Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

14585416 .. 14586144

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTGCTGAGATTGTTGATTGTGCTATTCTGGTTATCTCTGATAAGGGAAATTTGGGTTTTGCTAAAAGTGGAGATGAGAAACTCACATGGTTTAGTAATGGAGAATTGGCTGGGTGCAAAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGGGATCTTCCCCAAGCGGTTCCCAGATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCGTATTCTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

4.48

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	293
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	253, 289
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BseMII	CTCAG	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	253, 289
BspPI	GGATC	1 cut(s)	244
BssMI	GATC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	9, 142, 170, 208
BstKTI	GATC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	214
CviAII	CATG	3 cut(s)	90, 199, 294
CviJI	RGCY	4 cut(s)	113, 268, 283, 288
CviKI_1	RGCY	4 cut(s)	113, 268, 283, 288
DdeI	CTNAG	4 cut(s)	9, 142, 170, 208
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	3 cut(s)	93, 202, 297
FaiI	YATR	4 cut(s)	91, 200, 219, 295
FatI	CATG	3 cut(s)	89, 198, 293
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	93, 202, 297
Hpy188I	TCNGA	3 cut(s)	43, 145, 228
Hpy188III	TCNNGA	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	120, 132
HpyF3I	CTNAG	4 cut(s)	9, 142, 170, 208
Hsp92II	CATG	3 cut(s)	93, 202, 297
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	6 cut(s)	17, 18, 99, 201, 269, 293
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	1 cut(s)	231
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	4 cut(s)	52, 107, 127, 276
MluNI	TGGCCA	1 cut(s)	268
MnlI	CCTC	2 cut(s)	205, 282
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	268
MunI	CAATTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	222
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	93, 202, 297
NlaIV	GGNNCC	2 cut(s)	253, 289
NmeAIII	GCCGAG	1 cut(s)	264
NspI	RCATGY	1 cut(s)	297
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	222
PscI	ACATGT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	253, 289
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	2 cut(s)	274, 285
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	4 cut(s)	52, 107, 127, 276
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	285
TasI	AATT	4 cut(s)	52, 107, 127, 276
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	2 cut(s)	162, 187
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.