Rh2AG663100

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000237
Physical Location & Seq
Forward (+)
87840532 .. 87862356
21825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG663100.1

Sequence Viewer

Length: 1020 bp
ATGGAGCACAGATTCTACCCCAAACGCTGCACCAGTAGCTTAGCAGAAACCGTAGCCAGCATAGAACAAGTCCTTACTGAAATCCTTGTGCGCGTGCCAGCTAAACCTCTAGTCCGCTTCAAATGCGTCTCCAAGCACTGGCTCTCTCTTATTTCCGACCCTAAATTCTGTCACCGCCACACCCTTCAAAACCCTAACACTCCAGTCTCTGCTGTCCTTTGTGACAGATCCTGCCGCCCCTTTTGTTTCGTCCCTATTGATTTGGATCACATACGTGGAACCGGTAGTACTAGTAGTAATATTAGGAACCATGGAAACCAAAACCCATCTGGGTCTGGTTCACCTACTTGTAATCCTCTTGATTTTGTACAGAACCAATATGATTATGGCATCAAAACTGTCCACACCTTTCCTGTCAATCGTCTTCATTTTGATCACAAAAGCCCATCTCGCTCTGGTTCACCCCCTTTCAATCCTCTTACGTTTGCTCATAACCAATATCATGATGACATCATAATTATCCAGTCCTGCAATGGCCTCTTCCTGTGTCTTCTTTTTCATAATAAACTGAACCCCCCATATCTTATTTTCAATCCTACAACAAACCAGTTCTCTACACTTATTCCTCCTCCAACTACTGCTGTTACCACCGCTACTGGTGAACGAAAAGAACACTATGTCTCTACTGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGGTCTGTCTTCGGACCATTGATGGATCTGAAGACGGCACTATCTATCACATAGTGATATATTCATCTGAGACCCAAAGTTGGAGGATTCTCGATTCTTCTTTCAAGAGGAAAATTCACACTATAAACAGACAGAATCACAAAGAGAAGTTAAAAGAAAATACACAAAACAAAAGCCATCGAATATACCTTGGAACATCATTCCCACATGTTTTTGCAATGAAAACTAGTCCTGAAACAACACTTGTAGCTGCACTGGCTCTCCTAGAATGCAAAATTTCTCCGCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

339

Amino Acids

38.28

Weight (kDa)

9.15

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 58 1.9e-06 F-box domain
FBA_1 PF07734 164 - 283 5.1e-10 F-box associated beta propeller domain
FBA_3 PF08268 164 - 278 1.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AccII CGCG 1 cut(s) 93
AciI CCGC 5 cut(s) 115, 175, 235, 651, 1010
AclWI GGATC 3 cut(s) 222, 273, 760
AcsI RAATTY 3 cut(s) 164, 840, 1002
AcuI CTGAAG 1 cut(s) 777
AdeI CACNNNGTG 1 cut(s) 781
AfaI GTAC 2 cut(s) 289, 369
AfiI CCNNNNNNNGG 2 cut(s) 138, 807
AflIII ACRYGT 1 cut(s) 934
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 5 cut(s) 121, 188, 472, 592, 832
AhlI ACTAGT 2 cut(s) 290, 953
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 3 cut(s) 39, 101, 977
AluI AGCT 3 cut(s) 39, 101, 977
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 4 cut(s) 133, 211, 685, 791
AlwI GGATC 3 cut(s) 222, 273, 760
AlwNI CAGNNNCTG 2 cut(s) 209, 231
AoxI GGCC 1 cut(s) 535
ApeKI GCWGC 2 cut(s) 27, 977
ApoI RAATTY 3 cut(s) 164, 840, 1002
AsiGI ACCGGT 1 cut(s) 281
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 741
AsuHPI GGTGA 5 cut(s) 164, 333, 453, 671, 705
AvaII GGWCC 1 cut(s) 741
BbsI GAAGAC 4 cut(s) 416, 542, 728, 765
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 14, 964
BccI CCATC 4 cut(s) 334, 454, 743, 912
BceAI ACGGC 1 cut(s) 778
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 4 cut(s) 133, 211, 685, 791
BcuI ACTAGT 2 cut(s) 290, 953
BfaI CTAG 4 cut(s) 110, 291, 954, 992
BisI GCNGC 3 cut(s) 28, 235, 978
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 3 cut(s) 29, 236, 979
BmcAI AGTACT 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 2 cut(s) 280, 308
BmsI GCATC 1 cut(s) 399
BpiI GAAGAC 4 cut(s) 416, 542, 728, 765
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 2 cut(s) 310, 916
BsaWI WCCGGW 1 cut(s) 281
BsaXI ACNNNNNCTCC 2 cut(s) 972, 1002
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 807
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 7 cut(s) 33, 143, 203, 523, 607, 661, 987
Bse3DI GCAATG 2 cut(s) 538, 951
Bse8I GATNNNNATC 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 310, 916
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 138, 807
BseMI GCAATG 2 cut(s) 538, 951
BseMII CTCAG 1 cut(s) 786
BseNI ACTGG 7 cut(s) 33, 143, 203, 523, 607, 661, 987
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 2 cut(s) 14, 964
BsgI GTGCAG 2 cut(s) 13, 963
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 537
BshTI ACCGGT 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 138, 807
BsmAI GTCTC 4 cut(s) 133, 211, 685, 791
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 1001
BsnI GGCC 1 cut(s) 537
Bso31I GGTCTC 1 cut(s) 791
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 227, 265, 433, 752
Bsp1720I GCTNAGC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 5 cut(s) 115, 175, 235, 651, 1010
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 1 cut(s) 787
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 280, 308
BspPI GGATC 3 cut(s) 222, 273, 760
BspTNI GGTCTC 1 cut(s) 791
BsrDI GCAATG 2 cut(s) 538, 951
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 7 cut(s) 33, 143, 203, 523, 607, 661, 987
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 310, 916
BssMI GATC 4 cut(s) 227, 265, 433, 752
BssT1I CCWWGG 2 cut(s) 310, 916
Bst4CI ACNGT 2 cut(s) 52, 400
Bst6I CTCTTC 1 cut(s) 545
BstAUI TGTACA 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 58, 95, 99, 1014
BstDEI CTNAG 2 cut(s) 40, 795
BstDSI CCRYGG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 4 cut(s) 230, 268, 436, 755
BstMAI GTCTC 4 cut(s) 133, 211, 685, 791
BstMBI GATC 4 cut(s) 227, 265, 433, 752
BstMWI GCNNNNNNNGC 4 cut(s) 36, 123, 450, 983
BstNSI RCATGY 1 cut(s) 938
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 14, 964
BstV2I GAAGAC 4 cut(s) 416, 542, 728, 765
BstX2I RGATCY 2 cut(s) 227, 752
BstYI RGATCY 2 cut(s) 227, 752
BsuRI GGCC 1 cut(s) 537
BtgI CCRYGG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 136, 980
Cac8I GCNNGC 4 cut(s) 58, 95, 99, 1014
CaiI CAGNNNCTG 2 cut(s) 209, 231
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 288, 368
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 4 cut(s) 311, 503, 935, 1017
CviQI GTAC 2 cut(s) 288, 368
DdeI CTNAG 2 cut(s) 40, 795
DpnI GATC 4 cut(s) 229, 267, 435, 754
DpnII GATC 4 cut(s) 227, 265, 433, 752
DraIII CACNNNGTG 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Eco130I CCWWGG 2 cut(s) 310, 916
Eco31I GGTCTC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 777
EcoT14I CCWWGG 2 cut(s) 310, 916
ErhI CCWWGG 2 cut(s) 310, 916
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 4 cut(s) 314, 506, 938, 1020
FaqI GGGAC 1 cut(s) 236
FatI CATG 4 cut(s) 310, 502, 934, 1016
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 28, 235, 978
Fsp4HI GCNGC 3 cut(s) 28, 235, 978
FspBI CTAG 4 cut(s) 110, 291, 954, 992
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 28, 235, 978
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 537
HapII CCGG 1 cut(s) 282
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 314, 506, 938, 1020
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 4 cut(s) 12, 814, 821, 862
HpaII CCGG 1 cut(s) 282
HphI GGTGA 5 cut(s) 164, 333, 453, 671, 705
Hpy166II GTNNAC 4 cut(s) 341, 403, 461, 662
Hpy188I TCNGA 4 cut(s) 157, 741, 757, 796
Hpy188III TCNNGA 5 cut(s) 359, 503, 818, 832, 959
Hpy8I GTNNAC 4 cut(s) 341, 403, 461, 662
HpyAV CCTTC 2 cut(s) 194, 714
HpyCH4III ACNGT 2 cut(s) 52, 400
HpyCH4IV ACGT 2 cut(s) 274, 482
HpyCH4V TGCA 5 cut(s) 30, 531, 944, 980, 999
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 123, 450, 983
HpyF3I CTNAG 2 cut(s) 40, 795
HpySE526I ACGT 2 cut(s) 274, 482
Hsp92II CATG 4 cut(s) 314, 506, 938, 1020
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 227, 265, 433, 752
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 14, 964
LweI GCATC 1 cut(s) 399
MaeI CTAG 4 cut(s) 110, 291, 954, 992
MaeII ACGT 2 cut(s) 274, 482
MaeIII GTNAC 3 cut(s) 170, 221, 643
MalI GATC 4 cut(s) 229, 267, 435, 754
MboI GATC 4 cut(s) 227, 265, 433, 752
MboII GAAGA 6 cut(s) 416, 532, 542, 728, 770, 816
MflI RGATCY 2 cut(s) 227, 752
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 164, 516, 840, 1002
MmeI TCCRAC 3 cut(s) 180, 656, 788
MnlI CCTC 9 cut(s) 117, 366, 486, 548, 636, 639, 726, 804, 828
MseI TTAA 1 cut(s) 878
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 1001
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 4 cut(s) 36, 123, 450, 983
NcoI CCATGG 1 cut(s) 310
NdeII GATC 4 cut(s) 227, 265, 433, 752
NlaIII CATG 4 cut(s) 314, 506, 938, 1020
NlaIV GGNNCC 2 cut(s) 280, 308
NmuCI GTSAC 2 cut(s) 170, 221
NspI RCATGY 1 cut(s) 938
OliI CACNNNNGTG 1 cut(s) 273
PagI TCATGA 1 cut(s) 502
PciI ACATGT 1 cut(s) 934
PctI GAATGC 1 cut(s) 1001
PfeI GAWTC 4 cut(s) 12, 814, 821, 862
PflMI CCANNNNNTGG 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 3 cut(s) 29, 236, 979
Ppu21I YACGTR 1 cut(s) 275
PscI ACATGT 1 cut(s) 934
PspN4I GGNNCC 2 cut(s) 280, 308
PspPI GGNCC 1 cut(s) 741
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PstNI CAGNNNCTG 2 cut(s) 209, 231
PsuI RGATCY 2 cut(s) 227, 752
RsaI GTAC 2 cut(s) 289, 369
RsaNI GTAC 2 cut(s) 288, 368
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 878
SatI GCNGC 3 cut(s) 28, 235, 978
Sau3AI GATC 4 cut(s) 227, 265, 433, 752
Sau96I GGNCC 1 cut(s) 741
ScaI AGTACT 1 cut(s) 289
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 399
SinI GGWCC 1 cut(s) 741
SmiMI CAYNNNNRTG 1 cut(s) 273
SpeI ACTAGT 2 cut(s) 290, 953
Sse9I AATT 4 cut(s) 164, 516, 840, 1002
SsiI CCGC 5 cut(s) 115, 175, 235, 651, 1010
SspI AATATT 1 cut(s) 301
SspMI CTAG 4 cut(s) 110, 291, 954, 992
StyI CCWWGG 2 cut(s) 310, 916
TaaI ACNGT 2 cut(s) 52, 400
TaiI ACGT 2 cut(s) 277, 485
TaqI TCGA 2 cut(s) 819, 907
TasI AATT 4 cut(s) 164, 516, 840, 1002
TatI WGTACW 2 cut(s) 287, 367
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 4 cut(s) 12, 814, 821, 862
Tru1I TTAA 1 cut(s) 878
Tru9I TTAA 1 cut(s) 878
TscAI CASTG 2 cut(s) 143, 987
TseFI GTSAC 2 cut(s) 170, 221
TseI GCWGC 2 cut(s) 27, 977
Tsp45I GTSAC 2 cut(s) 170, 221
TspDTI ATGAA 4 cut(s) 416, 548, 780, 962
TspRI CASTG 2 cut(s) 143, 987
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 3 cut(s) 164, 840, 1002
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 3 cut(s) 326, 383, 530
XspI CTAG 4 cut(s) 110, 291, 954, 992
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.