Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

5739868 .. 5740527

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTTCTTCAGAATCCGATCACCTCCAGGCGAATCAGGTACACAAACGGCCAGTCGTCGTCTCCTGAATGTTTCAATTTGTTGGAGTTTAAAATGATCAAATTAGGGAAGTCGTATTTTCTGAGATACATCCTTGGGTCTAGTTCTGTTTGTGGTTTAAAGAAAGTGATTTTAATGCCTGCTGAGATTGTTGATTGTGCTATTCTGCCATATGTGGTGGATAGCTTGGGTTATGTTTTTAGGATTAATGTGTCTTCAGAAGTGATGATGAAGATTTCGTCGAAAGTGATTGGTTTTGGTGGGAGGAAGCATTTGGTAGAGTCTTGTCGAGAGCTTTATGTGGTCGATATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTCGATTTTTCTTTATTTGTCAGTTGGCGTCGTGGAAGACACCAAAGATATCAGTTTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTGCAAGCTGGAATTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

182

Amino Acids

20.92

Weight (kDa)

8.94

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	71 - 182	6.6e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	76, 502, 527
AjnI	CCWGG	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	225, 334, 490, 537
AluI	AGCT	4 cut(s)	225, 334, 490, 537
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AseI	ATTAAT	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	13, 467
BbsI	GAAGAC	2 cut(s)	246, 439
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	28
BclI	TGATCA	2 cut(s)	96, 358
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	246, 439
BpmI	CTGGAG	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	113, 174
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	18, 96, 358
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	114, 175
BspQI	GCTCTTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	18, 96, 358
BssNI	GRCGYC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	180, 488
BstDEI	CTNAG	2 cut(s)	122, 183
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	21, 99, 361
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	18, 96, 358
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	246, 439
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	180, 488
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	6 cut(s)	51, 225, 334, 386, 490, 537
CviKI_1	RGCY	6 cut(s)	51, 225, 334, 386, 490, 537
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	122, 183
DpnI	GATC	3 cut(s)	20, 98, 360
DpnII	GATC	3 cut(s)	18, 96, 358
DraI	TTTAAA	2 cut(s)	91, 159
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	26
EcoRV	GATATC	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	66
FaiI	YATR	5 cut(s)	211, 213, 234, 339, 350
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	2 cut(s)	96, 358
FokI	GGATG	1 cut(s)	116
FspBI	CTAG	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	51
HgaI	GACGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	424
HinfI	GANTC	3 cut(s)	13, 33, 320
HphI	GGTGA	2 cut(s)	13, 467
Hpy166II	GTNNAC	2 cut(s)	42, 458
Hpy188I	TCNGA	4 cut(s)	12, 18, 123, 259
Hpy188III	TCNNGA	3 cut(s)	65, 329, 362
Hpy8I	GTNNAC	2 cut(s)	42, 458
Hpy99I	CGWCG	3 cut(s)	61, 283, 429
HpyAV	CCTTC	1 cut(s)	374
HpyCH4V	TGCA	1 cut(s)	486
HpyF3I	CTNAG	2 cut(s)	122, 183
Hsp92I	GRCGYC	1 cut(s)	424
Ksp22I	TGATCA	2 cut(s)	96, 358
Kzo9I	GATC	3 cut(s)	18, 96, 358
LguI	GCTCTTC	1 cut(s)	527
LpnPI	CCDG	8 cut(s)	13, 22, 40, 65, 78, 192, 372, 476
MaeI	CTAG	1 cut(s)	141
MalI	GATC	3 cut(s)	20, 98, 360
MboI	GATC	3 cut(s)	18, 96, 358
MboII	GAAGA	4 cut(s)	246, 283, 444, 544
MluCI	AATT	3 cut(s)	76, 101, 494
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	34, 297
MseI	TTAA	5 cut(s)	90, 158, 173, 246, 477
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	3 cut(s)	18, 96, 358
PciSI	GCTCTTC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	13, 33
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	90, 158, 173, 246, 477
Sau3AI	GATC	3 cut(s)	18, 96, 358
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	8 cut(s)	26, 41, 227, 336, 468, 483, 492, 539
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	76, 101, 494
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	133
TaqI	TCGA	4 cut(s)	281, 328, 345, 399
TasI	AATT	3 cut(s)	76, 101, 494
TfiI	GAWTC	2 cut(s)	13, 33
Tru1I	TTAA	5 cut(s)	90, 158, 173, 246, 477
Tru9I	TTAA	5 cut(s)	90, 158, 173, 246, 477
TspDTI	ATGAA	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	246
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.