNNGG 1 cut(s) 138
AflII CTTAAG 1 cut(s) 893
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 5 cut(s) 121, 188, 448, 886, 1009
AhdI GACNNNNNGTC 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 3 cut(s) 284, 614, 1052
AluI AGCT 3 cut(s) 284, 614, 1052
Alw26I GTCTC 3 cut(s) 133, 773, 1211
AlwI GGATC 4 cut(s) 729, 742, 1167, 1180
AlwNI CAGNNNCTG 2 cut(s) 168, 1055
AoxI GGCC 3 cut(s) 373, 511, 949
ApeKI GCWGC 1 cut(s) 27
AsiGI ACCGGT 1 cut(s) 635
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 112, 723, 819
AsuHPI GGTGA 7 cut(s) 164, 321, 650, 687, 1088, 1125, 1327
AvaII GGWCC 3 cut(s) 112, 723, 819
BalI TGGCCA 1 cut(s) 375
BamHI GGATCC 2 cut(s) 734, 1172
BbsI GAAGAC 6 cut(s) 208, 710, 830, 956, 1148, 1185
BbvI GCAGC 1 cut(s) 14
BccI CCATC 6 cut(s) 212, 322, 430, 725, 868, 1163
BceAI ACGGC 3 cut(s) 197, 760, 1198
BclI TGATCA 1 cut(s) 847
BcoDI GTCTC 3 cut(s) 133, 773, 1211
BfaI CTAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 893
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 3 cut(s) 112, 723, 819
BmeRI GACNNNNNGTC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 112, 723, 819
BmiI GGNNCC 3 cut(s) 736, 1174, 1305
BpiI GAAGAC 6 cut(s) 208, 710, 830, 956, 1148, 1185
BpmI CTGGAG 2 cut(s) 594, 1032
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 8 cut(s) 33, 143, 376, 499, 937, 1024, 1078, 1345
Bse3DI GCAATG 2 cut(s) 514, 952
Bse8I GATNNNNATC 1 cut(s) 267
BseGI GGATG 2 cut(s) 227, 249
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 2 cut(s) 514, 952
BseMII CTCAG 3 cut(s) 768, 1206, 1290
BseNI ACTGG 8 cut(s) 33, 143, 376, 499, 937, 1024, 1078, 1345
BseRI GAGGAG 2 cut(s) 597, 1035
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 13
BshFI GGCC 3 cut(s) 375, 513, 951
BshTI ACCGGT 1 cut(s) 635
BsiSI CCGG 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 3 cut(s) 133, 773, 1211
BsnI GGCC 3 cut(s) 375, 513, 951
Bsp143I GATC 5 cut(s) 262, 268, 734, 847, 1172
BspACI CCGC 3 cut(s) 175, 210, 1068
BspANI GGCC 3 cut(s) 375, 513, 951
BspCNI CTCAG 3 cut(s) 769, 1207, 1289
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 3 cut(s) 736, 1174, 1305
BspPI GGATC 4 cut(s) 729, 742, 1167, 1180
BspTI CTTAAG 1 cut(s) 893
BsrDI GCAATG 2 cut(s) 514, 952
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 8 cut(s) 33, 143, 376, 499, 937, 1024, 1078, 1345
BssAI RCCGGY 1 cut(s) 635
BssMI GATC 5 cut(s) 262, 268, 734, 847, 1172
Bst4CI ACNGT 2 cut(s) 52, 836
Bst6I CTCTTC 3 cut(s) 402, 521, 959
BstAFI CTTAAG 1 cut(s) 893
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 99, 275
BstDEI CTNAG 3 cut(s) 777, 1215, 1276
BstF5I GGATG 2 cut(s) 227, 249
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 265, 271, 737, 850, 1175
BstMAI GTCTC 3 cut(s) 133, 773, 1211
BstMBI GATC 5 cut(s) 262, 268, 734, 847, 1172
BstMWI GCNNNNNNNGC 2 cut(s) 36, 864
BstNSI RCATGY 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 14
BstV2I GAAGAC 6 cut(s) 208, 710, 830, 956, 1148, 1185
BstX2I RGATCY 2 cut(s) 734, 1172
BstYI RGATCY 2 cut(s) 734, 1172
BsuRI GGCC 3 cut(s) 375, 513, 951
BtsCI GGATG 2 cut(s) 227, 249
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 3 cut(s) 136, 627, 1338
Cac8I GCNNGC 2 cut(s) 99, 275
CaiI CAGNNNCTG 2 cut(s) 168, 1055
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 112, 723, 819
Csp6I GTAC 1 cut(s) 1314
CspAI ACCGGT 1 cut(s) 635
CspCI CAANNNNNGTGG 2 cut(s) 773, 808
CviAII CATG 3 cut(s) 274, 299, 917
CviQI GTAC 1 cut(s) 1314
DdeI CTNAG 3 cut(s) 777, 1215, 1276
DpnI GATC 5 cut(s) 264, 270, 736, 849, 1174
DpnII GATC 5 cut(s) 262, 268, 734, 847, 1172
DraIII CACNNNGTG 2 cut(s) 763, 1201
DriI GACNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 402, 521, 959
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 3 cut(s) 402, 521, 959
EciI GGCGGA 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 112, 723, 819
EcoO109I RGGNCCY 1 cut(s) 819
FaeI CATG 3 cut(s) 277, 302, 920
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 3 cut(s) 273, 298, 916
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 2 cut(s) 214, 236
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 594, 1032
HaeIII GGCC 3 cut(s) 375, 513, 951
HapII CCGG 1 cut(s) 636
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 277, 302, 920
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 391, 832
HindII GTYRAC 2 cut(s) 391, 832
HinfI GANTC 7 cut(s) 12, 117, 165, 781, 803, 1219, 1234
HpaII CCGG 1 cut(s) 636
HphI GGTGA 7 cut(s) 164, 321, 650, 687, 1088, 1125, 1327
Hpy166II GTNNAC 5 cut(s) 391, 550, 641, 832, 988
Hpy188III TCNNGA 7 cut(s) 257, 266, 347, 800, 851, 917, 1252
Hpy8I GTNNAC 5 cut(s) 391, 550, 641, 832, 988
HpyAV CCTTC 4 cut(s) 194, 696, 1073, 1134
HpyCH4III ACNGT 2 cut(s) 52, 836
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 4 cut(s) 30, 507, 945, 1289
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 864
HpyF3I CTNAG 3 cut(s) 777, 1215, 1276
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 3 cut(s) 277, 302, 920
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 262, 268, 734, 847, 1172
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 14
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 5 cut(s) 170, 221, 410, 622, 1060
MalI GATC 5 cut(s) 264, 270, 736, 849, 1174
MboI GATC 5 cut(s) 262, 268, 734, 847, 1172
MfeI CAATTG 1 cut(s) 1164
MflI RGATCY 2 cut(s) 734, 1172
MlsI TGGCCA 1 cut(s) 375
MluCI AATT 6 cut(s) 492, 930, 1164, 1284, 1309, 1320
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 2 cut(s) 775, 1213
MmeI TCCRAC 2 cut(s) 180, 1208
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 3 cut(s) 456, 894, 1348
Msp20I TGGCCA 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 893
MspI CCGG 1 cut(s) 636
MunI CAATTG 1 cut(s) 1164
MwoI GCNNNNNNNGC 2 cut(s) 36, 864
NdeII GATC 5 cut(s) 262, 268, 734, 847, 1172
NlaIII CATG 3 cut(s) 277, 302, 920
NlaIV GGNNCC 3 cut(s) 736, 1174, 1305
NmuCI GTSAC 2 cut(s) 170, 221
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PagI TCATGA 1 cut(s) 916
PfeI GAWTC 5 cut(s) 12, 117, 165, 803, 1234
PflMI CCANNNNNTGG 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 2 cut(s) 775, 1213
PpsI GAGTC 2 cut(s) 775, 1213
Ppu21I YACGTR 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 819
PspN4I GGNNCC 3 cut(s) 736, 1174, 1305
PspPI GGNCC 3 cut(s) 112, 723, 819
PspPPI RGGWCCY 1 cut(s) 819
PstNI CAGNNNCTG 2 cut(s) 168, 1055
PsuI RGATCY 2 cut(s) 734, 1172
RsaI GTAC 1 cut(s) 1315
RsaNI GTAC 1 cut(s) 1314
SaqAI TTAA 3 cut(s) 456, 894, 1348
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 5 cut(s) 262, 268, 734, 847, 1172
Sau96I GGNCC 3 cut(s) 112, 723, 819
SchI GAGTC 2 cut(s) 775, 1213
SinI GGWCC 3 cut(s) 112, 723, 819
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
SphI GCATGC 1 cut(s) 277
Sse9I AATT 6 cut(s) 492, 930, 1164, 1284, 1309, 1320
SsiI CCGC 3 cut(s) 175, 210, 1068
SspMI CTAG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 52, 836
TaiI ACGT 1 cut(s) 762
TaqI TCGA 2 cut(s) 348, 1251
TaqII GACCGA 1 cut(s) 417
TasI AATT 6 cut(s) 492, 930, 1164, 1284, 1309, 1320
TfiI GAWTC 5 cut(s) 12, 117, 165, 803, 1234
Tru1I TTAA 3 cut(s) 456, 894, 1348
Tru9I TTAA 3 cut(s) 456, 894, 1348
TscAI CASTG 3 cut(s) 143, 634, 1345
TseFI GTSAC 2 cut(s) 170, 221
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 2 cut(s) 170, 221
TspDTI ATGAA 7 cut(s) 238, 315, 524, 762, 830, 962, 1200
TspRI CASTG 3 cut(s) 143, 634, 1345
Van91I CCANNNNNTGG 1 cut(s) 138
Vha464I CTTAAG 1 cut(s) 893
VpaK11BI GGWCC 3 cut(s) 112, 723, 819
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 3 cut(s) 314, 506, 944
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.