Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

15051583 .. 15052557

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAAGGTTCCCAGAGCACAATGTTGAGAATGAAAATGTTAGTGTTTTTGGCCCTAATTTTCAAGCTCCTCCTCATCGTTTCGCCGCTTCTGTTGACGGCGAGGCTGTTGATTTTAAAGTTTATAGGCTGGATCAAGAATGGGGTAGGTGGGTTGATGTGAAGAACTTGGGAGATCAAGTGTTTATTTTGAGCAATGATGGGTCTTTCGCCGTCTCCACCAGAGACTTTGGTAGAGTGAAGGGAAATTGCATTTTATTCACTGATCAAAAGCTTCCTCATTTACACGGAATTGGGGGATCAAAAAGGTGTAACACTCGCGTGTTCATGCTAGAGAGTGGCATCATTCGGGACGGACATGCTTTGTCCTGCTTTAACAAAATGCTCCATCCACCATCCAGTTGGCTCCGCCCTCTTGATTTCCGTCGGCATCGGCTTGGATACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

8.43

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	87, 409
AclWI	GGATC	2 cut(s)	141, 307
AgsI	TTSAA	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	68, 274
AluI	AGCT	2 cut(s)	68, 274
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	219, 220
AlwI	GGATC	2 cut(s)	141, 307
AoxI	GGCC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	3 cut(s)	194, 396, 403
BceAI	ACGGC	2 cut(s)	115, 197
BciVI	GTATCC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	219, 220
BfaI	CTAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	11, 407
BmsI	GCATC	2 cut(s)	351, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	388, 395
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	60, 63
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	2 cut(s)	219, 220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	133, 175, 265, 299
BspACI	CCGC	2 cut(s)	87, 409
BspANI	GGCC	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	11, 407
BspPI	GGATC	2 cut(s)	141, 307
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	4 cut(s)	133, 175, 265, 299
BstF5I	GGATG	2 cut(s)	388, 395
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	4 cut(s)	136, 178, 268, 302
BstMAI	GTCTC	2 cut(s)	219, 220
BstMBI	GATC	4 cut(s)	133, 175, 265, 299
BstNSI	RCATGY	1 cut(s)	362
BstUI	CGCG	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	388, 395
BtsIMutI	CAGTG	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	2 cut(s)	328, 359
CviJI	RGCY	7 cut(s)	54, 68, 107, 130, 274, 406, 436
CviKI_1	RGCY	7 cut(s)	54, 68, 107, 130, 274, 406, 436
DpnI	GATC	4 cut(s)	135, 177, 267, 301
DpnII	GATC	4 cut(s)	133, 175, 265, 299
DraI	TTTAAA	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	2 cut(s)	331, 362
FaiI	YATR	3 cut(s)	126, 329, 360
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	327, 358
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	375, 382
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	331, 362
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	137, 350, 416
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	331, 362
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	133, 175, 265, 299
LmnI	GCTCC	3 cut(s)	73, 390, 411
LpnPI	CCDG	5 cut(s)	27, 116, 235, 382, 412
LweI	GCATC	2 cut(s)	351, 439
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	4 cut(s)	135, 177, 267, 301
MboI	GATC	4 cut(s)	133, 175, 265, 299
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	3 cut(s)	58, 247, 291
MnlI	CCTC	5 cut(s)	81, 84, 97, 288, 423
MseI	TTAA	2 cut(s)	117, 375
MslI	CAYNNNNRTG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	321
NdeII	GATC	4 cut(s)	133, 175, 265, 299
NlaIII	CATG	2 cut(s)	331, 362
NlaIV	GGNNCC	2 cut(s)	11, 407
NspI	RCATGY	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	11, 407
PspPI	GGNCC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	117, 375
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	133, 175, 265, 299
Sau96I	GGNCC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	11, 70, 152, 276, 311
SfaNI	GCATC	2 cut(s)	351, 439
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	58, 247, 291
SsiI	CCGC	2 cut(s)	87, 409
SspMI	CTAG	1 cut(s)	332
TasI	AATT	3 cut(s)	58, 247, 291
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	117, 375
Tru9I	TTAA	2 cut(s)	117, 375
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	48, 316
TspGWI	ACGGA	3 cut(s)	303, 369, 413
TspRI	CASTG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	399
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.