Rroxscaffold_2G00144320

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000246
Physical Location & Seq
Reverse (-)
82217314 .. 82218449
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144320.1

Sequence Viewer

Length: 1041 bp
ATGGCATTCCTCTCTCCCTCCTTCCGAGCGATTTTCCCCTCCTCCTTCCCCCTCAAGTTCTTCTCCCCCGGCGAAGACTCTCCCGGAAACCATGCTTCATTGTTCCAATCAATAATCTACCGCATGGAGTCATGCATTGACGAGGATAACGGTGGTTCTTCATCACCATCAAACCTTTGTTCGAAGCCATGGTTGGTGAAGTTTGAGGAGGACCCCAGTTCTGGTATAATGCGTTTACTAGATCCGGTGACTAGTTCGCCTCTCAGCAGATATTCTCCCAATACTTCTTTAGAGGAATTAAACTTATTGGAGTATCGGATTGTAGAGCTACACAAGTCGTATTTACTTAAATTTGGCGAGAACAATGTTACTATTAATTCTGTGCACAAATTGGTAGTCCTCCCTCGTAACAATTTGGATTTTGGTGATGTGTGTGCGGTTTTTATGATTTATAATGAAGGCAAGCCGGGTTTTATGAGATTTCGAGATGAGGAGTTGACCCATGTGGATGAGGAAAACTCCTACTACGATGATATTACTGTGTACAAGGGTCAATGCTATGTGGTTGATAAGTGGGGAACGATTTCCTCTATCAATTCAGCTCTGGAGGTGATCCAGTTTTCGCCTCTATTGTCGTGCGGATTTGGTGATCATGAGCAGAAGCATTTGGTTGAGTCTTGTGGTGATCTTTATGTGGTCGATCAGTACTGTGAGAGGCTGGATCAAGAATGGAGTAAATGGGACAATGTGAAAAACTTGGGTGATCATGTGTTTCTTCTGAGCAAAGATGGGTCTTTCTCTGTCTCCACCAGAGAGTTTGATGGAGTGAAGGGAAATCGCATCTTCTTCATTGAACGAGTGTCGCCTACTGTAAGAGCAAGGTATCACAGTCGTGTGTTCGATTTAGAGGATGGTTCGATGAGGGACTTAGCATCTTTGCCGATTTCTCGGATGGTCCAGCCACCTTCAACTTGGCTCAGCCCTGATTTGAGTTCTTCTGCATCTGAATGTGAGTGTGAAATATTAATGCCAATTCAGTGA

Protein Analysis

346

Amino Acids

39.25

Weight (kDa)

4.81

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 61 - 293 9.7e-28 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AciI CCGC 3 cut(s) 121, 437, 639
AclWI GGATC 3 cut(s) 236, 607, 729
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 2 cut(s) 545, 707
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 854, 969
AhlI ACTAGT 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AleI CACNNNNGTG 1 cut(s) 891
AluBI AGCT 2 cut(s) 328, 602
AluI AGCT 2 cut(s) 328, 602
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 808
Alw44I GTGCAC 1 cut(s) 383
AlwI GGATC 3 cut(s) 236, 607, 729
ApaLI GTGCAC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AseI ATTAAT 2 cut(s) 375, 1025
Asp700I GAANNNNTTC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 211, 955
AsuC2I CCSGG 3 cut(s) 69, 84, 468
AsuHPI GGTGA 8 cut(s) 156, 208, 259, 437, 622, 659, 695, 773
AsuII TTCGAA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 211, 955
BaeGI GKGCMC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 387
BccI CCATC 5 cut(s) 175, 782, 815, 905, 946
BclI TGATCA 2 cut(s) 649, 763
BcnI CCSGG 3 cut(s) 69, 84, 468
BcoDI GTCTC 1 cut(s) 808
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 2 cut(s) 239, 252
BlpI GCTNAGC 1 cut(s) 977
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 3 cut(s) 69, 84, 468
Bme18I GGWCC 2 cut(s) 211, 955
BmgT120I GGNCC 2 cut(s) 211, 955
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 3 cut(s) 69, 84, 468
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 3 cut(s) 849, 941, 1010
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 626
Bpu1102I GCTNAGC 1 cut(s) 977
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 3 cut(s) 69, 84, 468
BsaJI CCNNGG 2 cut(s) 67, 188
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 216, 616
BseDI CCNNGG 2 cut(s) 67, 188
BseGI GGATG 3 cut(s) 514, 916, 957
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 277, 770, 991
BseNI ACTGG 2 cut(s) 216, 616
BseRI GAGGAG 3 cut(s) 31, 221, 506
BseSI GKGCMC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 4 cut(s) 69, 84, 245, 467
BslFI GGGAC 2 cut(s) 755, 938
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 808
BsmFI GGGAC 2 cut(s) 755, 938
BsmI GAATGC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
Bsp1720I GCTNAGC 1 cut(s) 977
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 3 cut(s) 121, 437, 639
BspCNI CTCAG 3 cut(s) 276, 771, 990
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 3 cut(s) 236, 607, 729
BspT104I TTCGAA 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 216, 616
BssECI CCNNGG 2 cut(s) 67, 188
BssMI GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 5 cut(s) 152, 541, 710, 871, 890
BstAUI TGTACA 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 4 cut(s) 263, 779, 928, 977
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 3 cut(s) 514, 916, 957
BstKTI GATC 7 cut(s) 244, 615, 652, 688, 703, 724, 766
BstMAI GTCTC 1 cut(s) 808
BstMBI GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
BstSCI CCNGG 3 cut(s) 67, 82, 466
BstSLI GKGCMC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 3 cut(s) 514, 916, 957
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 211, 955
Csp6I GTAC 2 cut(s) 544, 706
CviAII CATG 7 cut(s) 92, 124, 132, 189, 503, 653, 767
CviJI RGCY 8 cut(s) 187, 328, 466, 602, 718, 961, 976, 981
CviKI_1 RGCY 8 cut(s) 187, 328, 466, 602, 718, 961, 976, 981
CviQI GTAC 2 cut(s) 544, 706
DdeI CTNAG 4 cut(s) 263, 779, 928, 977
DpnI GATC 7 cut(s) 243, 614, 651, 687, 702, 723, 765
DpnII GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 211, 955
EcoO109I RGGNCCY 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 7 cut(s) 95, 127, 135, 192, 506, 656, 770
FaqI GGGAC 2 cut(s) 755, 938
FatI CATG 7 cut(s) 91, 123, 131, 188, 502, 652, 766
FbaI TGATCA 2 cut(s) 649, 763
FokI GGATG 3 cut(s) 521, 923, 964
FspBI CTAG 2 cut(s) 239, 252
GsuI CTGGAG 1 cut(s) 626
HapII CCGG 4 cut(s) 69, 84, 245, 467
Hin1II CATG 7 cut(s) 95, 127, 135, 192, 506, 656, 770
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 3 cut(s) 77, 128, 674
HpaII CCGG 4 cut(s) 69, 84, 245, 467
HphI GGTGA 8 cut(s) 156, 208, 259, 437, 622, 659, 695, 773
Hpy166II GTNNAC 4 cut(s) 236, 385, 498, 544
Hpy188I TCNGA 5 cut(s) 26, 318, 780, 951, 1006
Hpy188III TCNNGA 4 cut(s) 485, 605, 653, 725
Hpy8I GTNNAC 4 cut(s) 236, 385, 498, 544
HpyAV CCTTC 5 cut(s) 31, 55, 452, 823, 975
HpyCH4III ACNGT 5 cut(s) 152, 541, 710, 871, 890
HpyCH4V TGCA 3 cut(s) 135, 385, 1001
HpyF3I CTNAG 4 cut(s) 263, 779, 928, 977
Hsp92II CATG 7 cut(s) 95, 127, 135, 192, 506, 656, 770
Ksp22I TGATCA 2 cut(s) 649, 763
Kzo9I GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
LweI GCATC 3 cut(s) 849, 941, 1010
MaeI CTAG 2 cut(s) 239, 252
MaeIII GTNAC 3 cut(s) 247, 367, 407
MalI GATC 7 cut(s) 243, 614, 651, 687, 702, 723, 765
MboI GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
MboII GAAGA 7 cut(s) 52, 86, 150, 767, 835, 838, 987
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 7 cut(s) 296, 350, 376, 389, 412, 595, 1032
MlyI GAGTC 3 cut(s) 71, 137, 683
Mph1103I ATGCAT 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 583
MseI TTAA 4 cut(s) 299, 348, 375, 1025
MslI CAYNNNNRTG 3 cut(s) 507, 891, 1006
MspI CCGG 4 cut(s) 69, 84, 245, 467
MspR9I CCNGG 3 cut(s) 69, 84, 468
Mva1269I GAATGC 1 cut(s) 5
NciI CCSGG 3 cut(s) 69, 84, 468
NcoI CCATGG 1 cut(s) 188
NdeII GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
NlaIII CATG 7 cut(s) 95, 127, 135, 192, 506, 656, 770
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 137
NspV TTCGAA 1 cut(s) 182
OliI CACNNNNGTG 1 cut(s) 891
PagI TCATGA 1 cut(s) 652
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 82
PleI GAGTC 3 cut(s) 71, 136, 682
PpsI GAGTC 3 cut(s) 71, 136, 682
PpuMI RGGWCCY 1 cut(s) 211
PshBI ATTAAT 2 cut(s) 375, 1025
PsiI TTATAA 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 211, 955
PspPPI RGGWCCY 1 cut(s) 211
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 2 cut(s) 545, 707
RsaNI GTAC 2 cut(s) 544, 706
RseI CAYNNNNRTG 3 cut(s) 507, 891, 1006
SaqAI TTAA 4 cut(s) 299, 348, 375, 1025
Sau3AI GATC 7 cut(s) 241, 612, 649, 685, 700, 721, 763
Sau96I GGNCC 2 cut(s) 211, 955
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 3 cut(s) 71, 137, 683
ScrFI CCNGG 3 cut(s) 69, 84, 468
SduI GDGCHC 1 cut(s) 387
SetI ASST 6 cut(s) 177, 330, 604, 612, 884, 967
SfaNI GCATC 3 cut(s) 849, 941, 1010
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 2 cut(s) 211, 955
SmiMI CAYNNNNRTG 3 cut(s) 507, 891, 1006
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 7 cut(s) 296, 350, 376, 389, 412, 595, 1032
SsiI CCGC 3 cut(s) 121, 437, 639
SspI AATATT 1 cut(s) 1023
SspMI CTAG 2 cut(s) 239, 252
StyD4I CCNGG 3 cut(s) 67, 82, 466
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 5 cut(s) 152, 541, 710, 871, 890
TaqI TCGA 5 cut(s) 182, 484, 699, 900, 917
TasI AATT 7 cut(s) 296, 350, 376, 389, 412, 595, 1032
TatI WGTACW 2 cut(s) 543, 705
Tru1I TTAA 4 cut(s) 299, 348, 375, 1025
Tru9I TTAA 4 cut(s) 299, 348, 375, 1025
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 4 cut(s) 87, 150, 471, 838
VneI GTGCAC 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 211, 955
VspI ATTAAT 2 cut(s) 375, 1025
XapI RAATTY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 969
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 2 cut(s) 239, 252
ZrmI AGTACT 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.