Rh4AG064800

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000237
Physical Location & Seq
Forward (+)
13790462 .. 13794453
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG064800.1

Sequence Viewer

Length: 1080 bp
ATGGCTGATATTCCTGATAAAGAACTCCATTGTTGCGCAAAAAGGACGAAGGTTACAGGCAGCGGGAACTACCTAAAATCCTGTAGTACAAGTAGTAGCACTACCAGCAGCAGTGTCAGTTTAGCAGAAATTATAGCCAGCACGGAAGAACTCCTTACAGAAATCCTACTGCGGGTGCCAGCTCGAACTCTGGTCCGCTTCAAATGTGTTTCCAAGCATTGGCTCTCTCTTATATCTGACCCCAAATTCTGTCACCGCCACACCATTTGGAACCAAAACTCCTCCGTCTCCGCAGTCTTTGGTGACAGATCCACAAACTTTTTTTCCATCACTTTTCCTCATGATCATGACCATAACCATAACCCCGGATCATCGCGCTGCAATCCTCTTAATTTTGTTCAAAACCAAAATGATTGCATCGAGATTATCCACTCCTGCAATGGCCTCTTCTTGTGCCATCCCATCAATGCTACAAGTACTAGTAGAACCCCATATTTTGTTCTCAATCCCACAACCAACCAGTTCTTGACACTTACAATTCCCCCAGCTGCTGCTGCTACTTCTAATGGTCAACAGATACAAACCCATATTATTGGTTGTGCTCTGGCTTTTGACCCTTCCAAATCACCTCATTATAAGGTTATATGCCTTGAGACCACTACTGGTCATAAATATTGCCCATACTACCAAATACAAATATATTCGTCTGAGACTCGAAGTTGGAGGCTTCTCAATTCTACTTTTATAAGGCAAGATCAAACTCTCTATGAACAGGGGGTATATTGGAACGGCGCAATTCATTGGGTAGGCCTGGTTTGTGAAATGTCATACTATCAAGTAGATGAAGAGCTTGTCGGATTGGTTGATAGTCCTCCTCATTGTTACGAGAAGAAATGGATGGACAGCGATCAAACTGATTACGGGATGATTGCTATTCTTCTGGCCTTGGTGGTGGTCGGTTCGGTCCTTTTCCTGCCCCTGCTCATCGGTCCTCTGCAGCCCCCGTCCGTCGCCGTTATGCTGATAATCCCAGTGGTTCTGGTGGCTGCGTTGATCTTCCTCCACAAAGCCTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

359

Amino Acids

40.04

Weight (kDa)

6.74

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 49 - 85 5.5e-08 F-box domain
FBA_3 PF08268 104 - 272 1.6e-11 F-box associated beta propeller domain
FBA_1 PF07734 131 - 270 2.1e-11 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 139 - 271 1.7e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 636, 746
Acc16I TGCGCA 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 219
AccII CGCG 1 cut(s) 376
AciI CCGC 5 cut(s) 63, 172, 196, 256, 291
AclWI GGATC 2 cut(s) 303, 376
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 88, 478
AfiI CCNNNNNNNGG 2 cut(s) 172, 219
AgsI TTSAA 2 cut(s) 202, 401
AhlI ACTAGT 1 cut(s) 479
AjnI CCWGG 1 cut(s) 810
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 182, 548, 850
AluI AGCT 3 cut(s) 182, 548, 850
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 3 cut(s) 292, 647, 704
AlwI GGATC 2 cut(s) 303, 376
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 3 cut(s) 442, 808, 942
ApeKI GCWGC 8 cut(s) 60, 108, 378, 548, 551, 554, 997, 1046
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 3 cut(s) 38, 378, 794
AspS9I GGNCC 3 cut(s) 193, 964, 989
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 3 cut(s) 245, 314, 618
AvaII GGWCC 3 cut(s) 193, 964, 989
BanI GGYRCC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 8 cut(s) 72, 120, 365, 535, 538, 541, 1009, 1033
BccI CCATC 4 cut(s) 335, 465, 470, 892
BceAI ACGGC 2 cut(s) 805, 998
BciT130I CCWGG 1 cut(s) 812
BclI TGATCA 1 cut(s) 343
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 292, 647, 704
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 2 cut(s) 82, 995
BisI GCNGC 8 cut(s) 61, 109, 379, 549, 552, 555, 998, 1047
BlsI GCNGC 8 cut(s) 62, 110, 380, 550, 553, 556, 999, 1048
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 366, 812
Bme18I GGWCC 3 cut(s) 193, 964, 989
BmgT120I GGNCC 3 cut(s) 193, 964, 989
BmiI GGNNCC 2 cut(s) 177, 272
BmrFI CCNGG 2 cut(s) 366, 812
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 1025
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 364, 945
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 219
Bse1I ACTGG 3 cut(s) 520, 667, 1031
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 1 cut(s) 812
BseDI CCNNGG 2 cut(s) 364, 945
BseGI GGATG 3 cut(s) 457, 903, 930
BseLI CCNNNNNNNGG 2 cut(s) 172, 219
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 520, 667, 1031
BseRI GAGGAG 2 cut(s) 271, 864
BseXI GCAGC 8 cut(s) 72, 120, 365, 535, 538, 541, 1009, 1033
BseYI CCCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 3 cut(s) 444, 810, 944
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 172, 219
BsmAI GTCTC 3 cut(s) 292, 647, 704
BsmBI CGTCTC 1 cut(s) 292
BsnI GGCC 3 cut(s) 444, 810, 944
Bso31I GGTCTC 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
BspACI CCGC 5 cut(s) 63, 172, 196, 256, 291
BspANI GGCC 3 cut(s) 444, 810, 944
BspCNI CTCAG 1 cut(s) 700
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 2 cut(s) 340, 346
BspLI GGNNCC 2 cut(s) 177, 272
BspMAI CTGCAG 1 cut(s) 999
BspPI GGATC 2 cut(s) 303, 376
BspQI GCTCTTC 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 3 cut(s) 520, 667, 1031
BssECI CCNNGG 2 cut(s) 364, 945
BssMI GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
BssT1I CCWWGG 1 cut(s) 945
Bst2UI CCWGG 1 cut(s) 812
Bst6I CTCTTC 2 cut(s) 452, 840
BstC8I GCNNGC 2 cut(s) 139, 180
BstDEI CTNAG 1 cut(s) 708
BstF5I GGATG 3 cut(s) 457, 903, 930
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 3 cut(s) 38, 378, 794
BstKTI GATC 6 cut(s) 311, 346, 371, 757, 910, 1056
BstMAI GTCTC 3 cut(s) 292, 647, 704
BstMBI GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
BstMWI GCNNNNNNNGC 2 cut(s) 105, 554
BstNI CCWGG 1 cut(s) 812
BstSCI CCNGG 2 cut(s) 364, 810
BstSFI CTRYAG 2 cut(s) 82, 995
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 8 cut(s) 72, 120, 365, 535, 538, 541, 1009, 1033
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 3 cut(s) 444, 810, 944
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 457, 903, 930
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 1038
Cac8I GCNNGC 2 cut(s) 139, 180
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 2 cut(s) 340, 346
CfoI GCGC 3 cut(s) 38, 378, 794
Cfr13I GGNCC 3 cut(s) 193, 964, 989
Csp6I GTAC 2 cut(s) 87, 477
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 2 cut(s) 341, 347
CviQI GTAC 2 cut(s) 87, 477
DdeI CTNAG 1 cut(s) 708
DpnI GATC 6 cut(s) 310, 345, 370, 756, 909, 1055
DpnII GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
Eam1104I CTCTTC 2 cut(s) 452, 840
EarI CTCTTC 2 cut(s) 452, 840
Eco130I CCWWGG 1 cut(s) 945
Eco147I AGGCCT 1 cut(s) 810
Eco31I GGTCTC 1 cut(s) 647
Eco47I GGWCC 3 cut(s) 193, 964, 989
EcoRII CCWGG 1 cut(s) 810
EcoT14I CCWWGG 1 cut(s) 945
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 2 cut(s) 344, 350
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 2 cut(s) 340, 346
FauI CCCGC 2 cut(s) 56, 165
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 8 cut(s) 61, 109, 379, 549, 552, 555, 998, 1047
FokI GGATG 3 cut(s) 444, 910, 937
Fsp4HI GCNGC 8 cut(s) 61, 109, 379, 549, 552, 555, 998, 1047
FspBI CTAG 1 cut(s) 480
FspI TGCGCA 1 cut(s) 37
GlaI GCGC 3 cut(s) 37, 377, 793
GluI GCNGC 8 cut(s) 61, 109, 379, 549, 552, 555, 998, 1047
GsaI CCCAGC 1 cut(s) 548
HaeIII GGCC 3 cut(s) 444, 810, 944
HapII CCGG 1 cut(s) 366
HhaI GCGC 3 cut(s) 38, 378, 794
Hin1II CATG 2 cut(s) 344, 350
Hin6I GCGC 3 cut(s) 36, 376, 792
HinP1I GCGC 3 cut(s) 36, 376, 792
HincII GTYRAC 1 cut(s) 572
HindII GTYRAC 1 cut(s) 572
HinfI GANTC 1 cut(s) 712
HpaII CCGG 1 cut(s) 366
HphI GGTGA 3 cut(s) 245, 314, 618
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 3 cut(s) 238, 709, 857
Hpy188III TCNNGA 5 cut(s) 14, 341, 347, 421, 526
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 1 cut(s) 1013
HpyAV CCTTC 2 cut(s) 43, 627
HpyCH4V TGCA 4 cut(s) 381, 417, 438, 997
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 554
HpyF3I CTNAG 1 cut(s) 708
Hsp92II CATG 2 cut(s) 344, 350
HspAI GCGC 3 cut(s) 36, 376, 792
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
LguI GCTCTTC 1 cut(s) 840
Lsp1109I GCAGC 8 cut(s) 72, 120, 365, 535, 538, 541, 1009, 1033
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 4 cut(s) 52, 251, 302, 881
MalI GATC 6 cut(s) 310, 345, 370, 756, 909, 1055
MboI GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
MboII GAAGA 6 cut(s) 158, 439, 857, 901, 929, 1048
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 6 cut(s) 129, 245, 391, 537, 733, 795
MlyI GAGTC 1 cut(s) 706
MmeI TCCRAC 2 cut(s) 701, 835
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 63, 548
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 2 cut(s) 366, 812
MvaI CCWGG 1 cut(s) 812
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 105, 554
NciI CCSGG 1 cut(s) 366
NdeII GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
NlaIII CATG 2 cut(s) 344, 350
NlaIV GGNNCC 2 cut(s) 177, 272
NmuCI GTSAC 2 cut(s) 251, 302
NsbI TGCGCA 1 cut(s) 37
PagI TCATGA 2 cut(s) 340, 346
PceI AGGCCT 1 cut(s) 810
PciSI GCTCTTC 1 cut(s) 840
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 8 cut(s) 62, 110, 380, 550, 553, 556, 999, 1048
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PsiI TTATAA 2 cut(s) 636, 746
Psp6I CCWGG 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 2 cut(s) 177, 272
PspPI GGNCC 3 cut(s) 193, 964, 989
PstI CTGCAG 1 cut(s) 999
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 88, 478
RsaNI GTAC 2 cut(s) 87, 477
RseI CAYNNNNRTG 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 8 cut(s) 61, 109, 379, 549, 552, 555, 998, 1047
Sau3AI GATC 6 cut(s) 308, 343, 368, 754, 907, 1053
Sau96I GGNCC 3 cut(s) 193, 964, 989
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 706
ScrFI CCNGG 2 cut(s) 366, 812
SduI GDGCHC 1 cut(s) 604
SetI ASST 7 cut(s) 54, 75, 184, 550, 631, 642, 852
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 2 cut(s) 82, 995
SinI GGWCC 3 cut(s) 193, 964, 989
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 6 cut(s) 129, 245, 391, 537, 733, 795
SseBI AGGCCT 1 cut(s) 810
SsiI CCGC 5 cut(s) 63, 172, 196, 256, 291
SspI AATATT 1 cut(s) 674
SspMI CTAG 1 cut(s) 480
StuI AGGCCT 1 cut(s) 810
StyD4I CCNGG 2 cut(s) 364, 810
StyI CCWWGG 1 cut(s) 945
TaqI TCGA 4 cut(s) 184, 420, 715, 1073
TaqII GACCGA 2 cut(s) 952, 977
TasI AATT 6 cut(s) 129, 245, 391, 537, 733, 795
TatI WGTACW 2 cut(s) 86, 476
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 118, 1038
TseFI GTSAC 2 cut(s) 251, 302
TseI GCWGC 8 cut(s) 60, 108, 378, 548, 551, 554, 997, 1046
Tsp45I GTSAC 2 cut(s) 251, 302
TspDTI ATGAA 3 cut(s) 783, 788, 858
TspGWI ACGGA 3 cut(s) 158, 274, 997
TspRI CASTG 2 cut(s) 118, 1038
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 3 cut(s) 193, 964, 989
XapI RAATTY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 1 cut(s) 480
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.