AT1G65760

F-box protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
24458591 .. 24459715
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65760.1

Sequence Viewer

Length: 1089 bp
ATGGTTGATTGCGATTGGTCTAACTTACCGGAGGAGCTCCTCCACATGATCGTCCTCCTATTATTCTCCGTAGTCGAACTGAAACGTTTCAGGAGCATTTGCAGATCTTGGCGCTCCTCTACTTCGGGCGTGAACAGGAACAATCCTTTCCCTAGTCGCCCTCGCATCCACTTCGATCCCATCGACCCTAGCGAAACCCTATCATCCGATGATTCCTACATTAGCAGACCCGGTGCGTTTCTCTCACGCGCCGCCTTTTTCCGAGTCACTCTCTCCTCCTCCTCGAGCAAGGGCTGGATGATCAAATCAGACATGGACATCAACTCCGGGAGATTCCGTCTCCTCAACGTTCTCTCACGTTACCCGTTGCGTCTTTATTCCGAGAGCATCGATCTTTTGGAGTTCACTGTCTCCGAGATTCGAGAAGCCTACACGGTTCTTAACACTGCCAAGAGAAGATCAGCAACTAAAGGATACCAAAGAAGTGCTCCTGTCAAAGTCAAGGAAGGAGAAGGTCATCGTGATGGAGTTCTCGGAATTGGTCGGGATGGGAATATCAACTACTGGGATGGAAATGTCTTGTCGGAACTTAAACAAATGGGTGATCATTTCTCCGACATTATAGTTCACAAAGGACTGATAAACTCCGATCTTGAGATCTCTAGGTTTGGAACTTCACTCGATGAAAACATCACTGATGGCTGTTGGGGAGACTTGAGATTTGTGGAAGGCTGTGGAGAGCTTTATATTGTGGAGCGCCTTCCGAAAAATACCCGAAAGAGAAAAGCTGGGGACTTTTTTCACAACTCACGAACGGTTGGTTTCAAGGCTTACAAGATGGATGAGGAATTAGCAAAATGGATAGAAATTAAGACCTTGGGAGACAATGCGTTTTTGATGGGTACCGATACTTGTTTCTCGGTTTTGGCTCATGAGGTTTACGGATGCCTACCAAACTCTATTTACTACACCGAGAATACATGGCCTAAGGTGTGCAAGCTAGAGGATGGTAATGGAAGTAGTATCATCGTAACAATGTCGGAGTCTTCTAAGAGTTCTTTCGAAATGTTTTATCCTAGCTTTGTCTGA

Protein Analysis

362

Amino Acids

41.1

Weight (kDa)

6.42

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 93 - 325 6.8e-22 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 902
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 252
AclI AACGTT 2 cut(s) 85, 348
AclWI GGATC 1 cut(s) 170
AfaI GTAC 1 cut(s) 904
AgsI TTSAA 1 cut(s) 826
AluBI AGCT 5 cut(s) 37, 742, 788, 1000, 1080
AluI AGCT 5 cut(s) 37, 742, 788, 1000, 1080
Alw21I GWGCWC 2 cut(s) 39, 490
Alw26I GTCTC 4 cut(s) 344, 415, 705, 876
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 983
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 902
AspLEI GCGC 3 cut(s) 114, 251, 759
AsuC2I CCSGG 2 cut(s) 231, 328
AsuHPI GGTGA 1 cut(s) 614
AsuII TTCGAA 1 cut(s) 1062
AvaI CYCGRG 1 cut(s) 283
AxyI CCTNAGG 1 cut(s) 987
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 1038
Bbv12I GWGCWC 2 cut(s) 39, 490
BccI CCATC 8 cut(s) 188, 518, 542, 563, 692, 832, 892, 1001
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciVI GTATCC 1 cut(s) 467
BclI TGATCA 2 cut(s) 300, 604
BcnI CCSGG 2 cut(s) 231, 328
BcoDI GTCTC 4 cut(s) 344, 415, 705, 876
BfaI CTAG 5 cut(s) 153, 189, 663, 1001, 1077
BfoI RGCGCY 2 cut(s) 115, 760
BfuI GTATCC 1 cut(s) 467
BglII AGATCT 2 cut(s) 104, 657
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 231, 328
BmeT110I CYCGRG 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 904
BmrFI CCNGG 2 cut(s) 231, 328
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 3 cut(s) 174, 396, 935
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 1038
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu14I TTCGAA 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 674, 736
BpuMI CCSGG 2 cut(s) 231, 328
Bsa29I ATCGAT 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 876
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 308, 322, 338, 352
Bse1I ACTGG 1 cut(s) 569
Bse21I CCTNAGG 1 cut(s) 987
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 8 cut(s) 165, 203, 303, 553, 574, 847, 950, 1012
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 7 cut(s) 29, 47, 106, 265, 268, 271, 332
BseYI CCCAGC 1 cut(s) 788
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 985
BshNI GGYRCC 1 cut(s) 902
BshVI ATCGAT 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 39, 490
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 3 cut(s) 29, 231, 327
BslFI GGGAC 1 cut(s) 806
BsmAI GTCTC 4 cut(s) 344, 415, 705, 876
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 1 cut(s) 985
BsoBI CYCGRG 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 1062
Bsp1286I GDGCHC 2 cut(s) 39, 490
Bsp143I GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 985
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 1 cut(s) 904
BspPI GGATC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 1062
BspT107I GGYRCC 1 cut(s) 902
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
BssT1I CCWWGG 1 cut(s) 876
Bst4CI ACNGT 3 cut(s) 409, 436, 817
BstBI TTCGAA 1 cut(s) 1062
BstC8I GCNNGC 1 cut(s) 998
BstDEI CTNAG 2 cut(s) 987, 1050
BstF5I GGATG 8 cut(s) 165, 203, 303, 553, 574, 847, 950, 1012
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 2 cut(s) 115, 760
BstHHI GCGC 3 cut(s) 114, 251, 759
BstKTI GATC 9 cut(s) 51, 107, 178, 303, 394, 461, 607, 652, 660
BstMAI GTCTC 4 cut(s) 344, 415, 705, 876
BstMBI GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
BstSCI CCNGG 2 cut(s) 229, 326
BstUI CGCG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 2 cut(s) 104, 657
BstYI RGATCY 2 cut(s) 104, 657
Bsu15I ATCGAT 1 cut(s) 390
Bsu36I CCTNAGG 1 cut(s) 987
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 1 cut(s) 985
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 8 cut(s) 165, 203, 303, 553, 574, 847, 950, 1012
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 405, 444, 693
Cac8I GCNNGC 1 cut(s) 998
CciI TCATGA 1 cut(s) 931
CfoI GCGC 3 cut(s) 114, 251, 759
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 903
CviAII CATG 4 cut(s) 46, 313, 932, 981
CviQI GTAC 1 cut(s) 903
DdeI CTNAG 2 cut(s) 987, 1050
DpnI GATC 9 cut(s) 50, 106, 177, 302, 393, 460, 606, 651, 659
DpnII GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 876
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 4 cut(s) 49, 316, 935, 984
FaiI YATR 6 cut(s) 47, 314, 623, 747, 933, 982
FaqI GGGAC 1 cut(s) 806
FatI CATG 4 cut(s) 45, 312, 931, 980
FbaI TGATCA 2 cut(s) 300, 604
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 8 cut(s) 152, 190, 310, 560, 581, 854, 957, 1019
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 5 cut(s) 153, 189, 663, 1001, 1077
GlaI GCGC 3 cut(s) 113, 250, 758
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 792
HaeII RGCGCY 2 cut(s) 115, 760
HaeIII GGCC 1 cut(s) 985
HapII CCGG 3 cut(s) 29, 231, 327
HgaI GACGC 1 cut(s) 359
HhaI GCGC 3 cut(s) 114, 251, 759
Hin1II CATG 4 cut(s) 49, 316, 935, 984
Hin6I GCGC 3 cut(s) 112, 249, 757
HinP1I GCGC 3 cut(s) 112, 249, 757
HinfI GANTC 5 cut(s) 212, 264, 333, 418, 1043
HpaII CCGG 3 cut(s) 29, 231, 327
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 4 cut(s) 133, 405, 628, 940
Hpy188III TCNNGA 7 cut(s) 91, 422, 521, 545, 653, 810, 932
Hpy8I GTNNAC 4 cut(s) 133, 405, 628, 940
HpyAV CCTTC 4 cut(s) 500, 506, 722, 770
HpyCH4III ACNGT 3 cut(s) 409, 436, 817
HpyCH4IV ACGT 3 cut(s) 85, 348, 358
HpyCH4V TGCA 2 cut(s) 102, 996
HpyF3I CTNAG 2 cut(s) 987, 1050
HpySE526I ACGT 3 cut(s) 85, 348, 358
Hsp92II CATG 4 cut(s) 49, 316, 935, 984
HspAI GCGC 3 cut(s) 112, 249, 757
KpnI GGTACC 1 cut(s) 906
Ksp22I TGATCA 2 cut(s) 300, 604
Kzo9I GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
LmnI GCTCC 6 cut(s) 34, 42, 93, 119, 493, 754
LpnPI CCDG 9 cut(s) 42, 76, 121, 244, 280, 340, 504, 550, 774
LweI GCATC 3 cut(s) 174, 396, 935
MaeI CTAG 5 cut(s) 153, 189, 663, 1001, 1077
MaeII ACGT 3 cut(s) 85, 348, 358
MaeIII GTNAC 3 cut(s) 265, 359, 1030
MalI GATC 9 cut(s) 50, 106, 177, 302, 393, 460, 606, 651, 659
MboI GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
MboII GAAGA 2 cut(s) 468, 1038
MflI RGATCY 2 cut(s) 104, 657
MhlI GDGCHC 2 cut(s) 39, 490
MluCI AATT 3 cut(s) 537, 848, 867
MlyI GAGTC 2 cut(s) 273, 1052
MmeI TCCRAC 3 cut(s) 564, 639, 1020
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 3 cut(s) 441, 591, 870
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 3 cut(s) 29, 231, 327
MspR9I CCNGG 2 cut(s) 231, 328
MvnI CGCG 1 cut(s) 249
NciI CCSGG 2 cut(s) 231, 328
NdeII GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
NlaIII CATG 4 cut(s) 49, 316, 935, 984
NlaIV GGNNCC 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 265
NspV TTCGAA 1 cut(s) 1062
PaeR7I CTCGAG 1 cut(s) 283
PagI TCATGA 1 cut(s) 931
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 189
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 212, 333, 418
PfoI TCCNGGA 1 cut(s) 326
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 2 cut(s) 272, 1051
PpsI GAGTC 2 cut(s) 272, 1051
Psp124BI GAGCTC 1 cut(s) 39
Psp1406I AACGTT 2 cut(s) 85, 348
PspFI CCCAGC 1 cut(s) 788
PspN4I GGNNCC 1 cut(s) 904
PspXI VCTCGAGB 1 cut(s) 283
PsuI RGATCY 2 cut(s) 104, 657
RsaI GTAC 1 cut(s) 904
RsaNI GTAC 1 cut(s) 903
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 441, 591, 870
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 9 cut(s) 48, 104, 175, 300, 391, 458, 604, 649, 657
SchI GAGTC 2 cut(s) 273, 1052
ScrFI CCNGG 2 cut(s) 231, 328
SduI GDGCHC 2 cut(s) 39, 490
SfaNI GCATC 3 cut(s) 174, 396, 935
Sfr274I CTCGAG 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 1062
SlaI CTCGAG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 3 cut(s) 283, 653, 715
SmoI CTYRAG 3 cut(s) 283, 653, 715
Sse9I AATT 3 cut(s) 537, 848, 867
SsiI CCGC 1 cut(s) 252
SspMI CTAG 5 cut(s) 153, 189, 663, 1001, 1077
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 229, 326
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 3 cut(s) 409, 436, 817
TaiI ACGT 3 cut(s) 88, 351, 361
TaqI TCGA 8 cut(s) 75, 174, 183, 284, 390, 421, 681, 1062
TasI AATT 3 cut(s) 537, 848, 867
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 3 cut(s) 212, 333, 418
Tru1I TTAA 3 cut(s) 441, 591, 870
Tru9I TTAA 3 cut(s) 441, 591, 870
TscAI CASTG 3 cut(s) 412, 451, 700
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 3 cut(s) 58, 326, 957
TspRI CASTG 3 cut(s) 412, 451, 700
XhoI CTCGAG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 5 cut(s) 153, 189, 663, 1001, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.