Rroxscaffold_5G00343010

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000237
Physical Location & Seq
Forward (+)
12205761 .. 12210774
5014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343010.1

Sequence Viewer

Length: 1290 bp
ATGGAGACTGCCTGTCCAGAATCACCCAAACATTCCTTACCAGCTGAAACCATAGCCAACCACGACGATCTCCTCTCGCAGATCCTCGTCCGCTTGGAAGCCAAGTCCCTCATCCGCTACAAATCCGTCTCCAAGCACTGGCTCTCTCTCATTTCCAGCCCCAAATTCCGTGAACGCCACACCCTCCGGAACCCTAGCCCTACCGTCTCCGCCTTCTTCTTCCTCTCCACCAACCAACGCCTCAGCTTCATCTCTCTCTCCGACGACGAAACTCGATGCGGATCCCACTCCAATCCGCTCGATTCGGTCCCGGAGCTGCAAGGAATCAAGATTCTGCAGTCCTGCAATGGCTTGCTCCTCTGCTGCTCTGGCGGAGAAGAAACAACCCGACGAGCATACTATGTGGTCAATCCCACGGCCAGTCAGTTCTCGAGACTTCCCTCTCCTCCATATGCTTGTCAATTCGATGATAGTTTGGGTATTGCTTTGGCTTTTGATCCTTGTAGAACTGGAAATGTTCATTACAAAGTGGTTTCTGTTTGGATGACTAGTCGAAATACTATAGGGATTGGGATATATGCATCGGAGACTCGGAGTTGGAGTGTAGGCTTGAGTCAAGTCCACTTCAGGCAGTGCCAATTTGAAGTGGACTTCGGCCGCGGGGTGTACTGCAATGGAGCAATTCATTGGCTAAACCACAAGGATGAGTTGTTCTACTGTCACATTGGTGATGGCTCGGATGAAAAGCCGGTGAGGGGTGGAGTTTTGTCTAGTCCACTTGGTTTAATGTTTGATAGGGAGTATAGGTATTTTGGGGAGTCTTGTGGCCATTTGCACCTAATTGATATTTTCAAGCCATGTGTTAATCAGTTTGATGTAAGGGAATTGGAGCCGGATTACTCTGGCTGGGTTGTCAAATACCGTGTTGATCTTGATCCGATAAATAGGCCTTGTATTAATGAGATGCTGACGCCCAAGGACTACTCTGGCTGGTTTGTCAAGTGCAAAGCTGATTTGTATTCCAGAAGCTATTCCTTTCAGGAGGTGGTTGAGTACTATTTGGATCGATATTATCAATTTGTTGTTCTATCTCTTACTCAAGAAGAGAATGGAGGGGATCTGTGTTTGTTGCTGTATTTTCGTGCCAAGGTCATCTCTTACAATCTTAGGGATAAGACATTCAAGAAACTATGTGACTTAGCTCCGGAAGGCACCGCTGAGACCCAGAGATCATTAAAAGTTGAATGGCTGGAGGCTTATAATCATATGGGGAGTTTGGCTTGCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

429

Amino Acids

48.91

Weight (kDa)

6.24

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 58 3e-06 F-box domain
FBA_1 PF07734 95 - 234 1.2e-10 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 109 - 235 3.2e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AccB1I GGYRCC 1 cut(s) 1211
AccB7I CCANNNNNTGG 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 298
AccII CGCG 1 cut(s) 660
AccIII TCCGGA 2 cut(s) 186, 1204
AciI CCGC 9 cut(s) 91, 115, 210, 279, 296, 372, 658, 660, 1215
AclWI GGATC 7 cut(s) 76, 276, 289, 491, 929, 1071, 1125
AcoI YGGCCR 3 cut(s) 417, 655, 826
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 610
AcyI GRCGYC 1 cut(s) 971
AfaI GTAC 2 cut(s) 668, 1055
AfiI CCNNNNNNNGG 2 cut(s) 138, 755
AgsI TTSAA 4 cut(s) 644, 853, 1183, 1244
AhdI GACNNNNNGTC 1 cut(s) 12
AhlI ACTAGT 1 cut(s) 548
AleI CACNNNNGTG 1 cut(s) 726
AloI GAACNNNNNNTCC 2 cut(s) 695, 727
AluBI AGCT 6 cut(s) 44, 246, 316, 1010, 1029, 1202
AluI AGCT 6 cut(s) 44, 246, 316, 1010, 1029, 1202
Alw26I GTCTC 5 cut(s) 133, 211, 427, 581, 1214
AlwI GGATC 7 cut(s) 76, 276, 289, 491, 929, 1071, 1125
Ama87I CYCGRG 1 cut(s) 430
Aor13HI TCCGGA 2 cut(s) 186, 1204
AoxI GGCC 4 cut(s) 417, 655, 826, 947
ApeKI GCWGC 2 cut(s) 316, 363
ApoI RAATTY 1 cut(s) 164
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 1030
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 15, 740, 763
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 307
BalI TGGCCA 1 cut(s) 828
BamHI GGATCC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 1211
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 303, 350
BccI CCATC 1 cut(s) 725
BceAI ACGGC 1 cut(s) 432
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 5 cut(s) 133, 211, 427, 581, 1214
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 3 cut(s) 195, 549, 771
BfmI CTRYAG 2 cut(s) 335, 561
BisI GCNGC 3 cut(s) 317, 364, 658
BlsI GCNGC 3 cut(s) 318, 365, 659
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 307
BmeRI GACNNNNNGTC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 5 cut(s) 191, 283, 309, 891, 1213
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 266, 590, 954
BpmI CTGGAG 1 cut(s) 1271
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 2 cut(s) 631, 1083
BpuMI CCSGG 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 1066
BsaBI GATNNNNATC 2 cut(s) 280, 933
BsaHI GRCGYC 1 cut(s) 971
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 4 cut(s) 414, 658, 975, 1146
BsaWI WCCGGW 2 cut(s) 186, 1204
BsaXI ACNNNNNCTCC 4 cut(s) 586, 616, 791, 821
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 755
Bse118I RCCGGY 1 cut(s) 748
Bse1I ACTGG 3 cut(s) 143, 420, 514
Bse3DI GCAATG 2 cut(s) 352, 679
Bse8I GATNNNNATC 2 cut(s) 280, 933
BseAI TCCGGA 2 cut(s) 186, 1204
BseCI ATCGAT 1 cut(s) 1066
BseDI CCNNGG 4 cut(s) 414, 658, 975, 1146
BseGI GGATG 4 cut(s) 111, 549, 709, 745
BseJI GATNNNNATC 2 cut(s) 280, 933
BseLI CCNNNNNNNGG 2 cut(s) 138, 755
BseMI GCAATG 2 cut(s) 352, 679
BseMII CTCAG 2 cut(s) 256, 1209
BseNI ACTGG 3 cut(s) 143, 420, 514
BseRI GAGGAG 3 cut(s) 62, 347, 435
BseX3I CGGCCG 1 cut(s) 655
BseXI GCAGC 2 cut(s) 303, 350
BseYI CCCAGC 1 cut(s) 906
Bsh1236I CGCG 1 cut(s) 660
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 4 cut(s) 419, 657, 828, 949
BshNI GGYRCC 1 cut(s) 1211
BshVI ATCGAT 1 cut(s) 1066
BsiEI CGRYCG 1 cut(s) 658
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 5 cut(s) 187, 311, 749, 893, 1205
BslFI GGGAC 2 cut(s) 91, 293
BslI CCNNNNNNNGG 2 cut(s) 138, 755
BsmAI GTCTC 5 cut(s) 133, 211, 427, 581, 1214
BsmBI CGTCTC 2 cut(s) 133, 211
BsmFI GGGAC 2 cut(s) 91, 293
BsnI GGCC 4 cut(s) 419, 657, 828, 949
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 430
Bsp13I TCCGGA 2 cut(s) 186, 1204
Bsp143I GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
BspACI CCGC 9 cut(s) 91, 115, 210, 279, 296, 372, 658, 660, 1215
BspANI GGCC 4 cut(s) 419, 657, 828, 949
BspCNI CTCAG 2 cut(s) 255, 1210
BspDI ATCGAT 1 cut(s) 1066
BspEI TCCGGA 2 cut(s) 186, 1204
BspFNI CGCG 1 cut(s) 660
BspLI GGNNCC 5 cut(s) 191, 283, 309, 891, 1213
BspMAI CTGCAG 1 cut(s) 339
BspPI GGATC 7 cut(s) 76, 276, 289, 491, 929, 1071, 1125
BspT107I GGYRCC 1 cut(s) 1211
BspTNI GGTCTC 1 cut(s) 1214
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 352, 679
BsrFI RCCGGY 1 cut(s) 748
BsrI ACTGG 3 cut(s) 143, 420, 514
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 4 cut(s) 414, 658, 975, 1146
BssMI GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
BssNI GRCGYC 1 cut(s) 971
BssT1I CCWWGG 2 cut(s) 975, 1146
Bst4CI ACNGT 3 cut(s) 205, 719, 923
Bst6I CTCTTC 1 cut(s) 1098
BstACI GRCGYC 1 cut(s) 971
BstC8I GCNNGC 2 cut(s) 353, 1282
BstDEI CTNAG 4 cut(s) 242, 1166, 1198, 1218
BstDSI CCRYGG 2 cut(s) 414, 658
BstF5I GGATG 4 cut(s) 111, 549, 709, 745
BstFNI CGCG 1 cut(s) 660
BstKTI GATC 9 cut(s) 70, 84, 284, 499, 931, 937, 1066, 1120, 1232
BstMAI GTCTC 5 cut(s) 133, 211, 427, 581, 1214
BstMBI GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 335, 561
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 303, 350
BstX2I RGATCY 3 cut(s) 81, 281, 1117
BstYI RGATCY 3 cut(s) 81, 281, 1117
BstZI CGGCCG 1 cut(s) 655
Bsu15I ATCGAT 1 cut(s) 1066
BsuRI GGCC 4 cut(s) 419, 657, 828, 949
BsuTUI ATCGAT 1 cut(s) 1066
BtgI CCRYGG 2 cut(s) 414, 658
BtsCI GGATG 4 cut(s) 111, 549, 709, 745
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 136, 638
Cac8I GCNNGC 2 cut(s) 353, 1282
Cfr10I RCCGGY 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 307
Cfr42I CCGCGG 1 cut(s) 661
ClaI ATCGAT 1 cut(s) 1066
CseI GACGC 1 cut(s) 979
Csp6I GTAC 2 cut(s) 667, 1054
CviAII CATG 1 cut(s) 858
CviQI GTAC 2 cut(s) 667, 1054
DdeI CTNAG 4 cut(s) 242, 1166, 1198, 1218
DpnI GATC 9 cut(s) 69, 83, 283, 498, 930, 936, 1065, 1119, 1231
DpnII GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
DriI GACNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 3 cut(s) 417, 655, 826
EagI CGGCCG 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 1098
Eam1105I GACNNNNNGTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 1098
EciI GGCGGA 2 cut(s) 199, 387
EclXI CGGCCG 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 975, 1146
Eco147I AGGCCT 1 cut(s) 949
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 1 cut(s) 307
Eco52I CGGCCG 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 975, 1146
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 2 cut(s) 975, 1146
Esp3I CGTCTC 2 cut(s) 133, 211
FaeI CATG 1 cut(s) 861
FaqI GGGAC 2 cut(s) 91, 293
FatI CATG 1 cut(s) 857
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 2 cut(s) 451, 1266
Fnu4HI GCNGC 3 cut(s) 317, 364, 658
FokI GGATG 4 cut(s) 98, 556, 716, 752
Fsp4HI GCNGC 3 cut(s) 317, 364, 658
FspBI CTAG 3 cut(s) 195, 549, 771
GluI GCNGC 3 cut(s) 317, 364, 658
GsaI CCCAGC 1 cut(s) 910
GsuI CTGGAG 1 cut(s) 1271
HaeIII GGCC 4 cut(s) 419, 657, 828, 949
HapII CCGG 5 cut(s) 187, 311, 749, 893, 1205
HgaI GACGC 1 cut(s) 979
Hin1I GRCGYC 1 cut(s) 971
Hin1II CATG 1 cut(s) 861
HinfI GANTC 7 cut(s) 20, 302, 324, 331, 589, 613, 818
HpaII CCGG 5 cut(s) 187, 311, 749, 893, 1205
HphI GGTGA 3 cut(s) 15, 740, 763
Hpy166II GTNNAC 5 cut(s) 173, 622, 649, 667, 776
Hpy188I TCNGA 5 cut(s) 262, 586, 594, 739, 939
Hpy8I GTNNAC 5 cut(s) 173, 622, 649, 667, 776
Hpy99I CGWCG 4 cut(s) 68, 266, 269, 393
HpyAV CCTTC 2 cut(s) 223, 1202
HpyCH4III ACNGT 3 cut(s) 205, 719, 923
HpyCH4V TGCA 7 cut(s) 319, 337, 345, 581, 672, 835, 1005
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 4 cut(s) 242, 1166, 1198, 1218
Hsp92I GRCGYC 1 cut(s) 971
Hsp92II CATG 1 cut(s) 861
Kpn2I TCCGGA 2 cut(s) 186, 1204
KspI CCGCGG 1 cut(s) 661
Kzo9I GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
LmnI GCTCC 5 cut(s) 313, 360, 677, 889, 1207
Lsp1109I GCAGC 2 cut(s) 303, 350
LweI GCATC 3 cut(s) 266, 590, 954
MaeI CTAG 3 cut(s) 195, 549, 771
MaeIII GTNAC 2 cut(s) 719, 1193
MalI GATC 9 cut(s) 69, 83, 283, 498, 930, 936, 1065, 1119, 1231
MbiI CCGCTC 1 cut(s) 298
MboI GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
MboII GAAGA 4 cut(s) 208, 211, 389, 1115
MflI RGATCY 3 cut(s) 81, 281, 1117
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 7 cut(s) 164, 461, 638, 681, 840, 884, 1076
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 3 cut(s) 583, 622, 827
MmeI TCCRAC 2 cut(s) 285, 578
Mox20I TGGCCA 1 cut(s) 828
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 2 cut(s) 186, 1204
MroXI GAANNNNTTC 1 cut(s) 1030
MscI TGGCCA 1 cut(s) 828
MseI TTAA 4 cut(s) 785, 864, 957, 1235
MslI CAYNNNNRTG 2 cut(s) 702, 726
Msp20I TGGCCA 1 cut(s) 828
MspA1I CMGCKG 3 cut(s) 44, 660, 1217
MspI CCGG 5 cut(s) 187, 311, 749, 893, 1205
MspR9I CCNGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 660
MwoI GCNNNNNNNGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 311
NdeI CATATG 2 cut(s) 451, 1266
NdeII GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
NlaIII CATG 1 cut(s) 861
NlaIV GGNNCC 5 cut(s) 191, 283, 309, 891, 1213
NmuCI GTSAC 2 cut(s) 719, 1193
NsiI ATGCAT 1 cut(s) 583
OliI CACNNNNGTG 1 cut(s) 726
PaeR7I CTCGAG 1 cut(s) 430
PceI AGGCCT 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 1030
PfeI GAWTC 4 cut(s) 20, 302, 324, 331
PflMI CCANNNNNTGG 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 3 cut(s) 318, 365, 659
PleI GAGTC 3 cut(s) 583, 621, 826
PpsI GAGTC 3 cut(s) 583, 621, 826
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 1260
PspFI CCCAGC 1 cut(s) 906
PspN4I GGNNCC 5 cut(s) 191, 283, 309, 891, 1213
PspPI GGNCC 1 cut(s) 307
PstI CTGCAG 1 cut(s) 339
PsuI RGATCY 3 cut(s) 81, 281, 1117
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 2 cut(s) 668, 1055
RsaNI GTAC 2 cut(s) 667, 1054
RseI CAYNNNNRTG 2 cut(s) 702, 726
SacII CCGCGG 1 cut(s) 661
SaqAI TTAA 4 cut(s) 785, 864, 957, 1235
SatI GCNGC 3 cut(s) 317, 364, 658
Sau3AI GATC 9 cut(s) 67, 81, 281, 496, 928, 934, 1063, 1117, 1229
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 3 cut(s) 583, 622, 827
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 3 cut(s) 266, 590, 954
SfcI CTRYAG 2 cut(s) 335, 561
Sfr274I CTCGAG 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 661
SgrBI CCGCGG 1 cut(s) 661
SinI GGWCC 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 702, 726
SmlI CTYRAG 3 cut(s) 430, 610, 1098
SmoI CTYRAG 3 cut(s) 430, 610, 1098
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 7 cut(s) 164, 461, 638, 681, 840, 884, 1076
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 9 cut(s) 91, 115, 210, 279, 296, 372, 658, 660, 1215
SspMI CTAG 3 cut(s) 195, 549, 771
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 975, 1146
TaaI ACNGT 3 cut(s) 205, 719, 923
TaqI TCGA 6 cut(s) 274, 300, 431, 465, 553, 1066
TaqII GACCGA 1 cut(s) 295
TasI AATT 7 cut(s) 164, 461, 638, 681, 840, 884, 1076
TatI WGTACW 2 cut(s) 666, 1053
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 4 cut(s) 20, 302, 324, 331
Tru1I TTAA 4 cut(s) 785, 864, 957, 1235
Tru9I TTAA 4 cut(s) 785, 864, 957, 1235
TscAI CASTG 2 cut(s) 143, 638
TseFI GTSAC 2 cut(s) 719, 1193
TseI GCWGC 2 cut(s) 316, 363
Tsp45I GTSAC 2 cut(s) 719, 1193
TspDTI ATGAA 4 cut(s) 238, 509, 674, 756
TspGWI ACGGA 2 cut(s) 115, 158
TspRI CASTG 2 cut(s) 143, 638
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 307
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 1030
XspI CTAG 3 cut(s) 195, 549, 771
ZrmI AGTACT 1 cut(s) 1055
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.