Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

13585779 .. 13586693

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCTTCTTCAGAATCCGATCACCTCCAGGCGAATCAGGTACACAAATGGCCAGTCGTCGTCTCCTAAATGTTTCAATTTGTTGGAGTTTAAAATGATCAAATTAGGGAAGTCGTATTTTCTGAGATACATCCTTGGCTCTAGTTCTGTTTGTGGTTTAAAGAAAGTGATTTTAATGCCTGCTGAGATTGTTGATTGTGCTATTCTGGTTATCTCTGATAAGGGAAATTTGGGTTTTGCTAAAAGTGGAGATGAGAAACTTACATGGTTTAGTAATGGAGGTTTTGTTTTTGATGATGTTATTGTTTATAAGGGTCAGCCATATGTGGTGGATAGCTTGGGTTATGTTTTTACGATTGATGTGTCTTCAGAAGTGATAGTGAAGATTTCGTCGAAAGTGATTGGTTTTGGTGGGAGGAAGCATTTGGTAGAGTCTTGTGGAGAGCTTTATGTGGTCGATATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTAGATTTTTCTTTATTTGTCCGTTGGCGTCATGGAAGACACCAAAGATATCAGTCTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATCGAGCGTTTTTCTTGGCTATGGATTGCTGTTTCTCTGTTTCGGCCCAAGAATTGGCTGGGTGCAGAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGAGATCTTCCCCAGGCGATTCCCAAATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCGTATTCTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

304

Amino Acids

34.3

Weight (kDa)

6.15

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 252	1.4e-36	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	709
AcoI	YGGCCR	2 cut(s)	49, 866
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	535
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	893
AgsI	TTSAA	3 cut(s)	76, 613, 638
AjnI	CCWGG	2 cut(s)	26, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	4 cut(s)	336, 445, 648, 883
AluI	AGCT	4 cut(s)	336, 445, 648, 883
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	3 cut(s)	49, 699, 866
ApoI	RAATTY	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	2 cut(s)	700, 814
AsuHPI	GGTGA	3 cut(s)	13, 578, 665
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	2 cut(s)	51, 868
BanII	GRGCYC	1 cut(s)	885
BbsI	GAAGAC	2 cut(s)	357, 550
Bbv12I	GWGCWC	1 cut(s)	885
BccI	CCATC	1 cut(s)	624
BciT130I	CCWGG	2 cut(s)	28, 846
BclI	TGATCA	2 cut(s)	96, 469
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	2 cut(s)	141, 783
BglII	AGATCT	1 cut(s)	836
Bme1390I	CCNGG	2 cut(s)	28, 846
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	700, 814
BmiI	GGNNCC	1 cut(s)	889
BmrFI	CCNGG	2 cut(s)	28, 846
BpiI	GAAGAC	2 cut(s)	357, 550
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	133, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	28, 846
BseDI	CCNNGG	2 cut(s)	133, 844
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	3 cut(s)	113, 174, 756
BseNI	ACTGG	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	739
BshFI	GGCC	3 cut(s)	51, 701, 868
BsiHKAI	GWGCWC	1 cut(s)	885
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	51, 701, 868
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	18, 96, 469, 655, 836
BspANI	GGCC	3 cut(s)	51, 701, 868
BspCNI	CTCAG	3 cut(s)	114, 175, 755
BspLI	GGNNCC	1 cut(s)	889
BspQI	GCTCTTC	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	133, 844
BssMI	GATC	5 cut(s)	18, 96, 469, 655, 836
BssNI	GRCGYC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	28, 846
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	1 cut(s)	638
BstACI	GRCGYC	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	122, 183, 742, 770, 808
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	5 cut(s)	21, 99, 472, 658, 839
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	5 cut(s)	18, 96, 469, 655, 836
BstNI	CCWGG	2 cut(s)	28, 846
BstNSI	RCATGY	1 cut(s)	897
BstSCI	CCNGG	2 cut(s)	26, 844
BstV2I	GAAGAC	2 cut(s)	357, 550
BstX2I	RGATCY	1 cut(s)	836
BstYI	RGATCY	1 cut(s)	836
BsuRI	GGCC	3 cut(s)	51, 701, 868
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	700, 814
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	4 cut(s)	264, 539, 799, 894
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	5 cut(s)	122, 183, 742, 770, 808
DpnI	GATC	5 cut(s)	20, 98, 471, 657, 838
DpnII	GATC	5 cut(s)	18, 96, 469, 655, 836
DraI	TTTAAA	2 cut(s)	91, 159
EaeI	YGGCCR	2 cut(s)	49, 866
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Ecl136II	GAGCTC	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	885
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	26, 844
EcoRV	GATATC	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	4 cut(s)	267, 542, 802, 897
FatI	CATG	4 cut(s)	263, 538, 798, 893
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	2 cut(s)	96, 469
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	885
FspBI	CTAG	2 cut(s)	141, 783
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	51, 701, 868
HgaI	GACGC	1 cut(s)	524
Hin1I	GRCGYC	1 cut(s)	535
Hin1II	CATG	4 cut(s)	267, 542, 802, 897
HinfI	GANTC	4 cut(s)	13, 33, 431, 851
HphI	GGTGA	3 cut(s)	13, 578, 665
Hpy166II	GTNNAC	2 cut(s)	42, 569
Hpy188I	TCNGA	7 cut(s)	12, 18, 123, 217, 370, 745, 828
Hpy188III	TCNNGA	2 cut(s)	473, 908
Hpy8I	GTNNAC	2 cut(s)	42, 569
Hpy99I	CGWCG	2 cut(s)	61, 394
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4V	TGCA	3 cut(s)	597, 720, 732
HpyF3I	CTNAG	5 cut(s)	122, 183, 742, 770, 808
Hsp92I	GRCGYC	1 cut(s)	535
Hsp92II	CATG	4 cut(s)	267, 542, 802, 897
Ksp22I	TGATCA	2 cut(s)	96, 469
Kzo9I	GATC	5 cut(s)	18, 96, 469, 655, 836
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	1 cut(s)	893
MaeI	CTAG	2 cut(s)	141, 783
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	5 cut(s)	20, 98, 471, 657, 838
MboI	GATC	5 cut(s)	18, 96, 469, 655, 836
MboII	GAAGA	5 cut(s)	357, 394, 555, 655, 831
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	836
MhlI	GDGCHC	1 cut(s)	885
MlsI	TGGCCA	2 cut(s)	51, 868
MluCI	AATT	6 cut(s)	76, 101, 226, 707, 727, 876
MluNI	TGGCCA	2 cut(s)	51, 868
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	63, 582
MnlI	CCTC	6 cut(s)	34, 272, 408, 716, 805, 882
Mox20I	TGGCCA	2 cut(s)	51, 868
MscI	TGGCCA	2 cut(s)	51, 868
MseI	TTAA	5 cut(s)	90, 158, 173, 588, 759
Msp20I	TGGCCA	2 cut(s)	51, 868
MspR9I	CCNGG	2 cut(s)	28, 846
MunI	CAATTG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	2 cut(s)	28, 846
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	5 cut(s)	18, 96, 469, 655, 836
NlaIII	CATG	4 cut(s)	267, 542, 802, 897
NlaIV	GGNNCC	1 cut(s)	889
NmeAIII	GCCGAG	1 cut(s)	864
NspI	RCATGY	1 cut(s)	897
PciI	ACATGT	1 cut(s)	893
PciSI	GCTCTTC	1 cut(s)	638
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	13, 33, 851
PflMI	CCANNNNNTGG	1 cut(s)	709
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	893
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	26, 844
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	2 cut(s)	26, 844
PspN4I	GGNNCC	1 cut(s)	889
PspPI	GGNCC	2 cut(s)	700, 814
PsuI	RGATCY	1 cut(s)	836
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	885
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	5 cut(s)	90, 158, 173, 588, 759
Sau3AI	GATC	5 cut(s)	18, 96, 469, 655, 836
Sau96I	GGNCC	2 cut(s)	700, 814
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	28, 846
SduI	GDGCHC	1 cut(s)	885
SinI	GGWCC	1 cut(s)	814
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	6 cut(s)	76, 101, 226, 707, 727, 876
SspI	AATATT	1 cut(s)	861
SspMI	CTAG	2 cut(s)	141, 783
SstI	GAGCTC	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	26, 844
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	3 cut(s)	392, 456, 658
TasI	AATT	6 cut(s)	76, 101, 226, 707, 727, 876
TfiI	GAWTC	3 cut(s)	13, 33, 851
Tru1I	TTAA	5 cut(s)	90, 158, 173, 588, 759
Tru9I	TTAA	5 cut(s)	90, 158, 173, 588, 759
TspDTI	ATGAA	2 cut(s)	762, 787
TspGWI	ACGGA	1 cut(s)	518
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XspI	CTAG	2 cut(s)	141, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.