Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

10810919 .. 10811389

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG121900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGTTTACTGGATCTGGTGACTGATTCACTGGTCAGGTATGAGTTCAATCTATTGGACTTTCGGCTTGTGGAGTTGCGAAAGTCATATGTTCTTAAAGATACCGAGTATGTCTGTTTTCCTGTTGATTCCGTACAAAAAGTGGTGGTTATGACTGATGAGCATTTGGACATTGATAATGTGTATGCGGTATTTATGATTTTTAAGAGAGGGAATCTGGGTTTTGTGAGGGTTGGGGATGAGAACTTGATCAATGTCGATGAACAAAACTCGGATTATCGTGATATCATCATTTACAAGGGTCAATGCTATGTTGTTGATTATTGGGGGATAATTTCATGGGTCAATTCAGCTTTGGAGGTGATTCAGTTTTCGCCTCCGATATGTGGGTCAGGAGGGCAGAAGCATTTGGTGGAATCATCTTTATGTGGTTGTTCAGTACGGTGCAACGTTGACTTGCCAGGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

156

Amino Acids

17.79

Weight (kDa)

4.54

Isoelectric Point (pI)

15.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	42 - 141	4.5e-10	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	135, 441
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
AlwI	GGATC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	31, 373
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	15, 36
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	15, 36
BslI	CCNNNNNNNGG	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	13, 249
BspACI	CCGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	15, 36
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	13, 249
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	16, 252
BstMBI	GATC	2 cut(s)	13, 249
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	134, 440
CviAII	CATG	1 cut(s)	339
CviJI	RGCY	2 cut(s)	67, 353
CviKI_1	RGCY	2 cut(s)	67, 353
CviQI	GTAC	2 cut(s)	134, 440
DpnI	GATC	2 cut(s)	15, 251
DpnII	GATC	2 cut(s)	13, 249
Eco32I	GATATC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	1 cut(s)	342
FatI	CATG	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	249
FokI	GGATG	1 cut(s)	251
Hin1II	CATG	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	5 cut(s)	26, 128, 214, 364, 416
HphI	GGTGA	2 cut(s)	31, 373
Hpy166II	GTNNAC	2 cut(s)	8, 454
Hpy188I	TCNGA	2 cut(s)	274, 381
Hpy188III	TCNNGA	2 cut(s)	281, 393
Hpy8I	GTNNAC	2 cut(s)	8, 454
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	13, 249
LpnPI	CCDG	7 cut(s)	2, 17, 22, 135, 203, 378, 447
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	15, 251
MboI	GATC	2 cut(s)	13, 249
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	2 cut(s)	333, 346
MnlI	CCTC	5 cut(s)	203, 222, 352, 387, 389
MseI	TTAA	2 cut(s)	96, 204
MslI	CAYNNNNRTG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	2 cut(s)	13, 249
NlaIII	CATG	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	5 cut(s)	26, 128, 214, 364, 416
Psp1406I	AACGTT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	135, 441
RsaNI	GTAC	2 cut(s)	134, 440
RseI	CAYNNNNRTG	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	96, 204
Sau3AI	GATC	2 cut(s)	13, 249
ScrFI	CCNGG	1 cut(s)	462
SetI	ASST	4 cut(s)	41, 355, 363, 453
SmiMI	CAYNNNNRTG	1 cut(s)	424
Sse9I	AATT	2 cut(s)	333, 346
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	333, 346
TfiI	GAWTC	5 cut(s)	26, 128, 214, 364, 416
Tru1I	TTAA	2 cut(s)	96, 204
Tru9I	TTAA	2 cut(s)	96, 204
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	276, 327
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.