Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

5737607 .. 5738551

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG073500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCTGCTGAGATTGTTGATTGTGCTATTCTCGTTATCTCTGATAAGGGAAATTTGGGTTTTGCTAAAAGTGGAGATGAGAAACTCACATGGTTTAGTAATGGAGGTTTTGTTTCTGATGATGTTATTGTTTATAAGGGTCAGCCATATGTGGTGGATAGCTTGGGTTATGTTTTTAGGATTGATGTGTCTTCAGAAGTGATGGTGAAGATTTCGTCGAAAGTGATTGGTTTTAGTGGGAGGAAGCATTTGGTAGAGTCTTGTGGAGAGCTTTATGTGGTTGATTTGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTAGAGTTTTCTTTATTTATCCGTTGGCGTCGTGGAAGACACCAAAGATATCAGTCTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATCGAGCTTTTTTCTTGGCTATGGATTGCTGTTTCTTTGTTTCGGCCCAAGAATTGGCTGGGTGCAGAGGGAATTGCATTTACTTCTCAGATAAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAATTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGGGATCTTCCCCAGGCGATTCCCAGATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTTGTATTCTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

246

Amino Acids

27.76

Weight (kDa)

5.05

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	6 - 195	4.1e-32	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	535
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	2 cut(s)	52, 619
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	2 cut(s)	439, 464
AjnI	CCWGG	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	5 cut(s)	162, 271, 474, 488, 709
AluI	AGCT	5 cut(s)	162, 271, 474, 488, 709
Alw21I	GWGCWC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	2 cut(s)	525, 692
ApoI	RAATTY	2 cut(s)	52, 619
AspS9I	GGNCC	2 cut(s)	526, 640
AsuHPI	GGTGA	3 cut(s)	217, 404, 491
AvaII	GGWCC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	711
BbsI	GAAGAC	2 cut(s)	183, 376
Bbv12I	GWGCWC	1 cut(s)	711
BccI	CCATC	2 cut(s)	196, 450
BciT130I	CCWGG	1 cut(s)	672
BclI	TGATCA	1 cut(s)	295
BfaI	CTAG	1 cut(s)	609
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	526, 640
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	1 cut(s)	672
BpiI	GAAGAC	2 cut(s)	183, 376
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpuEI	CTTGAG	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	582
BseYI	CCCAGC	1 cut(s)	539
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	2 cut(s)	527, 694
BsiHKAI	GWGCWC	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	527, 694
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	295, 481, 662
BspANI	GGCC	2 cut(s)	527, 694
BspCNI	CTCAG	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	715
BspPI	GGATC	1 cut(s)	670
BspQI	GCTCTTC	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	3 cut(s)	295, 481, 662
BssNI	GRCGYC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	9, 568, 596, 634
BstKTI	GATC	3 cut(s)	298, 484, 665
BstMBI	GATC	3 cut(s)	295, 481, 662
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	670
BstV2I	GAAGAC	2 cut(s)	183, 376
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	527, 694
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	526, 640
CseI	GACGC	1 cut(s)	350
CviAII	CATG	3 cut(s)	90, 625, 720
DdeI	CTNAG	4 cut(s)	9, 568, 596, 634
DpnI	GATC	3 cut(s)	297, 483, 664
DpnII	GATC	3 cut(s)	295, 481, 662
EaeI	YGGCCR	1 cut(s)	692
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	711
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	711
FaeI	CATG	3 cut(s)	93, 628, 723
FatI	CATG	3 cut(s)	89, 624, 719
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	711
FspBI	CTAG	1 cut(s)	609
GsaI	CCCAGC	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	527, 694
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	93, 628, 723
HinfI	GANTC	2 cut(s)	257, 677
HphI	GGTGA	3 cut(s)	217, 404, 491
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	5 cut(s)	43, 118, 196, 571, 654
Hpy188III	TCNNGA	2 cut(s)	299, 734
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	2 cut(s)	220, 366
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	3 cut(s)	423, 546, 558
HpyF3I	CTNAG	4 cut(s)	9, 568, 596, 634
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	3 cut(s)	93, 628, 723
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 481, 662
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	719
LpnPI	CCDG	9 cut(s)	18, 309, 375, 525, 627, 657, 684, 695, 719
MaeI	CTAG	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	3 cut(s)	297, 483, 664
MboI	GATC	3 cut(s)	295, 481, 662
MboII	GAAGA	5 cut(s)	183, 220, 381, 481, 657
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	1 cut(s)	694
MluCI	AATT	5 cut(s)	52, 533, 553, 619, 702
MluNI	TGGCCA	1 cut(s)	694
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	98, 234, 542, 631, 708
Mox20I	TGGCCA	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	694
MseI	TTAA	2 cut(s)	414, 585
Msp20I	TGGCCA	1 cut(s)	694
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	3 cut(s)	295, 481, 662
NlaIII	CATG	3 cut(s)	93, 628, 723
NlaIV	GGNNCC	1 cut(s)	715
NmeAIII	GCCGAG	1 cut(s)	690
NspI	RCATGY	1 cut(s)	723
PciI	ACATGT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	464
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	677
PflMI	CCANNNNNTGG	1 cut(s)	535
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	711
Psp6I	CCWGG	1 cut(s)	670
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	2 cut(s)	526, 640
PsuI	RGATCY	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	414, 585
Sau3AI	GATC	3 cut(s)	295, 481, 662
Sau96I	GGNCC	2 cut(s)	526, 640
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	711
SetI	ASST	9 cut(s)	109, 164, 273, 405, 420, 476, 490, 700, 711
SinI	GGWCC	1 cut(s)	640
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	52, 533, 553, 619, 702
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	670
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	218, 484
TasI	AATT	5 cut(s)	52, 533, 553, 619, 702
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	2 cut(s)	414, 585
Tru9I	TTAA	2 cut(s)	414, 585
TspDTI	ATGAA	1 cut(s)	613
TspGWI	ACGGA	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	2 cut(s)	52, 619
XceI	RCATGY	1 cut(s)	723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.