Rh4DG060500

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000237
Physical Location & Seq
Forward (+)
9153223 .. 9160362
7140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG060500.1

Sequence Viewer

Length: 912 bp
ATGGCTGATATTCCTGATAAAGAACTCCATTGTTGCGCAAAAAGGACGAAGGTTACAGGCAGCGGGAACTACCTAAAATCCTGTAGTACAAGTAGTAGCACTACCAGCAGCAGTATCAGTTTAGCAGAAATCATAGCCAGCACGGAGGAACTCCTTATGGAAATCCTACTGCGCGTGCCAGCTCGAACTCTGGTCCGCTTCAAATGTGTTTCCAAGCATTGGCTCGCTCTTATATCTGACCCCAAATTCTGTCACTGCCACACCCTTCGGAACCAAAACTCTTCCATCTCCGCAGTCTTTGGTGACAGATCCGTAGACCTTTTTTCCATAATTTTTTCTCTTGATCATGATCGTAGGGGTAGTAACCATGGAAACCATAACCCCCGTCCATCACGCTGCAATCCTCTTAATTTTGTTCAAAACCAACATGATCCCATCGAGATTATCCACTCCTGCAATGGCCTCTTCTTGTGTCGTCCCATCAATGCTACAAGTACTAGTAGAACCCCATATTTTGTTCTTAATCCCACAACCAATCAGTTCTTGACGCTTACAATTCCCCCAGCTGCTGCTGCTACTTCTAATGGTCAACAGATACAAACCCATATTATTGGTTGTGCTGTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTCATATGCTTGCTAAGTTCCCCTGAAGAATCTAAGAGAATATTTTTGACAACTTATTATCAATTGAAACGGATGGACAACTATCAAAATGATTACGGGATGATTGCTATTCTTCTGGCCTTGGTGGTGGTCGGTTCGGTCCTTTTCCTGCCCCTGCTCATCGGTCCTCTGCAGCCCCCATCCTTCGCCGTTATGCTGATAATCCCAGTGGTTCTGGTGGCTGCGTTGAGCTTCCTCCACAAAGCCTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

303

Amino Acids

33.44

Weight (kDa)

8.97

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 49 - 84 1.1e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000237)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14315
fragaria_vesca FvH4_2g35920 FvH4_2g35930 FvH4_2g35940 FvH4_2g35950 FvH4_3g00321 FvH4_3g32490 FvH4_3g43790 FvH4_3g43790 FvH4_3g43790 FvH4_4g06360 FvH4_4g06370 FvH4_4g06370 FvH4_6g52062 FvH4_6g52062 FvH4_6g52080 FvH4_6g52610 FvH4_6g52830 FvH4_6g52861 FvH4_6g52861 FvH4_6g52862 FvH4_6g52871 FvH4_6g52880 FvH4_6g52931 FvH4_6g52941 FvH4_6g52942 FvH4_6g53001 FvH4_6g53021 FvH4_6g53072 FvH4_6g53610 FvH4_6g53620 FvH4_6g53620 FvH4_6g53651 FvH4_6g53660
malus_domestica MD13G1235400.v1.1 MD16G1240000.v1.1
prunus_persica Prupe.1G066400_v2.0.a1
pyrus_communis pycom13g20790 pycom16g20090
rosa_chinensis RchiOBHm_Chr2g0174451 RchiOBHm_Chr2g0174531 RchiOBHm_Chr2g0174701 RchiOBHm_Chr2g0174881 RchiOBHm_Chr2g0174951 RchiOBHm_Chr4g0396041 RchiOBHm_Chr4g0396501 RchiOBHm_Chr4g0398111 RchiOBHm_Chr5g0059531 RchiOBHm_Chr6g0264241
rosa_laevigata RLG00000009385 RLG00000009528 RLG00000009532 RLG00000009537 RLG00000009541 RLG00000009577 RLG00000022267 RLG00000022268 RLG00000022269 RLG00000022273 RLG00000022287 RLG00000022289 RLG00000032767 RLG00000035297
rosa_multiflora Rmu_co8114622.1_g000001 Rmu_co8160300.1_g000001 Rmu_co8411703.1_g000001 Rmu_sc0001217.1_g000015 Rmu_sc0001533.1_g000002 Rmu_sc0003649.1_g000012 Rmu_sc0003649.1_g000015 Rmu_sc0003649.1_g000017 Rmu_sc0003649.1_g000020 Rmu_sc0006325.1_g000006 Rmu_sc0009506.1_g000001 Rmu_sc0009766.1_g000006 Rmu_sc0015078.1_g000002 Rmu_sc0015594.1_g000006 Rmu_sc0015594.1_g000007
rosa_roxburghii Rroxscaffold_1G00021050 Rroxscaffold_2G00077800 Rroxscaffold_2G00077920 Rroxscaffold_2G00078070 Rroxscaffold_2G00078100 Rroxscaffold_2G00078130 Rroxscaffold_2G00078170 Rroxscaffold_3G00220050 Rroxscaffold_5G00340840 Rroxscaffold_5G00340850 Rroxscaffold_5G00341370 Rroxscaffold_5G00343010 Rroxscaffold_5G00381750
rosa_rugosa Rorug02G0577300 Rorug02G0577400 Rorug02G0577700 Rorug02G0577800 Rorug02G0579000 Rorug03G0352900 Rorug03G0352900 Rorug04G0006000 Rorug05G0323000
rosa_samantha Rh2AG658100 Rh2AG658400 Rh2AG658600 Rh2AG660200 Rh2AG663100 Rh2CG632100 Rh2CG632600 Rh2CG632700 Rh2CG634300 Rh2CG635600 Rh2DG682800 Rh2DG683300 Rh2DG686000 Rh3BG068500 Rh3CG066900 Rh4AG064800 Rh4AG065900 Rh4AG068900 Rh4AG083000 Rh4BG063600 Rh4BG063700 Rh4BG067000 Rh4BG080700 Rh4DG060400 Rh4DG060500 Rh4DG075600 Rh5CG423600
rosa_wichuraiana Rw2G053920 Rw2G053940 Rw2G053950 Rw2G054080 Rw2G054210 Rw4G000460 Rw4G005260 Rw4G005270 Rw4G005550 Rw4G006900 Rw5G036490 Rw5G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 219
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 174
AciI CCGC 3 cut(s) 63, 196, 291
AclWI GGATC 2 cut(s) 303, 425
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 2 cut(s) 88, 496
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 3 cut(s) 202, 419, 724
AhlI ACTAGT 1 cut(s) 497
AluBI AGCT 3 cut(s) 182, 566, 888
AluI AGCT 3 cut(s) 182, 566, 888
AlwI GGATC 2 cut(s) 303, 425
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 2 cut(s) 460, 774
ApeKI GCWGC 8 cut(s) 60, 108, 396, 566, 569, 572, 829, 878
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 2 cut(s) 38, 174
AspS9I GGNCC 3 cut(s) 193, 796, 821
AsuHPI GGTGA 2 cut(s) 314, 636
AvaII GGWCC 3 cut(s) 193, 796, 821
BbvI GCAGC 8 cut(s) 72, 120, 383, 553, 556, 559, 841, 865
BccI CCATC 6 cut(s) 293, 397, 443, 488, 724, 844
BceAI ACGGC 1 cut(s) 830
BclI TGATCA 1 cut(s) 343
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 2 cut(s) 82, 827
BisI GCNGC 8 cut(s) 61, 109, 397, 567, 570, 573, 830, 879
BlsI GCNGC 8 cut(s) 62, 110, 398, 568, 571, 574, 831, 880
BmcAI AGTACT 1 cut(s) 496
Bme18I GGWCC 3 cut(s) 193, 796, 821
BmgT120I GGNCC 3 cut(s) 193, 796, 821
BmiI GGNNCC 1 cut(s) 272
BmrI ACTGGG 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 857
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 367, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 863
Bse3DI GCAATG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 367, 777
BseGI GGATG 3 cut(s) 735, 762, 836
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 863
BseXI GCAGC 8 cut(s) 72, 120, 383, 553, 556, 559, 841, 865
BseYI CCCAGC 1 cut(s) 562
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 462, 776
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 462, 776
Bsp143I GATC 4 cut(s) 308, 343, 349, 430
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 3 cut(s) 63, 196, 291
BspANI GGCC 2 cut(s) 462, 776
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 831
BspPI GGATC 2 cut(s) 303, 425
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 1 cut(s) 863
BssECI CCNNGG 2 cut(s) 367, 777
BssMI GATC 4 cut(s) 308, 343, 349, 430
BssT1I CCWWGG 2 cut(s) 367, 777
Bst6I CTCTTC 2 cut(s) 286, 470
BstC8I GCNNGC 5 cut(s) 139, 176, 180, 225, 668
BstDEI CTNAG 2 cut(s) 671, 690
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 3 cut(s) 735, 762, 836
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 38, 174
BstKTI GATC 4 cut(s) 311, 346, 352, 433
BstMBI GATC 4 cut(s) 308, 343, 349, 430
BstMWI GCNNNNNNNGC 2 cut(s) 105, 572
BstSFI CTRYAG 2 cut(s) 82, 827
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 8 cut(s) 72, 120, 383, 553, 556, 559, 841, 865
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 2 cut(s) 462, 776
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 3 cut(s) 735, 762, 836
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 870
Cac8I GCNNGC 5 cut(s) 139, 176, 180, 225, 668
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 346
CfoI GCGC 2 cut(s) 38, 174
Cfr13I GGNCC 3 cut(s) 193, 796, 821
CseI GACGC 1 cut(s) 556
Csp6I GTAC 2 cut(s) 87, 495
CviAII CATG 3 cut(s) 347, 368, 428
CviQI GTAC 2 cut(s) 87, 495
DdeI CTNAG 2 cut(s) 671, 690
DpnI GATC 4 cut(s) 310, 345, 351, 432
DpnII GATC 4 cut(s) 308, 343, 349, 430
Eam1104I CTCTTC 2 cut(s) 286, 470
EarI CTCTTC 2 cut(s) 286, 470
Eco130I CCWWGG 2 cut(s) 367, 777
Eco47I GGWCC 3 cut(s) 193, 796, 821
Eco57I CTGAAG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 367, 777
ErhI CCWWGG 2 cut(s) 367, 777
FaeI CATG 3 cut(s) 350, 371, 431
FaqI GGGAC 1 cut(s) 462
FatI CATG 3 cut(s) 346, 367, 427
FauI CCCGC 1 cut(s) 56
FauNDI CATATG 1 cut(s) 662
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 8 cut(s) 61, 109, 397, 567, 570, 573, 830, 879
FokI GGATG 3 cut(s) 742, 769, 823
Fsp4HI GCNGC 8 cut(s) 61, 109, 397, 567, 570, 573, 830, 879
FspBI CTAG 1 cut(s) 498
FspI TGCGCA 1 cut(s) 37
GlaI GCGC 2 cut(s) 37, 173
GluI GCNGC 8 cut(s) 61, 109, 397, 567, 570, 573, 830, 879
GsaI CCCAGC 1 cut(s) 566
HaeIII GGCC 2 cut(s) 462, 776
HgaI GACGC 1 cut(s) 556
HhaI GCGC 2 cut(s) 38, 174
Hin1II CATG 3 cut(s) 350, 371, 431
Hin6I GCGC 2 cut(s) 36, 172
HinP1I GCGC 2 cut(s) 36, 172
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HinfI GANTC 1 cut(s) 686
HphI GGTGA 2 cut(s) 314, 636
Hpy166II GTNNAC 2 cut(s) 316, 590
Hpy188I TCNGA 2 cut(s) 238, 270
Hpy188III TCNNGA 5 cut(s) 14, 341, 347, 439, 544
Hpy8I GTNNAC 2 cut(s) 316, 590
HpyAV CCTTC 4 cut(s) 43, 275, 645, 850
HpyCH4V TGCA 3 cut(s) 399, 456, 829
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 572
HpyF3I CTNAG 2 cut(s) 671, 690
Hsp92II CATG 3 cut(s) 350, 371, 431
HspAI GCGC 2 cut(s) 36, 172
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 308, 343, 349, 430
Lsp1109I GCAGC 8 cut(s) 72, 120, 383, 553, 556, 559, 841, 865
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 4 cut(s) 52, 251, 302, 362
MalI GATC 4 cut(s) 310, 345, 351, 432
MboI GATC 4 cut(s) 308, 343, 349, 430
MboII GAAGA 4 cut(s) 273, 457, 695, 761
MfeI CAATTG 1 cut(s) 719
MflI RGATCY 1 cut(s) 308
MluCI AATT 5 cut(s) 245, 330, 409, 555, 719
MnlI CCTC 6 cut(s) 139, 414, 473, 657, 834, 902
MseI TTAA 2 cut(s) 408, 522
MspA1I CMGCKG 2 cut(s) 63, 566
MunI CAATTG 1 cut(s) 719
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 105, 572
NcoI CCATGG 1 cut(s) 367
NdeI CATATG 1 cut(s) 662
NdeII GATC 4 cut(s) 308, 343, 349, 430
NlaIII CATG 3 cut(s) 350, 371, 431
NlaIV GGNNCC 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 251, 302
NsbI TGCGCA 1 cut(s) 37
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 1 cut(s) 686
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 8 cut(s) 62, 110, 398, 568, 571, 574, 831, 880
PspFI CCCAGC 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 3 cut(s) 193, 796, 821
PstI CTGCAG 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 2 cut(s) 88, 496
RsaNI GTAC 2 cut(s) 87, 495
SaqAI TTAA 2 cut(s) 408, 522
SatI GCNGC 8 cut(s) 61, 109, 397, 567, 570, 573, 830, 879
Sau3AI GATC 4 cut(s) 308, 343, 349, 430
Sau96I GGNCC 3 cut(s) 193, 796, 821
ScaI AGTACT 1 cut(s) 496
SetI ASST 8 cut(s) 54, 75, 184, 321, 568, 649, 660, 890
SfcI CTRYAG 2 cut(s) 82, 827
SinI GGWCC 3 cut(s) 193, 796, 821
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 5 cut(s) 245, 330, 409, 555, 719
SsiI CCGC 3 cut(s) 63, 196, 291
SspI AATATT 1 cut(s) 699
SspMI CTAG 1 cut(s) 498
StyI CCWWGG 2 cut(s) 367, 777
TaqI TCGA 3 cut(s) 184, 438, 905
TaqII GACCGA 2 cut(s) 784, 809
TasI AATT 5 cut(s) 245, 330, 409, 555, 719
TatI WGTACW 2 cut(s) 86, 494
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 2 cut(s) 408, 522
Tru9I TTAA 2 cut(s) 408, 522
TscAI CASTG 2 cut(s) 260, 870
TseFI GTSAC 2 cut(s) 251, 302
TseI GCWGC 8 cut(s) 60, 108, 396, 566, 569, 572, 829, 878
Tsp45I GTSAC 2 cut(s) 251, 302
TspGWI ACGGA 3 cut(s) 158, 301, 742
TspRI CASTG 2 cut(s) 260, 870
Van91I CCANNNNNTGG 1 cut(s) 219
VpaK11BI GGWCC 3 cut(s) 193, 796, 821
XapI RAATTY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.