Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

10170484 .. 10170843

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGATTTATAATGAAGGCAAGCTGGGTTTTATGAGATTTGGAGATGATAAGTTGACCCATGTGGATGAGGAAAACTCCTACTATGATGATATTATTGTGTACAAGGGTCAATGCTATGTGGTTGATAAGTGGGGAACGATTTCCTCTATCAATTCAGCTCTGGAGGTGATCCAGTTTTCGCCGCTATTGTCGTGTGGATTTGGTGGGCAGAAGCATTTGGTTGAGTCGTGTGGTGATCTTTATGTGGTCGATCAGTACTATGAGAGGGTGAGTGTTCGTCACGGCAGGGAGGACGAGTACATTTTCGGGAAGTATCACAATTCGCGCTATGATTCTGATGCAATCGATTTTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

119

Amino Acids

13.79

Weight (kDa)

4.81

Isoelectric Point (pI)

22.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 94	3e-11	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccII	CGCG	1 cut(s)	325
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	163
AfaI	GTAC	3 cut(s)	101, 257, 299
AluBI	AGCT	2 cut(s)	22, 158
AluI	AGCT	2 cut(s)	22, 158
AlwI	GGATC	1 cut(s)	163
Asp700I	GAANNNNTTC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	178, 245, 280
BceAI	ACGGC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	257
BmsI	GCATC	1 cut(s)	328
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse1I	ACTGG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	345
BseGI	GGATG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	168, 235, 250
BspACI	CCGC	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	168, 235, 250
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	171, 238, 253
BstMBI	GATC	3 cut(s)	168, 235, 250
BstUI	CGCG	1 cut(s)	325
Bsu15I	ATCGAT	1 cut(s)	345
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	100, 256, 298
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	2 cut(s)	22, 158
CviKI_1	RGCY	2 cut(s)	22, 158
CviQI	GTAC	3 cut(s)	100, 256, 298
DpnI	GATC	3 cut(s)	170, 237, 252
DpnII	GATC	3 cut(s)	168, 235, 250
DraI	TTTAAA	1 cut(s)	352
FaeI	CATG	1 cut(s)	62
FaiI	YATR	8 cut(s)	9, 32, 60, 84, 117, 243, 261, 330
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	182
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	182
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	224, 332
HphI	GGTGA	3 cut(s)	178, 245, 280
Hpy166II	GTNNAC	2 cut(s)	54, 100
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	161, 307
Hpy8I	GTNNAC	2 cut(s)	54, 100
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	168, 235, 250
LpnPI	CCDG	4 cut(s)	8, 146, 185, 271
LweI	GCATC	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	170, 237, 252
MboI	GATC	3 cut(s)	168, 235, 250
MluCI	AATT	2 cut(s)	151, 319
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	61, 154, 157, 258, 283
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	325
NdeII	GATC	3 cut(s)	168, 235, 250
NlaIII	CATG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	101, 257, 299
RsaNI	GTAC	3 cut(s)	100, 256, 298
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	3 cut(s)	168, 235, 250
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	233
SetI	ASST	3 cut(s)	24, 160, 168
SfaNI	GCATC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	151, 319
SsiI	CCGC	1 cut(s)	182
TaqI	TCGA	2 cut(s)	249, 345
TasI	AATT	2 cut(s)	151, 319
TatI	WGTACW	3 cut(s)	99, 255, 297
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	139
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.