Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

10249277 .. 10251150

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG120200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTGTTTACTGGATCTGGTGACTGATTCACTGGTCAGGTATGAGTTCAATCTATTGGACTTTCGGCTTGTGGAGTTGCGAAAGTCATATGTTCTTAAAGATACCGAGTATGTCTGTTTTCCTGTTGATTCCGTACAAAAAGTGGTGGTTATGACTGATGAGCATTTGGACATTGATAATGTGTATGCGGTATTTATGATTTTTAAGAGAGGGAATCTGGGTTTTGTGAGGGTTGGGGATGAGAACTTGATCAATGTCGATGAACAAAACTCGGATTATCGTGATATCATCATTTACAAGGGTCAATGCTATGTTGTTGATTATTGGGGGATAATTTCATGGGTCAATTCAGCTTTGGAGTACGGTGCAACGTTGACTTGCCAGGGCAATAGGAGAGTTAGGTACTCACACCAAGAGGATGAATATCCTGAAGCAATTGGTTTTAAAGTTTATAAGCTGGATCAAGAATGGGGTAATTATAAATGGGTCAATGTGAAAGACTTGGGAGATCGAGTGTTTATGTTAAGCAATGATGGGTCTTTCTCTGTCTCCACCAGAGAGTTTGCTGGAGTGAAAGGAAATTGCATTTTCTTCATTGCACAAGCATCAGCAAGGTGTTACAGTTGTGTGTTCAGTTTGGAGGATGGTAGGATTAGGAACCTAGCATCTTCGGAGTGTTCTCAGATGGTCCAGCCACCTTCAAATTTGCTCAACCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

240

Amino Acids

27.67

Weight (kDa)

4.81

Isoelectric Point (pI)

17.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	43 - 200	7.3e-24	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	453, 480
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	2 cut(s)	21, 468
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	3 cut(s)	135, 362, 404
AgsI	TTSAA	2 cut(s)	49, 702
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	353, 457
AluI	AGCT	2 cut(s)	353, 457
Alw26I	GTCTC	1 cut(s)	553
AlwI	GGATC	2 cut(s)	21, 468
ApoI	RAATTY	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	688
BccI	CCATC	3 cut(s)	527, 638, 679
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	1 cut(s)	662
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	614, 674
BpmI	CTGGAG	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bse1I	ACTGG	2 cut(s)	15, 36
Bse3DI	GCAATG	2 cut(s)	535, 594
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	3 cut(s)	244, 424, 649
BseJI	GATNNNNATC	1 cut(s)	423
BseMI	GCAATG	2 cut(s)	535, 594
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	2 cut(s)	15, 36
BsmAI	GTCTC	1 cut(s)	553
Bsp143I	GATC	4 cut(s)	13, 249, 460, 508
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	659
BspPI	GGATC	2 cut(s)	21, 468
BsrDI	GCAATG	2 cut(s)	535, 594
BsrI	ACTGG	2 cut(s)	15, 36
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	4 cut(s)	13, 249, 460, 508
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	365, 623
BstDEI	CTNAG	1 cut(s)	681
BstF5I	GGATG	3 cut(s)	244, 424, 649
BstKTI	GATC	4 cut(s)	16, 252, 463, 511
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	4 cut(s)	13, 249, 460, 508
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	244, 424, 649
BtsIMutI	CAGTG	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	3 cut(s)	134, 361, 403
CviAII	CATG	1 cut(s)	339
CviJI	RGCY	4 cut(s)	67, 353, 457, 694
CviKI_1	RGCY	4 cut(s)	67, 353, 457, 694
CviQI	GTAC	3 cut(s)	134, 361, 403
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	4 cut(s)	15, 251, 462, 510
DpnII	GATC	4 cut(s)	13, 249, 460, 508
DraI	TTTAAA	1 cut(s)	445
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	1 cut(s)	342
FatI	CATG	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	249
FokI	GGATG	3 cut(s)	251, 431, 656
FspBI	CTAG	1 cut(s)	662
GsuI	CTGGAG	1 cut(s)	588
Hin1II	CATG	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	3 cut(s)	26, 128, 214
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	8, 375
Hpy188I	TCNGA	3 cut(s)	274, 673, 684
Hpy188III	TCNNGA	3 cut(s)	281, 428, 464
Hpy8I	GTNNAC	2 cut(s)	8, 375
HpyAV	CCTTC	1 cut(s)	708
HpyCH4III	ACNGT	2 cut(s)	365, 623
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	368, 585, 599
HpyF3I	CTNAG	1 cut(s)	681
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	13, 249, 460, 508
LweI	GCATC	2 cut(s)	614, 674
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	19, 617
MalI	GATC	4 cut(s)	15, 251, 462, 510
MboI	GATC	4 cut(s)	13, 249, 460, 508
MboII	GAAGA	2 cut(s)	583, 660
MfeI	CAATTG	2 cut(s)	435, 718
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	7 cut(s)	333, 346, 435, 475, 580, 703, 718
MnlI	CCTC	4 cut(s)	203, 222, 409, 634
MseI	TTAA	4 cut(s)	96, 204, 444, 524
MspR9I	CCNGG	1 cut(s)	383
MunI	CAATTG	2 cut(s)	435, 718
MvaI	CCWGG	1 cut(s)	383
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	13, 249, 460, 508
NlaIII	CATG	1 cut(s)	342
NlaIV	GGNNCC	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	26, 128, 214
PsiI	TTATAA	2 cut(s)	453, 480
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	3 cut(s)	135, 362, 404
RsaNI	GTAC	3 cut(s)	134, 361, 403
SaqAI	TTAA	4 cut(s)	96, 204, 444, 524
Sau3AI	GATC	4 cut(s)	13, 249, 460, 508
Sau96I	GGNCC	1 cut(s)	688
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	8 cut(s)	41, 355, 374, 404, 459, 617, 663, 700
SfaNI	GCATC	2 cut(s)	614, 674
SinI	GGWCC	1 cut(s)	688
Sse9I	AATT	7 cut(s)	333, 346, 435, 475, 580, 703, 718
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	365, 623
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	258, 511
TasI	AATT	7 cut(s)	333, 346, 435, 475, 580, 703, 718
TfiI	GAWTC	3 cut(s)	26, 128, 214
Tru1I	TTAA	4 cut(s)	96, 204, 444, 524
Tru9I	TTAA	4 cut(s)	96, 204, 444, 524
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	276, 327, 435, 583
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	703
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.