Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

26191463 .. 26191996

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGAAAGTTGACTCGTGTGGATGAACAGAATGCTTACTATGATGATATCATTGTGTATAAGGGTCGGTGCTATGTTGTTGATAAGTGGGGAACAATTTCATGGGTTAATTCGGCTTTGCGGGTGATTTCGCTTTTCGCCTGCTATGTGGGTTTGGCGGGCGGAAGTATTTGGTGGAAGGTTTGTGATGATCTTTATGTGGTTGATCAGTTCTTTGAAAAGGTGACTGCGAGCAATATAGTAGGGACCCCATTTCTGGATAATGAGTTACTTTGGTGGCATCATCATAAAATGCGTTACGATGCGAAACAATTGATTTCAAGGGTTTATAAGCTGGATCAAGAATGGGGTAAATGGGTTGATGTGAAAGACATGGGAGATGACATCTTTATTTTAAGCAATGATGGATCTTTTCTCTGTCTCCGCCAAAGAGTTTGCTGGAGTAAAGGGAAATTGCATTTTCTTTACTCAAAGTGCGTAAACTACTGGAAGGTTGTTCCCTTGTGTGTTCAATTTAGAGGATGGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

177

Amino Acids

21.02

Weight (kDa)

8.62

Isoelectric Point (pI)

19.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	3 - 143	1.9e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AciI	CCGC	4 cut(s)	121, 158, 162, 424
AclWI	GGATC	2 cut(s)	345, 415
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	218, 321, 512
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	345, 415
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	136, 235
AvaII	GGWCC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	15
BccI	CCATC	2 cut(s)	398, 516
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	247, 248
BmsI	GCATC	2 cut(s)	289, 292
BpmI	CTGGAG	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	28, 527
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	190, 205, 337, 407
BspACI	CCGC	4 cut(s)	121, 158, 162, 424
BspLI	GGNNCC	2 cut(s)	247, 248
BspPI	GGATC	2 cut(s)	345, 415
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	491
BssMI	GATC	4 cut(s)	190, 205, 337, 407
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	142, 160, 232
BstF5I	GGATG	2 cut(s)	28, 527
BstKTI	GATC	4 cut(s)	193, 208, 340, 410
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	4 cut(s)	190, 205, 337, 407
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	28, 527
Cac8I	GCNNGC	3 cut(s)	142, 160, 232
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	2 cut(s)	102, 373
CviJI	RGCY	2 cut(s)	116, 334
CviKI_1	RGCY	2 cut(s)	116, 334
DpnI	GATC	4 cut(s)	192, 207, 339, 409
DpnII	GATC	4 cut(s)	190, 205, 337, 407
EciI	GGCGGA	2 cut(s)	177, 413
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	49
FaeI	CATG	2 cut(s)	105, 376
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	101, 372
FauI	CCCGC	2 cut(s)	114, 151
FbaI	TGATCA	1 cut(s)	205
FokI	GGATG	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	460
Hin1II	CATG	2 cut(s)	105, 376
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	136, 235
Hpy166II	GTNNAC	2 cut(s)	12, 481
Hpy188III	TCNNGA	2 cut(s)	257, 341
Hpy8I	GTNNAC	2 cut(s)	12, 481
HpyAV	CCTTC	2 cut(s)	172, 484
HpyCH4V	TGCA	1 cut(s)	457
Hsp92II	CATG	2 cut(s)	105, 376
KflI	GGGWCCC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	190, 205, 337, 407
LpnPI	CCDG	5 cut(s)	154, 242, 320, 424, 472
LweI	GCATC	2 cut(s)	289, 292
MaeIII	GTNAC	3 cut(s)	223, 267, 296
MalI	GATC	4 cut(s)	192, 207, 339, 409
MboI	GATC	4 cut(s)	190, 205, 337, 407
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	1 cut(s)	407
MluCI	AATT	5 cut(s)	96, 109, 311, 452, 512
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	108, 395
MunI	CAATTG	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	37
NdeII	GATC	4 cut(s)	190, 205, 337, 407
NlaIII	CATG	2 cut(s)	105, 376
NlaIV	GGNNCC	2 cut(s)	247, 248
NmuCI	GTSAC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	247, 248
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	108, 395
Sau3AI	GATC	4 cut(s)	190, 205, 337, 407
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	7
SetI	ASST	4 cut(s)	183, 225, 336, 495
SfaNI	GCATC	2 cut(s)	289, 292
SinI	GGWCC	1 cut(s)	246
Sse9I	AATT	5 cut(s)	96, 109, 311, 452, 512
SsiI	CCGC	4 cut(s)	121, 158, 162, 424
TasI	AATT	5 cut(s)	96, 109, 311, 452, 512
Tru1I	TTAA	2 cut(s)	108, 395
Tru9I	TTAA	2 cut(s)	108, 395
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	39, 90
VpaK11BI	GGWCC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.