Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

12248227 .. 12251432

Gene Structure 3206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG138900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTGTCTGCTTCATCCAATCACGAACTGGCAGCTCAGGTTATCTATAACTCAGGCTATAAAAGAACTGCAGTGGTCACGGCCCCAATTGTATTCTCTGAAATATGCCTATACCAAAATTGATGTTACTTATGTGAACAAAGTGGTGATTTTACCTGTTGATCATTTGAGTTTGGGGGAGGATTTTGTGGTGTTTATGATTTACAGAGGAGGGCATTTGGCTGTTATGAGGTATGGGGATGAGAGTTGGATTCGTGTGGATGAAAACAACTCTCATTATGATCTCATTGTGCACAAGGGTCTTAAAATTGGAGAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCCGTGACAGCACCTCTCAAAATTGAGAAAGACATCCAGAATCTATTGGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

152

Amino Acids

17.54

Weight (kDa)

8.59

Isoelectric Point (pI)

27.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	1 - 100	9.8e-08	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	326
Alw44I	GTGCAC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	80
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	95
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
Bpu10I	CCTNAGC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	32
BseGI	GGATG	4 cut(s)	13, 244, 265, 432
BseMII	CTCAG	2 cut(s)	49, 65
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	160, 280
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	48, 64
BspLI	GGNNCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	160, 280
BstDEI	CTNAG	2 cut(s)	35, 51
BstF5I	GGATG	4 cut(s)	13, 244, 265, 432
BstKTI	GATC	2 cut(s)	163, 283
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	160, 280
BstSFI	CTRYAG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	4 cut(s)	13, 244, 265, 432
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	81
CviJI	RGCY	4 cut(s)	34, 56, 82, 221
CviKI_1	RGCY	4 cut(s)	34, 56, 82, 221
DdeI	CTNAG	2 cut(s)	35, 51
DpnI	GATC	2 cut(s)	162, 282
DpnII	GATC	2 cut(s)	160, 280
Eco31I	GGTCTC	1 cut(s)	326
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	251, 272, 419
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	250, 439, 449
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	136, 292, 367
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	22, 436, 456
Hpy8I	GTNNAC	3 cut(s)	136, 292, 367
HpyAV	CCTTC	3 cut(s)	308, 368, 373
HpyCH4V	TGCA	2 cut(s)	70, 292
HpyF3I	CTNAG	2 cut(s)	35, 51
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	160, 280
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	5 cut(s)	13, 22, 38, 168, 449
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	345
MaeIII	GTNAC	3 cut(s)	75, 124, 403
MalI	GATC	2 cut(s)	162, 282
MboI	GATC	2 cut(s)	160, 280
MboII	GAAGA	1 cut(s)	444
MfeI	CAATTG	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	4 cut(s)	86, 117, 306, 420
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	5 cut(s)	172, 200, 203, 222, 423
MseI	TTAA	1 cut(s)	303
MunI	CAATTG	1 cut(s)	86
NdeII	GATC	2 cut(s)	160, 280
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	75, 403
PfeI	GAWTC	3 cut(s)	250, 439, 449
PkrI	GCNGC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	160, 280
Sau96I	GGNCC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	7 cut(s)	36, 41, 157, 233, 319, 384, 415
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	86, 117, 306, 420
TasI	AATT	4 cut(s)	86, 117, 306, 420
TfiI	GAWTC	3 cut(s)	250, 439, 449
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	2 cut(s)	75, 403
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	75, 403
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.