Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25972769 .. 25974931

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTACGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCGAAGCACATCTTGTACAAGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGGTTGAAAGATCATGCAAACAAACAAGTAACAGATTCGATGCTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCGACTACAAAAGAAGGATACTACTATAGGATTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCTGGTGGTACAAGTGTGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCAGAATGGTTCAAGAACCCCGATCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCGTATGAGGAATCCAAAGATGTGAAGACTGGAAGTCTTGAGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGTAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

6.32

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	2 - 104	2e-12	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	231, 424
AclWI	GGATC	2 cut(s)	5, 392
AfaI	GTAC	2 cut(s)	119, 334
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	175, 388
AhdI	GACNNNNNGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	159, 225, 362, 434
AluI	AGCT	4 cut(s)	159, 225, 362, 434
AlwI	GGATC	2 cut(s)	5, 392
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	5 cut(s)	308, 348, 413, 431, 434
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BbsI	GAAGAC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	295, 360, 400, 421, 443
BccI	CCATC	2 cut(s)	137, 409
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	2 cut(s)	27, 85
BfmI	CTRYAG	2 cut(s)	271, 525
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
BlsI	GCNGC	5 cut(s)	310, 350, 415, 433, 436
Bme1390I	CCNGG	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	198, 364
BpiI	GAAGAC	1 cut(s)	467
BplI	GAGNNNNNCTC	4 cut(s)	467, 499, 469, 501
BpuEI	CTTGAG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	295, 360, 400, 421, 443
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
BspANI	GGCC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	5, 392
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	469
BssMI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
BssNAI	GTATAC	1 cut(s)	425
Bst1107I	GTATAC	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	223, 346
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	7 cut(s)	13, 30, 40, 88, 181, 317, 400
BstMBI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	348, 431
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	271, 525
BstV1I	GCAGC	5 cut(s)	295, 360, 400, 421, 443
BstV2I	GAAGAC	1 cut(s)	467
BstZ17I	GTATAC	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	223, 346
CaiI	CAGNNNCTG	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	118, 333
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	3 cut(s)	182, 345, 428
CviJI	RGCY	7 cut(s)	34, 94, 159, 225, 362, 434, 524
CviKI_1	RGCY	7 cut(s)	34, 94, 159, 225, 362, 434, 524
CviQI	GTAC	2 cut(s)	118, 333
DpnI	GATC	7 cut(s)	12, 29, 39, 87, 180, 316, 399
DpnII	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
DriI	GACNNNNNGTC	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	185, 348, 431
FaiI	YATR	7 cut(s)	97, 183, 273, 346, 425, 429, 441
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 98, 130
FatI	CATG	3 cut(s)	181, 344, 427
FbaI	TGATCA	2 cut(s)	27, 85
FblI	GTMKAC	2 cut(s)	231, 424
Fnu4HI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
GluI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	185, 348, 431
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	3 cut(s)	203, 446, 482
Hpy166II	GTNNAC	2 cut(s)	232, 425
Hpy188I	TCNGA	2 cut(s)	90, 249
Hpy188III	TCNNGA	3 cut(s)	14, 388, 473
Hpy8I	GTNNAC	2 cut(s)	232, 425
HpyAV	CCTTC	2 cut(s)	121, 254
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	6 cut(s)	185, 348, 377, 416, 431, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	185, 348, 431
Ksp22I	TGATCA	2 cut(s)	27, 85
Kzo9I	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	16, 27, 48, 145, 249, 312, 339, 390, 450
Lsp1109I	GCAGC	5 cut(s)	295, 360, 400, 421, 443
LweI	GCATC	2 cut(s)	198, 364
MaeIII	GTNAC	3 cut(s)	152, 196, 479
MalI	GATC	7 cut(s)	12, 29, 39, 87, 180, 316, 399
MboI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
MboII	GAAGA	2 cut(s)	57, 472
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	1 cut(s)	436
MspA1I	CMGCKG	2 cut(s)	159, 434
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
NlaIII	CATG	3 cut(s)	185, 348, 431
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	2 cut(s)	348, 431
PaeI	GCATGC	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	203, 446
PkrI	GCNGC	5 cut(s)	310, 350, 415, 433, 436
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	159, 434
RsaI	GTAC	2 cut(s)	119, 334
RsaNI	GTAC	2 cut(s)	118, 333
SatI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
Sau3AI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	4 cut(s)	161, 227, 364, 436
SfaNI	GCATC	2 cut(s)	198, 364
SfcI	CTRYAG	2 cut(s)	271, 525
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	34
SspI	AATATT	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	206, 317
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	203, 446
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	5 cut(s)	308, 348, 413, 431, 434
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	230
XceI	RCATGY	2 cut(s)	348, 431
XmiI	GTMKAC	2 cut(s)	231, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.