Rmu_co8160300.1_g000001

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8160300.1
OG0000237
Physical Location & Seq
Forward (+)
1 .. 661
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8160300.1_g000001.1.cds

Sequence Viewer

Length: 661 bp
taactgtaatcctctgaattttggtcacaacctatatgctattgagattgtccagtcctgcaatggcctcttcttgtgctgtcccctacctgcagaagactcttcattctccaccactacaactagtaaacctctttattatgttctcaatcctacaaccaaccagttctccgcacttactcctccagctgctgctgctgccactactggtatacccagagtcttcggctgtgctttggcttttgacccttccaaatcacctcattacaaagtggtcttcatttggtgcgtcaatgaaccaattcaggctggctggtgcccgtaccatcacatagagatatattcgtctgagactcgaagttggaggcttctcgattctactttcgacactcaacctcaagtccgctacgaagagggagtatactgcaatggcgcagttcattgggtgggcattgattgtgagatgtcatactatcacatagatgaagaacgtgttggattggttgatggtttccctaagagtcacgagaagaatttggaaacgaggctgtctagatattttcgggagtctcatggtggtggccatttgcatcttattgatatttatggatattctcttactaaatttgaagtcatggagatggggagagactactctggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

220

Amino Acids

24.85

Weight (kDa)

5.51

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 212, 421
AciI CCGC 2 cut(s) 172, 404
AcoI YGGCCR 1 cut(s) 581
AcsI RAATTY 3 cut(s) 17, 533, 624
AfaI GTAC 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 1 cut(s) 630
AhlI ACTAGT 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw26I GTCTC 3 cut(s) 345, 574, 643
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 2 cut(s) 65, 581
ApeKI GCWGC 4 cut(s) 189, 192, 195, 198
ApoI RAATTY 3 cut(s) 17, 533, 624
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 321
BalI TGGCCA 1 cut(s) 583
BanI GGYRCC 1 cut(s) 316
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 3 cut(s) 103, 215, 269
BbvI GCAGC 4 cut(s) 176, 179, 182, 185
BccI CCATC 3 cut(s) 334, 501, 635
BcoDI GTCTC 3 cut(s) 345, 574, 643
BcuI ACTAGT 1 cut(s) 123
BfaI CTAG 2 cut(s) 124, 553
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 4 cut(s) 190, 193, 196, 199
BlsI GCNGC 4 cut(s) 191, 194, 197, 200
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 599
BpiI GAAGAC 3 cut(s) 103, 215, 269
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse1I ACTGG 3 cut(s) 53, 164, 212
Bse3DI GCAATG 2 cut(s) 68, 434
BseMI GCAATG 2 cut(s) 68, 434
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 3 cut(s) 53, 164, 212
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 4 cut(s) 176, 179, 182, 185
BshFI GGCC 2 cut(s) 67, 583
BshNI GGYRCC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 3 cut(s) 345, 574, 643
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 67, 583
Bsp1286I GDGCHC 1 cut(s) 321
BspACI CCGC 2 cut(s) 172, 404
BspANI GGCC 2 cut(s) 67, 583
BspCNI CTCAG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 316
BsrDI GCAATG 2 cut(s) 68, 434
BsrI ACTGG 3 cut(s) 53, 164, 212
BssNAI GTATAC 2 cut(s) 213, 422
BssSI CACGAG 1 cut(s) 525
Bst1107I GTATAC 2 cut(s) 213, 422
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 6
Bst6I CTCTTC 3 cut(s) 75, 107, 406
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 349, 517
BstHHI GCGC 1 cut(s) 435
BstMAI GTCTC 3 cut(s) 345, 574, 643
BstMWI GCNNNNNNNGC 2 cut(s) 195, 198
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 4 cut(s) 176, 179, 182, 185
BstV2I GAAGAC 3 cut(s) 103, 215, 269
BstZ17I GTATAC 2 cut(s) 213, 422
BsuRI GGCC 2 cut(s) 67, 583
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 192
CfoI GCGC 1 cut(s) 435
CseI GACGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 323
CviAII CATG 2 cut(s) 573, 635
CviJI RGCY 9 cut(s) 67, 189, 229, 240, 309, 313, 368, 548, 583
CviKI_1 RGCY 9 cut(s) 67, 189, 229, 240, 309, 313, 368, 548, 583
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 2 cut(s) 349, 517
EaeI YGGCCR 1 cut(s) 581
Eam1104I CTCTTC 3 cut(s) 75, 107, 406
EarI CTCTTC 3 cut(s) 75, 107, 406
FaeI CATG 2 cut(s) 576, 638
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 572, 634
FblI GTMKAC 2 cut(s) 212, 421
Fnu4HI GCNGC 4 cut(s) 190, 193, 196, 199
Fsp4HI GCNGC 4 cut(s) 190, 193, 196, 199
FspBI CTAG 2 cut(s) 124, 553
GlaI GCGC 1 cut(s) 434
GluI GCNGC 4 cut(s) 190, 193, 196, 199
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 2 cut(s) 67, 583
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 576, 638
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 6 cut(s) 99, 220, 353, 375, 521, 567
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 3 cut(s) 129, 213, 422
Hpy188I TCNGA 2 cut(s) 16, 350
Hpy188III TCNNGA 4 cut(s) 372, 525, 553, 564
Hpy8I GTNNAC 3 cut(s) 129, 213, 422
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 4 cut(s) 61, 93, 427, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 198
HpyF3I CTNAG 2 cut(s) 349, 517
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 2 cut(s) 576, 638
HspAI GCGC 1 cut(s) 433
Lsp1109I GCAGC 4 cut(s) 176, 179, 182, 185
LweI GCATC 1 cut(s) 599
MaeI CTAG 2 cut(s) 124, 553
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 24, 522
MboII GAAGA 8 cut(s) 62, 94, 108, 215, 269, 423, 498, 542
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 583
MluCI AATT 4 cut(s) 17, 301, 533, 624
MluNI TGGCCA 1 cut(s) 583
MlyI GAGTC 5 cut(s) 93, 229, 347, 530, 576
MmeI TCCRAC 2 cut(s) 342, 476
MnlI CCTC 9 cut(s) 22, 78, 142, 193, 271, 358, 406, 407, 538
Mox20I TGGCCA 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 301
MscI TGGCCA 1 cut(s) 583
MslI CAYNNNNRTG 3 cut(s) 481, 577, 639
Msp20I TGGCCA 1 cut(s) 583
MspA1I CMGCKG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 195, 198
NlaIII CATG 2 cut(s) 576, 638
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 2 cut(s) 24, 522
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 4 cut(s) 191, 194, 197, 200
PleI GAGTC 5 cut(s) 93, 228, 347, 529, 575
PpsI GAGTC 5 cut(s) 93, 228, 347, 529, 575
PspN4I GGNNCC 1 cut(s) 318
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 3 cut(s) 481, 577, 639
SatI GCNGC 4 cut(s) 190, 193, 196, 199
SchI GAGTC 5 cut(s) 93, 229, 347, 530, 576
SduI GDGCHC 1 cut(s) 321
SetI ASST 7 cut(s) 34, 92, 134, 191, 263, 398, 494
SfaNI GCATC 1 cut(s) 599
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 3 cut(s) 481, 577, 639
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
SpeI ACTAGT 1 cut(s) 123
Sse9I AATT 4 cut(s) 17, 301, 533, 624
SsiI CCGC 2 cut(s) 172, 404
SspMI CTAG 2 cut(s) 124, 553
TaaI ACNGT 1 cut(s) 6
TaiI ACGT 1 cut(s) 494
TaqI TCGA 3 cut(s) 356, 373, 385
TasI AATT 4 cut(s) 17, 301, 533, 624
TfiI GAWTC 1 cut(s) 375
TseFI GTSAC 2 cut(s) 24, 522
TseI GCWGC 4 cut(s) 189, 192, 195, 198
Tsp45I GTSAC 2 cut(s) 24, 522
TspDTI ATGAA 5 cut(s) 94, 269, 310, 429, 499
XapI RAATTY 3 cut(s) 17, 533, 624
XbaI TCTAGA 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XmiI GTMKAC 2 cut(s) 212, 421
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 2 cut(s) 124, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.