AT1G44080

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000246
Physical Location & Seq
Reverse (-)
16753944 .. 16755670
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44080.1

Sequence Viewer

Length: 1044 bp
ATGGGTAAAGTTGGGTGGTCTGATTTACATGAAGATCTCATAGATTTGTTAGCCAATAATTTATCTTCCAACATCAATCTCCTCCGTTTCCGTAGCATCTGTAAACCCTGGCGTTCCACGGTTGCGACCAAGAAGCGTCTCCATAACCACTTTGAACGTAACCTTCCTACTTTCAAGAAGAAAAAGACTGTTGTCTCTCCCTCCACTTTCTTCCGTGTAACTCTCCCTTCTCCATGTCGTAACAAAGGATGGCTGATTAAAAACAGACAAGTCTCTGAATCTAGTAAAAATAATCTCTTGTCTCCTCTTTCTGGCAAAACCATAACCCCTTCCGACAAAACCCTAGACCTTTTGAAGGTCGAGTGTTTCAGAGATTCGTCAATCTTACAACTATTCGCGGATTCGGATAGAGTTGTTTTCCTAGACAATGTCTTTTTCGTAGTTGACTTCAAAAACGAAATTTGGTGTTGCAAGAGTGGAGAAGAAACTAGACATTGGACAAGAATCAACAATGAAGAAGCTAAAGGTTTTTTGGATATTATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAGCAATTTGGTGGATTAGTTTATCTGAACTCAGCATATATCAATACGGACCTTCAACTCCAGTGGACTTCTACGAAATTGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGAGAACTATGCGTTGTTCATCGATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTACCGAGAGAACCGTTTGTTTTAAGGTTTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGTCAGTTCCTTGGGAGACAAGGCACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGCCTCCGAGTACTATGGATGTTTGGAGAATGCTATTTACTTCAACGACCGGGAAGATGTTAGTGTGTTTAAGCTTGATGATTGTAGCATTATTACCAAGCAAATTAATTCTTCTTCTTCATCTTCTCATCAAAGTTGTTTCCAGATGTTTTCTACTTCTTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

347

Amino Acids

40.11

Weight (kDa)

8.55

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 80 - 316 6e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
AccII CGCG 1 cut(s) 398
AciI CCGC 1 cut(s) 398
AcsI RAATTY 3 cut(s) 459, 731, 796
AfaI GTAC 1 cut(s) 887
AfiI CCNNNNNNNGG 2 cut(s) 311, 355
AgsI TTSAA 6 cut(s) 155, 175, 355, 451, 636, 919
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 2 cut(s) 521, 949
AluI AGCT 2 cut(s) 521, 949
Alw26I GTCTC 6 cut(s) 143, 199, 277, 306, 673, 825
ApoI RAATTY 3 cut(s) 459, 731, 796
AseI ATTAAT 1 cut(s) 981
AspS9I GGNCC 1 cut(s) 629
AsuC2I CCSGG 1 cut(s) 926
AvaII GGWCC 1 cut(s) 629
BauI CACGAG 1 cut(s) 683
BccI CCATC 2 cut(s) 243, 781
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 6 cut(s) 143, 199, 277, 306, 673, 825
BfaI CTAG 4 cut(s) 282, 344, 422, 489
BglII AGATCT 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 887
Bme1390I CCNGG 2 cut(s) 109, 926
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 629
BmrFI CCNGG 2 cut(s) 109, 926
BmsI GCATC 1 cut(s) 105
BoxI GACNNNNGTC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 718
BsaJI CCNNGG 3 cut(s) 107, 117, 825
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 355
Bse1I ACTGG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 718
BseDI CCNNGG 3 cut(s) 107, 117, 825
BseGI GGATG 2 cut(s) 254, 899
BseLI CCNNNNNNNGG 2 cut(s) 311, 355
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 71, 294
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 925
BshVI ATCGAT 1 cut(s) 718
BsiEI CGRYCG 1 cut(s) 925
BsiSI CCGG 1 cut(s) 925
BslI CCNNNNNNNGG 2 cut(s) 311, 355
BsmAI GTCTC 6 cut(s) 143, 199, 277, 306, 673, 825
BsmBI CGTCTC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 910
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 624
BspDI ATCGAT 1 cut(s) 718
BspFNI CGCG 1 cut(s) 398
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 3 cut(s) 107, 117, 825
BssMI GATC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 683
BssT1I CCWWGG 1 cut(s) 825
Bst2BI CACGAG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 121, 190, 766
BstDEI CTNAG 2 cut(s) 611, 874
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 254, 899
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 6 cut(s) 143, 199, 277, 306, 673, 825
BstMBI GATC 1 cut(s) 34
BstMCI CGRYCG 1 cut(s) 925
BstNI CCWGG 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 107, 924
BstUI CGCG 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 718
BsuTUI ATCGAT 1 cut(s) 718
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 254, 899
BtsIMutI CAGTG 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 629
ClaI ATCGAT 1 cut(s) 718
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 886
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviAII CATG 2 cut(s) 29, 234
CviJI RGCY 5 cut(s) 53, 253, 521, 878, 949
CviKI_1 RGCY 5 cut(s) 53, 253, 521, 878, 949
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 2 cut(s) 611, 874
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 825
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 2 cut(s) 32, 237
FatI CATG 2 cut(s) 28, 233
FokI GGATG 2 cut(s) 261, 906
FspBI CTAG 4 cut(s) 282, 344, 422, 489
GsuI CTGGAG 1 cut(s) 624
HapII CCGG 1 cut(s) 925
HgaI GACGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 32, 237
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 6 cut(s) 278, 374, 401, 504, 681, 720
HpaII CCGG 1 cut(s) 925
Hpy166II GTNNAC 3 cut(s) 104, 445, 646
Hpy188I TCNGA 8 cut(s) 22, 277, 334, 371, 406, 607, 883, 1043
Hpy188III TCNNGA 2 cut(s) 175, 1018
Hpy8I GTNNAC 3 cut(s) 104, 445, 646
Hpy99I CGWCG 1 cut(s) 856
HpyAV CCTTC 5 cut(s) 173, 237, 339, 349, 642
HpyCH4III ACNGT 3 cut(s) 121, 190, 766
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 3 cut(s) 471, 566, 669
HpyF3I CTNAG 2 cut(s) 611, 874
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 32, 237
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 581
LpnPI CCDG 7 cut(s) 94, 121, 297, 564, 654, 938, 1031
LweI GCATC 1 cut(s) 105
MaeI CTAG 4 cut(s) 282, 344, 422, 489
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 3 cut(s) 158, 217, 239
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MfeI CAATTG 1 cut(s) 859
MflI RGATCY 1 cut(s) 34
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 2 cut(s) 93, 357
MnlI CCTC 5 cut(s) 92, 211, 315, 808, 889
Mph1103I ATGCAT 1 cut(s) 568
MseI TTAA 5 cut(s) 258, 575, 774, 945, 981
MspI CCGG 1 cut(s) 925
MspR9I CCNGG 2 cut(s) 109, 926
MunI CAATTG 1 cut(s) 859
Mva1269I GAATGC 1 cut(s) 910
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 398
NciI CCSGG 1 cut(s) 926
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 32, 237
NsiI ATGCAT 1 cut(s) 568
PctI GAATGC 1 cut(s) 910
PfeI GAWTC 5 cut(s) 278, 374, 401, 504, 720
PflFI GACNNNGTC 1 cut(s) 428
PleI GAGTC 1 cut(s) 675
PpsI GAGTC 1 cut(s) 675
PshAI GACNNNNGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 981
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspPI GGNCC 1 cut(s) 629
PsrI GAACNNNNNNTAC 2 cut(s) 732, 764
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 428
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
SaqAI TTAA 5 cut(s) 258, 575, 774, 945, 981
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 629
ScaI AGTACT 1 cut(s) 887
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 2 cut(s) 109, 926
SfaNI GCATC 1 cut(s) 105
SinI GGWCC 1 cut(s) 629
SsiI CCGC 1 cut(s) 398
SspMI CTAG 4 cut(s) 282, 344, 422, 489
StyD4I CCNGG 2 cut(s) 107, 924
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 3 cut(s) 121, 190, 766
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 360, 718
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 5 cut(s) 278, 374, 401, 504, 720
Tru1I TTAA 5 cut(s) 258, 575, 774, 945, 981
Tru9I TTAA 5 cut(s) 258, 575, 774, 945, 981
TscAI CASTG 1 cut(s) 648
TspDTI ATGAA 4 cut(s) 45, 528, 704, 984
TspGWI ACGGA 5 cut(s) 74, 80, 203, 642, 869
TspRI CASTG 1 cut(s) 648
Tth111I GACNNNGTC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 629
VspI ATTAAT 1 cut(s) 981
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 3 cut(s) 459, 731, 796
XspI CTAG 4 cut(s) 282, 344, 422, 489
ZrmI AGTACT 1 cut(s) 887
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.