Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039432.1

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 701

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039432.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 701 bp

cctacaccagaattgatgttacttatgtgaacagagtggtggttttgcctgctgatcatttgagtttgggggaggattttgtggtgtttatgatttatagaggagggcatttggctgttatgaggtatggggatgagggttggattcgtgtggacgaaaacaactctcattatgacgatctcattgtgtacaagggtcagtgctatgttgttgataaatggggcacgatatcgtggataagtcgggcgttgcaggtgattcagtactcgccgcccttgtgtgggtttggtgcacacaagcatttggttgagtgttgcggggatctttgtgtggtcgacaggtatcttggtaatgagcctcagaggacgtttaactacatacattgtgatggcgaggtggtggattttaaggtttatcggctcgatgaggaatgggcgacgtgggtcaatgtgacaaacttgggggatcaagtcattattttgagctatgatggagctttctcggtttcaaccagagactttcctggggtgaagggaaattgcattatgttcactgaacaagactttggtcctttaccagctgtaattggaatgcgatccagaagtcgtcaccgtcgtgtgtttgacttacaggatggtagcatgagcaagattggctattctcagttgttccggacaccctcaaattggctcactaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

232

Amino Acids

26.61

Weight (kDa)

5.61

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	2 cut(s)	271, 317
AclWI	GGATC	3 cut(s)	329, 473, 590
AfaI	GTAC	2 cut(s)	190, 265
AfiI	CCNNNNNNNGG	3 cut(s)	280, 281, 686
AgsI	TTSAA	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	3 cut(s)	485, 496, 580
AluI	AGCT	3 cut(s)	485, 496, 580
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	509
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	3 cut(s)	329, 473, 590
Aor13HI	TCCGGA	1 cut(s)	671
ApaLI	GTGCAC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	3 cut(s)	267, 540, 601
AvaII	GGWCC	1 cut(s)	568
BaeGI	GKGCMC	2 cut(s)	226, 294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	382, 484, 628
BciT130I	CCWGG	1 cut(s)	524
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	524
BoxI	GACNNNNGTC	2 cut(s)	442, 566
BsaJI	CCNNGG	1 cut(s)	523
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 281, 686
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	2 cut(s)	138, 639
BseLI	CCNNNNNNNGG	3 cut(s)	280, 281, 686
BseMII	CTCAG	2 cut(s)	373, 676
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	2 cut(s)	226, 294
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	3 cut(s)	280, 281, 686
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	596
Bsp1286I	GDGCHC	2 cut(s)	226, 294
Bsp13I	TCCGGA	1 cut(s)	671
Bsp1407I	TGTACA	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	54, 177, 321, 465, 595
BspACI	CCGC	2 cut(s)	271, 317
BspCNI	CTCAG	2 cut(s)	372, 675
BspEI	TCCGGA	1 cut(s)	671
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	329, 473, 590
BsrGI	TGTACA	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	5 cut(s)	54, 177, 321, 465, 595
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	613
BstAUI	TGTACA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	359, 662
BstF5I	GGATG	2 cut(s)	138, 639
BstKTI	GATC	5 cut(s)	57, 180, 324, 468, 598
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	5 cut(s)	54, 177, 321, 465, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	1 cut(s)	524
BstPAI	GACNNNNGTC	2 cut(s)	442, 566
BstSCI	CCNGG	1 cut(s)	522
BstSLI	GKGCMC	2 cut(s)	226, 294
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	138, 639
BtsIMutI	CAGTG	2 cut(s)	205, 551
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	189, 264
CviAII	CATG	1 cut(s)	642
CviJI	RGCY	8 cut(s)	115, 357, 420, 485, 496, 580, 656, 690
CviKI_1	RGCY	8 cut(s)	115, 357, 420, 485, 496, 580, 656, 690
CviQI	GTAC	2 cut(s)	189, 264
DdeI	CTNAG	2 cut(s)	359, 662
DpnI	GATC	5 cut(s)	56, 179, 323, 467, 597
DpnII	GATC	5 cut(s)	54, 177, 321, 465, 595
Eco32I	GATATC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	230
FaeI	CATG	1 cut(s)	645
FatI	CATG	1 cut(s)	641
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	145, 646
Fsp4HI	GCNGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	271
HapII	CCGG	1 cut(s)	672
Hin1II	CATG	1 cut(s)	645
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	2 cut(s)	144, 258
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	3 cut(s)	267, 540, 601
Hpy166II	GTNNAC	6 cut(s)	30, 153, 189, 292, 336, 551
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	599, 672
Hpy8I	GTNNAC	6 cut(s)	30, 153, 189, 292, 336, 551
Hpy99I	CGWCG	2 cut(s)	441, 617
HpyAV	CCTTC	1 cut(s)	525
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	367, 439
HpyCH4V	TGCA	3 cut(s)	252, 292, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	2 cut(s)	359, 662
HpySE526I	ACGT	2 cut(s)	367, 439
Hsp92II	CATG	1 cut(s)	645
Kpn2I	TCCGGA	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	54, 177, 321, 465, 595
LmnI	GCTCC	1 cut(s)	493
MaeII	ACGT	2 cut(s)	367, 439
MaeIII	GTNAC	3 cut(s)	18, 450, 607
MalI	GATC	5 cut(s)	56, 179, 323, 467, 597
MboI	GATC	5 cut(s)	54, 177, 321, 465, 595
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	226, 294
MluCI	AATT	5 cut(s)	11, 537, 584, 684, 696
MmeI	TCCRAC	1 cut(s)	121
MroI	TCCGGA	1 cut(s)	671
MseI	TTAA	2 cut(s)	371, 407
MslI	CAYNNNNRTG	2 cut(s)	386, 614
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	653
NdeII	GATC	5 cut(s)	54, 177, 321, 465, 595
NlaIII	CATG	1 cut(s)	645
NmuCI	GTSAC	2 cut(s)	450, 607
OliI	CACNNNNGTG	1 cut(s)	614
PaqCI	CACCTGC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	144, 258
PkrI	GCNGC	1 cut(s)	272
PshAI	GACNNNNGTC	2 cut(s)	442, 566
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	190, 265
RsaNI	GTAC	2 cut(s)	189, 264
RseI	CAYNNNNRTG	2 cut(s)	386, 614
SalI	GTCGAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	371, 407
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	5 cut(s)	54, 177, 321, 465, 595
Sau96I	GGNCC	1 cut(s)	568
ScaI	AGTACT	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	226, 294
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	386, 614
Sse9I	AATT	5 cut(s)	11, 537, 584, 684, 696
SsiI	CCGC	2 cut(s)	271, 317
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	370, 442
TaqI	TCGA	2 cut(s)	335, 422
TasI	AATT	5 cut(s)	11, 537, 584, 684, 696
TatI	WGTACW	2 cut(s)	188, 263
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	144, 258
Tru1I	TTAA	2 cut(s)	371, 407
Tru9I	TTAA	2 cut(s)	371, 407
TscAI	CASTG	2 cut(s)	205, 558
TseFI	GTSAC	2 cut(s)	450, 607
Tsp45I	GTSAC	2 cut(s)	450, 607
TspRI	CASTG	2 cut(s)	205, 558
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.