MD02G1122000.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
9939688 .. 9941951
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1122000.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGAGACGAAGAAGGTGGAGTGGTCCGATCTTCCCAAGGAGCTATGGCCGGCGATCGGAAACCGCGTTGACAACCGCATCGACGTTCTCCGGTTCCGCAGCGTCTGCAAGACATGGCGCTCCGCCGTCCCCCCTTTTCAGCAACCCATTACTCCTCCCCTGCCCCTCAGCTTCTCTTCTCCTTCCGCCGCGGCGGATGGCGGAGCTTTGCAGACTCAATCTAAAGCTCTACTCTTTCAAATCACAGTCTACCGCATGGAATTTCTAAAACCCAATGCGTCAAAACCGTGGCTGGTGAAGTTTGAGGAGTCGAATTCTGGTGATCTGCGATTGCTGCATCCAATCACTAATAAGCCATTGAGGTACTACCCATCTAATACTCCAAAGGATTTCAATTTGTTGGACTTTAAGATTGTCGAATTGCGAAAATCGTATAGTCTGCAATTTAGGAATAGTATCAATGTTGTTATGGCATGTGTGAACAAAGTGGTAGTCATGGATGCAAAAAACTTGAATGATTGTGGTGTTTTTATGATTTACAATGGCGGAAAGTTGGGTTTCGTGAGGTCTGGAGACGAGAAATGGACCCATGTGGATGAACAAAACTCTCACTATGATGATATCATTGTGTATAAGGGTCAATGCTATGTTGTTGATAGATGCGGAACAATTTCATGGGTCAATTCTGATTTGAATGTGATCCAATTTTCGCCTCCGTTATTTGGGCTTGGTGGGAGGAAGCATTTGGTTGAGTCGTGTGGCGATCTTTTCGTGGTTGATCGGTACCTTGACAAGTGTGACATGGAAAGGTTGCCCGAGTACAATGTCGAGAATCAAAATGTTAACATTTTTGGTGCTAATTTTCAAGCTCTTCCTCATCCATTTGATGCTCCTCATCATCCTTTCGCCGCTCCTCCTAATCCATTCGTAGCTCCTCCTCATCCACTCGCTGCTCCTTTTGACGGTGAAGCTGTGGATTTTAAAGTTTATAAGTTGGATCAAGAATGGGGTAAGTGGGTTGATGTGAAAAACTTGGGAGATCAAGTGTTTATTTTGAGCAATGATGGGTCTTTCGCTGTCTCGACTGGAGACTTGGGTAAAGTGAAGGGAAATTGCATTTTATTCACCGATCAAAAGCTTCCTCATTTACAAGGAATTGGAGGATCTAAAAAAAGGTGTATTAGTCGCGTGTTCATGATGGAGAATGGCATCATTCGGAACCTAGCTGCTTTGCCCACCTATTACAAGATGCTCCAGCCACCATCCAGTTGGCTCAGCCCTGCTCTTGATGATGTCTCTCGCCATCGGCTTGCTGATCGGTTAATGGAAATTGATGACAGCGAATGA

Protein Analysis

449

Amino Acids

50.61

Weight (kDa)

6.8

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 93 - 382 2.2e-38 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 990
Acc65I GGTACC 1 cut(s) 783
AccB1I GGYRCC 1 cut(s) 783
AccBSI CCGCTC 1 cut(s) 911
AccI GTMKAC 1 cut(s) 249
AccII CGCG 3 cut(s) 66, 191, 1188
AclWI GGATC 3 cut(s) 694, 1005, 1171
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 2 cut(s) 260, 313
AfaI GTAC 3 cut(s) 365, 785, 821
AfiI CCNNNNNNNGG 3 cut(s) 56, 722, 962
AgsI TTSAA 5 cut(s) 239, 394, 514, 694, 866
AluBI AGCT 9 cut(s) 43, 171, 206, 227, 869, 932, 971, 1138, 1226
AluI AGCT 9 cut(s) 43, 171, 206, 227, 869, 932, 971, 1138, 1226
Alw26I GTCTC 4 cut(s) 567, 1083, 1084, 1300
AlwI GGATC 3 cut(s) 694, 1005, 1171
AlwNI CAGNNNCTG 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 815
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 4 cut(s) 99, 334, 950, 1226
ApoI RAATTY 2 cut(s) 260, 313
ArsI GACNNNNNNTTYG 2 cut(s) 477, 509
Asp700I GAANNNNTTC 1 cut(s) 670
Asp718I GGTACC 1 cut(s) 783
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 24, 585
AsuHPI GGTGA 4 cut(s) 307, 332, 977, 1117
AvaI CYCGRG 1 cut(s) 815
AvaII GGWCC 2 cut(s) 24, 585
BanI GGYRCC 1 cut(s) 783
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 111, 321, 937, 1213
BccI CCATC 6 cut(s) 191, 379, 1058, 1192, 1270, 1311
BceAI ACGGC 1 cut(s) 110
BcoDI GTCTC 4 cut(s) 567, 1083, 1084, 1300
BfaI CTAG 1 cut(s) 1223
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 7 cut(s) 100, 189, 192, 335, 909, 951, 1227
BlpI GCTNAGC 1 cut(s) 1274
BlsI GCNGC 7 cut(s) 101, 190, 193, 336, 910, 952, 1228
Bme18I GGWCC 2 cut(s) 24, 585
BmeT110I CYCGRG 1 cut(s) 815
BmgT120I GGNCC 2 cut(s) 24, 585
BmiI GGNNCC 4 cut(s) 95, 587, 785, 1220
BmsI GCATC 7 cut(s) 87, 346, 490, 650, 877, 1218, 1239
BpmI CTGGAG 3 cut(s) 591, 1107, 1238
Bpu10I CCTNAGC 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 1274
BsaJI CCNNGG 3 cut(s) 36, 189, 287
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 722, 962
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 1090, 1266
Bse3DI GCAATG 1 cut(s) 1066
BseDI CCNNGG 3 cut(s) 36, 189, 287
BseGI GGATG 8 cut(s) 202, 337, 505, 601, 877, 898, 940, 1262
BseLI CCNNNNNNNGG 3 cut(s) 56, 722, 962
BseMI GCAATG 1 cut(s) 1066
BseMII CTCAG 2 cut(s) 181, 1288
BseNI ACTGG 2 cut(s) 1090, 1266
BseRI GAGGAG 6 cut(s) 144, 320, 882, 903, 924, 927
BseXI GCAGC 4 cut(s) 111, 321, 937, 1213
Bsh1236I CGCG 3 cut(s) 66, 191, 1188
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 783
BsiEI CGRYCG 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 815
BsiSI CCGG 2 cut(s) 50, 91
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 56, 722, 962
BsmAI GTCTC 4 cut(s) 567, 1083, 1084, 1300
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 815
Bsp1720I GCTNAGC 1 cut(s) 1274
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 180, 1287
BspFNI CGCG 3 cut(s) 66, 191, 1188
BspHI TCATGA 1 cut(s) 1194
BspLI GGNNCC 4 cut(s) 95, 587, 785, 1220
BspPI GGATC 3 cut(s) 694, 1005, 1171
BspQI GCTCTTC 1 cut(s) 876
BspT107I GGYRCC 1 cut(s) 783
BsrBI CCGCTC 1 cut(s) 911
BsrDI GCAATG 1 cut(s) 1066
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 2 cut(s) 1090, 1266
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 36, 189, 287
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 3 cut(s) 247, 288, 965
Bst6I CTCTTC 2 cut(s) 181, 876
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 51, 1311
BstDEI CTNAG 2 cut(s) 167, 1274
BstDSI CCRYGG 2 cut(s) 189, 287
BstF5I GGATG 8 cut(s) 202, 337, 505, 601, 877, 898, 940, 1262
BstFNI CGCG 3 cut(s) 66, 191, 1188
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstMAI GTCTC 4 cut(s) 567, 1083, 1084, 1300
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 105, 334
BstNSI RCATGY 1 cut(s) 477
BstUI CGCG 3 cut(s) 66, 191, 1188
BstV1I GCAGC 4 cut(s) 111, 321, 937, 1213
BstX2I RGATCY 1 cut(s) 1163
BstXI CCANNNNNNTGG 1 cut(s) 1269
BstYI RGATCY 1 cut(s) 1163
BsuRI GGCC 1 cut(s) 49
BtgI CCRYGG 2 cut(s) 189, 287
BtsCI GGATG 8 cut(s) 202, 337, 505, 601, 877, 898, 940, 1262
Cac8I GCNNGC 2 cut(s) 51, 1311
CaiI CAGNNNCTG 1 cut(s) 105
CciI TCATGA 1 cut(s) 1194
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 24, 585
Cfr42I CCGCGG 1 cut(s) 192
CseI GACGC 2 cut(s) 91, 267
Csp6I GTAC 3 cut(s) 364, 784, 820
CviAII CATG 8 cut(s) 114, 256, 474, 496, 590, 675, 802, 1195
CviQI GTAC 3 cut(s) 364, 784, 820
DdeI CTNAG 2 cut(s) 167, 1274
DraI TTTAAA 1 cut(s) 982
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 181, 876
EarI CTCTTC 2 cut(s) 181, 876
EciI GGCGGA 5 cut(s) 112, 175, 209, 216, 561
Eco130I CCWWGG 1 cut(s) 36
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 24, 585
Eco88I CYCGRG 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 313
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 8 cut(s) 117, 259, 477, 499, 593, 678, 805, 1198
FaqI GGGAC 1 cut(s) 113
FatI CATG 8 cut(s) 113, 255, 473, 495, 589, 674, 801, 1194
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 7 cut(s) 100, 189, 192, 335, 909, 951, 1227
FokI GGATG 8 cut(s) 209, 324, 512, 608, 864, 885, 927, 1249
Fsp4HI GCNGC 7 cut(s) 100, 189, 192, 335, 909, 951, 1227
FspBI CTAG 1 cut(s) 1223
GlaI GCGC 1 cut(s) 119
GluI GCNGC 7 cut(s) 100, 189, 192, 335, 909, 951, 1227
GsuI CTGGAG 3 cut(s) 591, 1107, 1238
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 50, 91
HgaI GACGC 2 cut(s) 91, 267
HhaI GCGC 1 cut(s) 120
Hin1II CATG 8 cut(s) 117, 259, 477, 499, 593, 678, 805, 1198
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 2 cut(s) 70, 844
HindII GTYRAC 2 cut(s) 70, 844
HindIII AAGCTT 1 cut(s) 1136
HinfI GANTC 4 cut(s) 214, 308, 752, 832
HpaI GTTAAC 1 cut(s) 844
HpaII CCGG 2 cut(s) 50, 91
HphI GGTGA 4 cut(s) 307, 332, 977, 1117
Hpy166II GTNNAC 4 cut(s) 70, 250, 481, 844
Hpy188I TCNGA 4 cut(s) 28, 59, 688, 1218
Hpy188III TCNNGA 7 cut(s) 562, 570, 829, 1001, 1081, 1195, 1286
Hpy8I GTNNAC 4 cut(s) 70, 250, 481, 844
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 7, 192, 1099
HpyCH4III ACNGT 3 cut(s) 247, 288, 965
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 6 cut(s) 108, 211, 337, 442, 503, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 334
HpyF3I CTNAG 2 cut(s) 167, 1274
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 8 cut(s) 117, 259, 477, 499, 593, 678, 805, 1198
HspAI GCGC 1 cut(s) 118
KpnI GGTACC 1 cut(s) 787
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 844
KspI CCGCGG 1 cut(s) 192
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 8 cut(s) 40, 125, 203, 895, 916, 937, 958, 1257
Lsp1109I GCAGC 4 cut(s) 111, 321, 937, 1213
LweI GCATC 7 cut(s) 87, 346, 490, 650, 877, 1218, 1239
MaeI CTAG 1 cut(s) 1223
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 797
MbiI CCGCTC 1 cut(s) 911
MboII GAAGA 4 cut(s) 22, 23, 168, 863
MflI RGATCY 1 cut(s) 1163
MlyI GAGTC 3 cut(s) 208, 317, 761
MmeI TCCRAC 2 cut(s) 381, 975
MroNI GCCGGC 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 670
MseI TTAA 4 cut(s) 408, 843, 981, 1322
MslI CAYNNNNRTG 2 cut(s) 594, 615
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 50, 91
MvnI CGCG 3 cut(s) 66, 191, 1188
MwoI GCNNNNNNNGC 2 cut(s) 105, 334
NaeI GCCGGC 1 cut(s) 51
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 8 cut(s) 117, 259, 477, 499, 593, 678, 805, 1198
NlaIV GGNNCC 4 cut(s) 95, 587, 785, 1220
NmuCI GTSAC 1 cut(s) 797
NspI RCATGY 1 cut(s) 477
PagI TCATGA 1 cut(s) 1194
PciSI GCTCTTC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 670
PfeI GAWTC 1 cut(s) 832
PkrI GCNGC 7 cut(s) 101, 190, 193, 336, 910, 952, 1228
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 3 cut(s) 208, 316, 760
PpsI GAGTC 3 cut(s) 208, 316, 760
PsiI TTATAA 1 cut(s) 990
PspN4I GGNNCC 4 cut(s) 95, 587, 785, 1220
PspPI GGNCC 2 cut(s) 24, 585
PstNI CAGNNNCTG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 1163
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 3 cut(s) 365, 785, 821
RsaNI GTAC 3 cut(s) 364, 784, 820
RseI CAYNNNNRTG 2 cut(s) 594, 615
SacII CCGCGG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 4 cut(s) 408, 843, 981, 1322
SatI GCNGC 7 cut(s) 100, 189, 192, 335, 909, 951, 1227
Sau96I GGNCC 2 cut(s) 24, 585
SchI GAGTC 3 cut(s) 208, 317, 761
SfaNI GCATC 7 cut(s) 87, 346, 490, 650, 877, 1218, 1239
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SinI GGWCC 2 cut(s) 24, 585
SmiMI CAYNNNNRTG 2 cut(s) 594, 615
SspMI CTAG 1 cut(s) 1223
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 247, 288, 965
TaiI ACGT 1 cut(s) 87
TaqI TCGA 5 cut(s) 81, 311, 417, 828, 1082
TatI WGTACW 1 cut(s) 819
TauI GCSGC 3 cut(s) 191, 194, 911
TfiI GAWTC 1 cut(s) 832
Tru1I TTAA 4 cut(s) 408, 843, 981, 1322
Tru9I TTAA 4 cut(s) 408, 843, 981, 1322
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 4 cut(s) 99, 334, 950, 1226
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 3 cut(s) 612, 663, 1183
TspGWI ACGGA 1 cut(s) 705
VpaK11BI GGWCC 2 cut(s) 24, 585
XapI RAATTY 2 cut(s) 260, 313
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 1266
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 670
XspI CTAG 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.