Rmu_sc0006601.1_g000010

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006601.1
Physical Location & Seq
Forward (+)
41415 .. 42256
842 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atggcccatcaccaccacccctacgcctgttcttcgattaacaacaacccatttgctgcccagtttgtgcgctcttgcacaaattacagagcccgtgcttcttcgatcaatcgagttttatggacaccttctgggaggcgtcttatcacaggctctcaaaacggggagttcactctctggaatggtgagtcattcaaacatgaattgaggattcagggtcatgatcacgcaatcaggtccatggcgtggagttttgatgatcaagattggatctctggtgatgatgggggcacaatcaggtattggaagagtaacatgattaatgtgctagtcaatgaatctgctcaccatgaatcggttcgggacctgagcttctgtcggactaatttgaagttttgttcatgttccgatgatactacggttaaaatctgggattttgaacggtgccaacaggagaagacattgaccggccatggttggaatgtgacgagtgttgactggcaccccacaaactctctgatagcttcgggtgggtgggacagtgttgtcaaactgtgggatgctaggtcagggagagaactctgttctttttatgatcacaaaaattgggtgcattctgtcaagtggaaccgaaatggtaactggctgctgactgcttccaaggatcaagtcattaagctttacgacttgagggctatgaaggaacttagatctttccgcggccatcagaacaaagtgactgctctagcttggcatcctcttaccgaagattattttgtcagtgggagttga

Protein Analysis

263

Amino Acids

30.39

Weight (kDa)

8.46

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Gbeta PF25391 23 - 246 1.1e-21 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 25 - 113 1.1e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 26 - 195 7.4e-22 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 30 - 158 2.7e-18 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 30 - 104 9.5e-06 WDR3 second beta-propeller domain
Beta-prop_IFT140_1st PF23383 31 - 117 1.4e-09 IFT140 first beta-propeller
Beta-prop_WDR5 PF25175 32 - 105 5.1e-08 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 34 - 104 1.3e-08 THOC3 beta-propeller domain
Beta-prop_EIPR1 PF23609 35 - 186 5.1e-07 EIPR1 beta-propeller
WD40_Prp19 PF24814 36 - 251 3.8e-32 Prp19 WD40 domain
EIF3I PF24805 68 - 155 1.9e-08 EIF3I
WD40_MABP1-WDR62_2nd PF24782 77 - 246 1.9e-12 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 80 - 250 3e-15 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 98 - 230 3.6e-30 WDR5 beta-propeller domain
WDR55 PF24796 108 - 235 7.1e-16 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 111 - 254 8e-18 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 114 - 145 9e-06 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 115 - 182 1.7e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 115 - 187 1.6e-09 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 116 - 194 1.3e-17 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 118 - 194 6.2e-11 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 128 - 252 3.8e-20 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 131 - 218 8.6e-08 WDR90/POC16, second beta-propeller
Beta-prop_SCAP PF24017 133 - 230 2.9e-07 SCAP Beta-propeller
Beta-prop_WDR3_1st PF25173 149 - 263 1.8e-22 WDR3 first beta-propeller domain
WD40 PF00400 150 - 187 3.7e-11 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 153 - 236 3e-11 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 154 - 262 4.4e-11 WDR3 second beta-propeller domain
Beta-prop_EML PF23409 156 - 261 1.9e-08 Echinoderm microtubule-associated protein first beta-propeller
EIF3I PF24805 161 - 253 6.2e-10 EIF3I
WD40 PF00400 192 - 229 4.4e-08 WD domain, G-beta repeat
WD40_CDC20-Fz PF24807 195 - 262 8.4e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 197 - 263 3.7e-11 WDR5 beta-propeller domain
Beta-prop_DCAF4 PF23761 198 - 253 5.5e-06 DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3 PF25174 200 - 263 1.8e-14 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 204 - 256 5e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13480 AT5G13480 AT5G13480 AT5G13480
fragaria_vesca FvH4_4g16141 FvH4_5g25490 FvH4_5g25550 FvH4_6g22190 FvH4_6g23330 FvH4_7g02880
malus_domestica MD02G1288700.v1.1 MD07G1038200.v1.1
prunus_persica Prupe.2G034300_v2.0.a1
pyrus_communis pycom02g24420 pycom07g02650
rosa_chinensis RchiOBHm_Chr1g0323831 RchiOBHm_Chr3g0482821 RchiOBHm_Chr3g0482981 RchiOBHm_Chr3g0486211 RchiOBHm_Chr4g0404661 RchiOBHm_Chr5g0010661
rosa_laevigata RLG00000012304 RLG00000017204 RLG00000017697 RLG00000020158 RLG00000030265 RLG00000031770 RLG00000035414
rosa_multiflora Rmu_co8066382.1_g000001 Rmu_co8299121.1_g000001 Rmu_co8338957.1_g000001 Rmu_sc0001371.1_g000014 Rmu_sc0002634.1_g000006 Rmu_sc0004124.1_g000001 Rmu_sc0004540.1_g000008 Rmu_sc0006103.1_g000005 Rmu_sc0006571.1_g000003 Rmu_sc0006601.1_g000005 Rmu_sc0006601.1_g000008 Rmu_sc0006601.1_g000010 Rmu_sc0009883.1_g000005 Rmu_sc0011602.1_g000010 Rmu_sc0011602.1_g000011 Rmu_sc0012513.1_g000008 Rmu_sc0025336.1_g000001 Rmu_sc0026709.1_g000001 Rmu_ssc0000175.1_g000002 Rmu_ssc0000175.1_g000031
rosa_roxburghii Rroxscaffold_1G00027770 Rroxscaffold_1G00065710 Rroxscaffold_3G00243370 Rroxscaffold_3G00243410 Rroxscaffold_3G00243440 Rroxscaffold_3G00243490 Rroxscaffold_4G00326390 Rroxscaffold_6G00398770 Rroxscaffold_6G00398910 Rroxscaffold_6G00398940
rosa_rugosa Rorug01G0039800 Rorug01G0039900 Rorug03G0198000 Rorug03G0198100 Rorug03G0199200 Rorug04G0451600
rosa_samantha Rh1AG057200 Rh1BG048200 Rh1CG058500 Rh1DG062300 Rh1DG062400 Rh2AG304100 Rh2CG002400 Rh2CG642500 Rh2DG328100 Rh3AG250000 Rh3BG285200 Rh3BG286000 Rh3CG284000 Rh3CG285400 Rh3CG307500 Rh3DG278700 Rh3DG279600 Rh3DG281000 Rh3DG303900 Rh4AG124300 Rh4BG118400 Rh4CG132400 Rh4CG132500 Rh4DG015900 Rh5AG083200 Rh5AG417500 Rh5AG538800 Rh5BG078500 Rh5BG447700 Rh5BG541600 Rh5BG541700 Rh5CG091200 Rh5CG564200 Rh5CG564300 Rh5DG078600 Rh5DG545800
rosa_wichuraiana Rw0G000660 Rw0G022360 Rw1G004890 Rw3G022520 Rw3G022590 Rw3G022710 Rw3G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
AccB1I GGYRCC 2 cut(s) 444, 501
AccB7I CCANNNNNTGG 1 cut(s) 246
AccII CGCG 1 cut(s) 720
AciI CCGC 2 cut(s) 718, 720
AclWI GGATC 2 cut(s) 278, 672
AcoI YGGCCR 2 cut(s) 469, 721
AcyI GRCGYC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 246, 355
AgsI TTSAA 3 cut(s) 196, 391, 440
AluBI AGCT 4 cut(s) 372, 524, 679, 749
AluI AGCT 4 cut(s) 372, 524, 679, 749
AlwI GGATC 2 cut(s) 278, 672
AoxI GGCC 3 cut(s) 3, 469, 721
ApeKI GCWGC 2 cut(s) 56, 646
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 4, 237, 364
AsuHPI GGTGA 3 cut(s) 197, 290, 338
AvaII GGWCC 2 cut(s) 237, 364
BaeGI GKGCMC 1 cut(s) 293
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BanI GGYRCC 2 cut(s) 444, 501
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 464
BbvI GCAGC 2 cut(s) 43, 633
BccI CCATC 3 cut(s) 15, 278, 732
BclI TGATCA 3 cut(s) 223, 259, 595
BfaI CTAG 3 cut(s) 329, 564, 746
BglII AGATCT 1 cut(s) 710
BisI GCNGC 3 cut(s) 57, 647, 721
BlsI GCNGC 3 cut(s) 58, 648, 722
Bme18I GGWCC 2 cut(s) 237, 364
BmgT120I GGNCC 3 cut(s) 4, 237, 364
BmiI GGNNCC 4 cut(s) 365, 446, 503, 629
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 2 cut(s) 550, 763
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 709
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 4 cut(s) 240, 472, 660, 718
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 355
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 3 cut(s) 61, 503, 647
BseDI CCNNGG 4 cut(s) 240, 472, 660, 718
BseGI GGATG 2 cut(s) 565, 754
BseLI CCNNNNNNNGG 2 cut(s) 246, 355
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 3 cut(s) 61, 503, 647
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 2 cut(s) 43, 633
Bsh1236I CGCG 1 cut(s) 720
BshFI GGCC 3 cut(s) 5, 471, 723
BshNI GGYRCC 2 cut(s) 444, 501
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 377, 551
BslI CCNNNNNNNGG 2 cut(s) 246, 355
BsmFI GGGAC 2 cut(s) 377, 551
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 3 cut(s) 5, 471, 723
Bsp1286I GDGCHC 2 cut(s) 94, 293
Bsp143I GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
Bsp19I CCATGG 2 cut(s) 240, 472
BspACI CCGC 2 cut(s) 718, 720
BspANI GGCC 3 cut(s) 5, 471, 723
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 1 cut(s) 720
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 4 cut(s) 365, 446, 503, 629
BspPI GGATC 2 cut(s) 278, 672
BspT107I GGYRCC 2 cut(s) 444, 501
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 3 cut(s) 61, 503, 647
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 4 cut(s) 240, 472, 660, 718
BssMI GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 3 cut(s) 240, 472, 660
Bst4CI ACNGT 4 cut(s) 421, 444, 542, 555
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 368, 707
BstDSI CCRYGG 3 cut(s) 240, 472, 718
BstF5I GGATG 2 cut(s) 565, 754
BstFNI CGCG 1 cut(s) 720
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 7 cut(s) 108, 226, 262, 273, 598, 667, 713
BstMBI GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 43, 633
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 2 cut(s) 270, 710
BstYI RGATCY 2 cut(s) 270, 710
BsuRI GGCC 3 cut(s) 5, 471, 723
BtgI CCRYGG 3 cut(s) 240, 472, 718
BtsCI GGATG 2 cut(s) 565, 754
BtsIMutI CAGTG 2 cut(s) 547, 787
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 3 cut(s) 4, 237, 364
Cfr42I CCGCGG 1 cut(s) 721
CseI GACGC 1 cut(s) 128
CviAII CATG 7 cut(s) 200, 221, 241, 316, 350, 402, 473
DdeI CTNAG 2 cut(s) 368, 707
DpnI GATC 7 cut(s) 107, 225, 261, 272, 597, 666, 712
DpnII GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
EaeI YGGCCR 2 cut(s) 469, 721
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 3 cut(s) 240, 472, 660
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 237, 364
EcoO109I RGGNCCY 1 cut(s) 364
EcoT14I CCWWGG 3 cut(s) 240, 472, 660
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 3 cut(s) 240, 472, 660
FaeI CATG 7 cut(s) 203, 224, 244, 319, 353, 405, 476
FaqI GGGAC 2 cut(s) 377, 551
FatI CATG 7 cut(s) 199, 220, 240, 315, 349, 401, 472
FbaI TGATCA 3 cut(s) 223, 259, 595
Fnu4HI GCNGC 3 cut(s) 57, 647, 721
FokI GGATG 2 cut(s) 572, 741
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 57, 647, 721
FspBI CTAG 3 cut(s) 329, 564, 746
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 57, 647, 721
HaeIII GGCC 3 cut(s) 5, 471, 723
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 7 cut(s) 203, 224, 244, 319, 353, 405, 476
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 4 cut(s) 188, 211, 338, 353
HpaII CCGG 1 cut(s) 468
HphI GGTGA 3 cut(s) 197, 290, 338
Hpy166II GTNNAC 2 cut(s) 171, 496
Hpy188I TCNGA 4 cut(s) 381, 409, 519, 729
Hpy188III TCNNGA 4 cut(s) 178, 221, 263, 362
Hpy8I GTNNAC 2 cut(s) 171, 496
HpyAV CCTTC 2 cut(s) 138, 694
HpyCH4III ACNGT 4 cut(s) 421, 444, 542, 555
HpyCH4V TGCA 2 cut(s) 78, 613
HpyF3I CTNAG 2 cut(s) 368, 707
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 7 cut(s) 203, 224, 244, 319, 353, 405, 476
HspAI GCGC 1 cut(s) 70
Ksp22I TGATCA 3 cut(s) 223, 259, 595
KspI CCGCGG 1 cut(s) 721
Kzo9I GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
Lsp1109I GCAGC 2 cut(s) 43, 633
LweI GCATC 2 cut(s) 550, 763
MaeI CTAG 3 cut(s) 329, 564, 746
MaeIII GTNAC 4 cut(s) 311, 484, 638, 736
MalI GATC 7 cut(s) 107, 225, 261, 272, 597, 666, 712
MboI GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
MboII GAAGA 5 cut(s) 24, 93, 319, 469, 779
MflI RGATCY 2 cut(s) 270, 710
MhlI GDGCHC 2 cut(s) 94, 293
MluCI AATT 4 cut(s) 82, 203, 385, 604
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 359, 458
MnlI CCTC 4 cut(s) 129, 201, 684, 768
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 4 cut(s) 39, 321, 423, 675
MspA1I CMGCKG 1 cut(s) 720
MspI CCGG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 613
MvnI CGCG 1 cut(s) 720
NcoI CCATGG 2 cut(s) 240, 472
NdeII GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
NlaIII CATG 7 cut(s) 203, 224, 244, 319, 353, 405, 476
NlaIV GGNNCC 4 cut(s) 365, 446, 503, 629
NmuCI GTSAC 2 cut(s) 484, 736
PagI TCATGA 1 cut(s) 220
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 3 cut(s) 211, 338, 353
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 3 cut(s) 58, 648, 722
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 364
PshBI ATTAAT 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 365, 446, 503, 629
PspPI GGNCC 3 cut(s) 4, 237, 364
PspPPI RGGWCCY 1 cut(s) 364
PsuI RGATCY 2 cut(s) 270, 710
SacII CCGCGG 1 cut(s) 721
SaqAI TTAA 4 cut(s) 39, 321, 423, 675
SatI GCNGC 3 cut(s) 57, 647, 721
Sau3AI GATC 7 cut(s) 105, 223, 259, 270, 595, 664, 710
Sau96I GGNCC 3 cut(s) 4, 237, 364
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 2 cut(s) 94, 293
SetI ASST 9 cut(s) 130, 239, 302, 369, 374, 526, 569, 681, 751
SfaNI GCATC 2 cut(s) 550, 763
Sfr303I CCGCGG 1 cut(s) 721
SgrBI CCGCGG 1 cut(s) 721
SinI GGWCC 2 cut(s) 237, 364
SmlI CTYRAG 1 cut(s) 688
SmoI CTYRAG 1 cut(s) 688
Sse9I AATT 4 cut(s) 82, 203, 385, 604
SsiI CCGC 2 cut(s) 718, 720
SspMI CTAG 3 cut(s) 329, 564, 746
StyI CCWWGG 3 cut(s) 240, 472, 660
TaaI ACNGT 4 cut(s) 421, 444, 542, 555
TaqI TCGA 3 cut(s) 35, 104, 112
TasI AATT 4 cut(s) 82, 203, 385, 604
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 3 cut(s) 211, 338, 353
Tru1I TTAA 4 cut(s) 39, 321, 423, 675
Tru9I TTAA 4 cut(s) 39, 321, 423, 675
TscAI CASTG 2 cut(s) 547, 787
TseFI GTSAC 2 cut(s) 484, 736
TseI GCWGC 2 cut(s) 56, 646
Tsp45I GTSAC 2 cut(s) 484, 736
TspDTI ATGAA 5 cut(s) 216, 351, 366, 390, 713
TspRI CASTG 2 cut(s) 547, 787
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 237, 364
VspI ATTAAT 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 3 cut(s) 329, 564, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.