RchiOBHm_Chr2g0098091

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
10560210 .. 10561012
803 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47290

Sequence Viewer

Length: 699 bp
ATGTGTTTACTGGATCTGGTGACTGATTCACTGGTCAGTCATGAGTTCAATCTATTGGACTTTCGGCTTGTGGAGTTGCGAAAGTCATATGTTCTTAAAGATACCGAGTATGTCTGTTTTCCTGTTGATTCTGTACAAAAAGTGGTGGTTATGACTGATGAGCATTTGGACATTGATAATGTGTATGCGGTATTTATGATTTTTAAGAGAGGGAATCTGGGTTTTGTGAGGGTTGGGGATGAGAACTTGATCAATGTCGATGAACAAAACTCGGATTATCGTGATATCATCATTTACAAGGGTCAATGCTATGTTGTTGATTATTGGGGGATAATTTCATGGGTCAATTCAGCTTTGGAGGGCAATAGGAGAGTTAGGTACTCACACCAAGAGGATGAATATCCTGAAGCAATTGGTTTTAAAGTTTATAAGCTGGATCAAGAATGGGGTAATTATAAATGGGTCAATGTGAAAGACTTGGGAGATCGAGTGTTTATTTTAAGCAATGATGGGTCTTTCTCTGTCTCCACCAGAGAGTTTGCTGGAGTGAAAGGAAATTGCATTTTCTTCATTGCACGAGCATCAGCAAGGTGTTACAGTTGTGTGTTCAGTTTGGAGGATGGTAGGATTAGGAACCTAGCATCTTCGGAGTGTTCTCAGATGGTCCAGCCACCTTCAAATTTGCTCAACCCCAATTGA

Protein Analysis

232

Amino Acids

26.74

Weight (kDa)

4.88

Isoelectric Point (pI)

20.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 43 - 115 4.9e-08 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 131 - 192 6.3e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 429, 456
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 21, 444
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 135, 380
AgsI TTSAA 2 cut(s) 49, 678
AluBI AGCT 2 cut(s) 353, 433
AluI AGCT 2 cut(s) 353, 433
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 2 cut(s) 21, 444
ApoI RAATTY 1 cut(s) 679
AspS9I GGNCC 1 cut(s) 664
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 664
BauI CACGAG 1 cut(s) 576
BccI CCATC 3 cut(s) 503, 614, 655
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 1 cut(s) 638
Bme18I GGWCC 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 635
BmsI GCATC 2 cut(s) 590, 650
BpmI CTGGAG 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bse1I ACTGG 2 cut(s) 15, 36
Bse3DI GCAATG 2 cut(s) 511, 570
Bse8I GATNNNNATC 1 cut(s) 399
BseGI GGATG 3 cut(s) 244, 400, 625
BseJI GATNNNNATC 1 cut(s) 399
BseMI GCAATG 2 cut(s) 511, 570
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 2 cut(s) 15, 36
BsmAI GTCTC 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 4 cut(s) 13, 249, 436, 484
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 670
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 635
BspPI GGATC 2 cut(s) 21, 444
BsrDI GCAATG 2 cut(s) 511, 570
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 2 cut(s) 15, 36
BssMI GATC 4 cut(s) 13, 249, 436, 484
BssSI CACGAG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 576
Bst4CI ACNGT 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 3 cut(s) 244, 400, 625
BstKTI GATC 4 cut(s) 16, 252, 439, 487
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 4 cut(s) 13, 249, 436, 484
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BtsCI GGATG 3 cut(s) 244, 400, 625
BtsIMutI CAGTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 664
Csp6I GTAC 2 cut(s) 134, 379
CviAII CATG 2 cut(s) 41, 339
CviJI RGCY 4 cut(s) 67, 353, 433, 670
CviKI_1 RGCY 4 cut(s) 67, 353, 433, 670
CviQI GTAC 2 cut(s) 134, 379
DdeI CTNAG 1 cut(s) 657
DpnI GATC 4 cut(s) 15, 251, 438, 486
DpnII GATC 4 cut(s) 13, 249, 436, 484
DraI TTTAAA 1 cut(s) 421
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 286
FaeI CATG 2 cut(s) 44, 342
FatI CATG 2 cut(s) 40, 338
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 249
FokI GGATG 3 cut(s) 251, 407, 632
FspBI CTAG 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 564
Hin1II CATG 2 cut(s) 44, 342
HinfI GANTC 3 cut(s) 26, 128, 214
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 274, 649, 660
Hpy188III TCNNGA 4 cut(s) 41, 281, 404, 440
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 684
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 2 cut(s) 561, 575
HpyF3I CTNAG 1 cut(s) 657
Hsp92II CATG 2 cut(s) 44, 342
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 4 cut(s) 13, 249, 436, 484
LpnPI CCDG 9 cut(s) 2, 17, 135, 203, 417, 419, 528, 544, 680
LweI GCATC 2 cut(s) 590, 650
MaeI CTAG 1 cut(s) 638
MaeIII GTNAC 2 cut(s) 19, 593
MalI GATC 4 cut(s) 15, 251, 438, 486
MboI GATC 4 cut(s) 13, 249, 436, 484
MboII GAAGA 2 cut(s) 559, 636
MfeI CAATTG 2 cut(s) 411, 694
MflI RGATCY 1 cut(s) 13
MluCI AATT 7 cut(s) 333, 346, 411, 451, 556, 679, 694
MnlI CCTC 5 cut(s) 203, 222, 352, 385, 610
MseI TTAA 4 cut(s) 96, 204, 420, 500
MunI CAATTG 2 cut(s) 411, 694
NdeI CATATG 1 cut(s) 88
NdeII GATC 4 cut(s) 13, 249, 436, 484
NlaIII CATG 2 cut(s) 44, 342
NlaIV GGNNCC 1 cut(s) 635
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 40
PfeI GAWTC 3 cut(s) 26, 128, 214
PsiI TTATAA 2 cut(s) 429, 456
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 1 cut(s) 664
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 2 cut(s) 135, 380
RsaNI GTAC 2 cut(s) 134, 379
SaqAI TTAA 4 cut(s) 96, 204, 420, 500
Sau3AI GATC 4 cut(s) 13, 249, 436, 484
Sau96I GGNCC 1 cut(s) 664
SetI ASST 6 cut(s) 355, 380, 435, 593, 639, 676
SfaNI GCATC 2 cut(s) 590, 650
SinI GGWCC 1 cut(s) 664
Sse9I AATT 7 cut(s) 333, 346, 411, 451, 556, 679, 694
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 638
TaaI ACNGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 258, 487
TasI AATT 7 cut(s) 333, 346, 411, 451, 556, 679, 694
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 3 cut(s) 26, 128, 214
Tru1I TTAA 4 cut(s) 96, 204, 420, 500
Tru9I TTAA 4 cut(s) 96, 204, 420, 500
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 276, 327, 411, 559
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 1 cut(s) 679
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.