Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

9246643 .. 9247606

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGTCATGCATTGACGAGGATAACTGCGGTTCTTCACCATCAAACCTTTGTTCGAAGCCATGGTTGGTGAAGTTTGAGGAGGACCCCAGTTCTGGTATAATGCGTTTACTAGATCCGGTGACTAGTTCGCCTCTCAGGTATTCTCCCAATACTTCTTTAAACTTATTGGAGTATCGGATCGATTGCAAGCTGGGTTTTATGAGATTTGGAGAGATGAGGAGTACGTTGACCCATGTGGATGAGGAAAACTCCTACTATGATGATATTATTGTGTACAATGGTCAATGCTATGTGGTTGATAAGTGGGGAACGATTTCCTCTATCAATTCAGCTCTGGAGGTGATCCAGTTTTCGCCTCTATTGTCGTGTGGATTTGGTGGGCAGAAGCATTTGGTTGAGTCTTGTGTTGATCTTTATGTGGTCGATCAGTACTATGAGAGGGTGAGTGTTCGTCACGGCAGGGAGGACGAGTACATTTTCGGGAATAAATGGGACAATGTGAAAAACTTGGGTGATCATGTGTTTCTTCTGAGCAAAGATGGGTCTTTCTCTGTCTCCACCAGAGAGTTTGATGGAGTCATGAAGGGAAATTGCATCTTCTTCATTGAACGAGTGTCGCCTACTAGGATGGTCGAGCCACCGTCAACTTGGCTCAGCCCTGATTTGAGTTCTTCTGCATCTGAATGTGTGTGTGAAATATTAATGCCAATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

239

Amino Acids

27.06

Weight (kDa)

4.61

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	51 - 204	5.2e-20	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	3 cut(s)	110, 188, 340
AfaI	GTAC	4 cut(s)	226, 278, 434, 476
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	611
AhlI	ACTAGT	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	2 cut(s)	193, 335
AluI	AGCT	2 cut(s)	193, 335
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	3 cut(s)	110, 188, 340
AseI	ATTAAT	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	6 cut(s)	30, 82, 133, 355, 457, 527
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	85
BccI	CCATC	4 cut(s)	49, 536, 569, 625
BceAI	ACGGC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	562
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	3 cut(s)	113, 126, 627
BlpI	GCTNAGC	1 cut(s)	656
BmcAI	AGTACT	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	606, 689
BmuI	ACTGGG	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	656
Bpu14I	TTCGAA	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	90, 349
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	2 cut(s)	247, 636
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	151, 524, 670
BseNI	ACTGG	2 cut(s)	90, 349
BseRI	GAGGAG	2 cut(s)	95, 235
BseYI	CCCAGC	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
Bsp1720I	GCTNAGC	1 cut(s)	656
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	3 cut(s)	150, 525, 669
BspDI	ATCGAT	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	3 cut(s)	110, 188, 340
BspT104I	TTCGAA	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	90, 349
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	645
BstAUI	TGTACA	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	137, 533, 656
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	247, 636
BstKTI	GATC	6 cut(s)	118, 183, 348, 415, 430, 520
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	247, 636
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	4 cut(s)	225, 277, 433, 475
CviAII	CATG	5 cut(s)	9, 63, 236, 521, 583
CviJI	RGCY	6 cut(s)	61, 193, 335, 640, 655, 660
CviKI_1	RGCY	6 cut(s)	61, 193, 335, 640, 655, 660
CviQI	GTAC	4 cut(s)	225, 277, 433, 475
DdeI	CTNAG	3 cut(s)	137, 533, 656
DpnI	GATC	6 cut(s)	117, 182, 347, 414, 429, 519
DpnII	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
DraI	TTTAAA	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	62
EcoT22I	ATGCAT	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	5 cut(s)	12, 66, 239, 524, 586
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	5 cut(s)	8, 62, 235, 520, 582
FbaI	TGATCA	1 cut(s)	517
FokI	GGATG	2 cut(s)	254, 643
FspBI	CTAG	3 cut(s)	113, 126, 627
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	359
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	5 cut(s)	12, 66, 239, 524, 586
HincII	GTYRAC	2 cut(s)	231, 648
HindII	GTYRAC	2 cut(s)	231, 648
HinfI	GANTC	3 cut(s)	5, 401, 579
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	6 cut(s)	30, 82, 133, 355, 457, 527
Hpy166II	GTNNAC	4 cut(s)	110, 231, 277, 648
Hpy188I	TCNGA	3 cut(s)	180, 534, 685
Hpy188III	TCNNGA	3 cut(s)	338, 484, 583
Hpy8I	GTNNAC	4 cut(s)	110, 231, 277, 648
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	12, 189, 597, 680
HpyF3I	CTNAG	3 cut(s)	137, 533, 656
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	12, 66, 239, 524, 586
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
LweI	GCATC	2 cut(s)	606, 689
MaeI	CTAG	3 cut(s)	113, 126, 627
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	2 cut(s)	121, 455
MalI	GATC	6 cut(s)	117, 182, 347, 414, 429, 519
MboI	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
MboII	GAAGA	5 cut(s)	27, 521, 592, 595, 666
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	3 cut(s)	328, 592, 711
MlyI	GAGTC	3 cut(s)	14, 410, 588
Mph1103I	ATGCAT	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	2 cut(s)	161, 704
MslI	CAYNNNNRTG	2 cut(s)	240, 685
MspI	CCGG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
NlaIII	CATG	5 cut(s)	12, 66, 239, 524, 586
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	121, 455
NsiI	ATGCAT	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	56
PagI	TCATGA	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	316
PleI	GAGTC	3 cut(s)	13, 409, 587
PpsI	GAGTC	3 cut(s)	13, 409, 587
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	4 cut(s)	226, 278, 434, 476
RsaNI	GTAC	4 cut(s)	225, 277, 433, 475
RseI	CAYNNNNRTG	2 cut(s)	240, 685
SaqAI	TTAA	2 cut(s)	161, 704
Sau3AI	GATC	6 cut(s)	115, 180, 345, 412, 427, 517
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	3 cut(s)	14, 410, 588
SetI	ASST	6 cut(s)	51, 143, 195, 230, 337, 345
SfaNI	GCATC	2 cut(s)	606, 689
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	240, 685
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	3 cut(s)	328, 592, 711
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	3 cut(s)	113, 126, 627
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	645
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	4 cut(s)	56, 183, 426, 636
TasI	AATT	3 cut(s)	328, 592, 711
TatI	WGTACW	3 cut(s)	276, 432, 474
Tru1I	TTAA	2 cut(s)	161, 704
Tru9I	TTAA	2 cut(s)	161, 704
TseFI	GTSAC	2 cut(s)	121, 455
Tsp45I	GTSAC	2 cut(s)	121, 455
TspDTI	ATGAA	2 cut(s)	595, 599
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	3 cut(s)	113, 126, 627
ZrmI	AGTACT	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.