Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

9968444 .. 9977837

Gene Structure 9394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGGGCGCAACTTGGTTGCTGCTCCAGAAAGCTCGGGTCCAATTGGCAATAGCAGCAAACCCAACTATTTGGCTGTCACTCATGCAGGAGATCGATGATAGTCACAGCAATGCCATGGCTAGTTCACCATATTTATTTTCAAAGTCACTGATCACCGACGAAGGTTCAGATAAGTCGCTACCGTTCTTGGTCAAGTTCGAGGAGGCTAATTGCGGCGAAATGCGTCTGCTTCATCCAATCACGAACTGGCAGCTCAGGTTATCTATAACTCAGGCTATAAAAGAACTGCAGTGGTCACGGCCCCAATTGTATTCTCTGAAATATGCCTATACCAAAATTGATGTTACTTATGTGAACAAAGTGGTGGTTTTGCCTGTTGATCATTTGAGTTTGGGGGAGGATTTTGTGGTGTTTATGATTTACAGAGGAAGGCCTTTGGCTGTTATGAGGTATGGGGATGAGAGTTGGATTCGTGTGGACGAAAACAACTCTCATTATGATCTTATTGTGCACAAGGGTCAGTGCTTTGTTGTTACAGCCCAAGCTCAATGTGAGTGCTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

189

Amino Acids

21.71

Weight (kDa)

6.19

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	63 - 184	2.1e-11	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	144
AluBI	AGCT	3 cut(s)	35, 256, 548
AluI	AGCT	3 cut(s)	35, 256, 548
Alw21I	GWGCWC	1 cut(s)	516
Alw44I	GTGCAC	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	302, 434
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	3 cut(s)	22, 56, 253
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	40, 303
AsuHPI	GGTGA	2 cut(s)	120, 148
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	9, 68, 265
BceAI	ACGGC	1 cut(s)	317
BclI	TGATCA	2 cut(s)	153, 382
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	290
BisI	GCNGC	4 cut(s)	23, 57, 217, 254
BlsI	GCNGC	4 cut(s)	24, 58, 218, 255
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	40, 303
BmiI	GGNNCC	2 cut(s)	41, 305
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	235, 466
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	271, 287
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	9, 68, 265
BshFI	GGCC	2 cut(s)	304, 436
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	36
BsnI	GGCC	2 cut(s)	304, 436
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	4 cut(s)	93, 153, 382, 502
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	304, 436
BspCNI	CTCAG	2 cut(s)	270, 286
BspDI	ATCGAT	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	41, 305
BspMAI	CTGCAG	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	93, 153, 382, 502
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	257, 273
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	235, 466
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	4 cut(s)	96, 156, 385, 505
BstMBI	GATC	4 cut(s)	93, 153, 382, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	9, 68, 265
BstXI	CCANNNNNNTGG	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	304, 436
BsuTUI	ATCGAT	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	235, 466
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	149, 299, 530
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	40, 303
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	85, 118
DdeI	CTNAG	2 cut(s)	257, 273
DpnI	GATC	4 cut(s)	95, 155, 384, 504
DpnII	GATC	4 cut(s)	93, 153, 382, 502
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	88, 121
FatI	CATG	2 cut(s)	84, 117
FbaI	TGATCA	2 cut(s)	153, 382
Fnu4HI	GCNGC	4 cut(s)	23, 57, 217, 254
FokI	GGATG	2 cut(s)	222, 473
Fsp4HI	GCNGC	4 cut(s)	23, 57, 217, 254
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	4 cut(s)	23, 57, 217, 254
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	304, 436
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	88, 121
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	472
HphI	GGTGA	2 cut(s)	120, 148
Hpy166II	GTNNAC	4 cut(s)	128, 358, 481, 514
Hpy188I	TCNGA	2 cut(s)	172, 321
Hpy188III	TCNNGA	2 cut(s)	28, 244
Hpy8I	GTNNAC	4 cut(s)	128, 358, 481, 514
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	158, 426
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	88, 292, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	257, 273
Hsp92II	CATG	2 cut(s)	88, 121
HspAI	GCGC	1 cut(s)	9
Ksp22I	TGATCA	2 cut(s)	153, 382
Kzo9I	GATC	4 cut(s)	93, 153, 382, 502
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	6 cut(s)	41, 74, 235, 244, 260, 390
Lsp1109I	GCAGC	3 cut(s)	9, 68, 265
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	6 cut(s)	78, 104, 147, 297, 346, 535
MalI	GATC	4 cut(s)	95, 155, 384, 504
MboI	GATC	4 cut(s)	93, 153, 382, 502
MfeI	CAATTG	2 cut(s)	44, 308
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	4 cut(s)	44, 211, 308, 339
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	5 cut(s)	196, 199, 394, 422, 444
MslI	CAYNNNNRTG	1 cut(s)	111
MunI	CAATTG	2 cut(s)	44, 308
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	93, 153, 382, 502
NlaIII	CATG	2 cut(s)	88, 121
NlaIV	GGNNCC	2 cut(s)	41, 305
NmuCI	GTSAC	4 cut(s)	78, 104, 147, 297
PceI	AGGCCT	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	24, 58, 218, 255
PspN4I	GGNNCC	2 cut(s)	41, 305
PspPI	GGNCC	2 cut(s)	40, 303
PstI	CTGCAG	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	111
SatI	GCNGC	4 cut(s)	23, 57, 217, 254
Sau3AI	GATC	4 cut(s)	93, 153, 382, 502
Sau96I	GGNCC	2 cut(s)	40, 303
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	6 cut(s)	37, 169, 258, 263, 455, 550
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	44, 211, 308, 339
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	96, 201
TasI	AATT	4 cut(s)	44, 211, 308, 339
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	472
TscAI	CASTG	3 cut(s)	156, 299, 530
TseFI	GTSAC	4 cut(s)	78, 104, 147, 297
TseI	GCWGC	3 cut(s)	22, 56, 253
Tsp45I	GTSAC	4 cut(s)	78, 104, 147, 297
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	3 cut(s)	156, 299, 530
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.