FvH4_1g10880

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000246
Physical Location & Seq
Reverse (-)
5937588 .. 5939683
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10880.t1

Sequence Viewer

Length: 1167 bp
ATGGACATCACTGTCGACTGGTCCAATCTTCCCCTCGAACTCTGGCCACTCATCGGAGAAAAACTCAAACTCCGCATCGAGTTTCTCCGCTTCCGCAGCGTCTGCAATCCATGGCGTTCATATTTACCTCCCTTCCACCCTTCAACTCCTCCACCAAAGTTCCCTCTCCCTTCCTCCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTTCCTCCTCCGACCCCCCGCCACGTCATCACCGCCTTCCTCCGGTGGTTGGCTGGTCAAGGTCGAAGAGTGCGACAGAATGCTTCTAAGGAATCCCATCACCTCCCGGCGCATCAGGTCGGAGTGTTTCAATTTGTTGGAGTTTGATATGATCGAGTTGGGGAAGTCGTACTTTCTTAGGTACATACATGGCTCTGGTTCGGCTTGTGGGTTGAAGAAAGTGATTGTGATGCCTTCTGAGATTGGTGAATGTGCGGTTCTGGTTATATCCGACAAAGGAAACTTTGGTTATGCTAGAAGTGGAGATCAGAAGCTCAGATGGTTTGGTCATGAAGGTTCTGTTATTGATGATGTTGGTTTTTATAAGGGTCAGTCATATGTGGTGGATAGCTTGGGTTGTGTGTTTAGGATTACTATGTCTTCACATGAGATGGTGAAGATTTCGTCCAAGGTGGTTGGATTAGGTGGGAGGAAGCATTTGGTGGAGAGTTGTGGAGAGCTTTATGTGGTGGATAGATATTATGATCAAGAACAAAGTAAGCAAGAAGGGAATGGTGTTGAGTTAGATTTTAGGATCTTTGGTCGTCGTCGTGGGAGATACCGAAGATTTCGGAGTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTACAAGCTGGAATGGGGTGATGGGGAGTTGAGCAGATGGGTTGAAGTGAACAGCTTGGATGATCAAGTGTTCTTCTTGGCTAATGACTGCTCTTTCGCTGTTTCGGCGCAAGAGTTAGCTGGGTACAAAGGGAATTGCATTTACTTTACTGATGAAAATGATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCGGAGAGCTTTGTGTTCGACTTGGAGGACCGTAGCATTCAGAAGCTGGAATCTTCCCAGATATTTTGGCCACCTCCAATTGAGTTTGGCTGCACATCGTCTTCTCTGGATTGA

Protein Analysis

389

Amino Acids

44.16

Weight (kDa)

5.89

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 74 - 342 5.5e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AasI GACNNNNNNGTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 15
AciI CCGC 6 cut(s) 73, 88, 94, 234, 248, 470
AclWI GGATC 1 cut(s) 797
AcoI YGGCCR 2 cut(s) 44, 1121
AfaI GTAC 3 cut(s) 386, 398, 986
AfiI CCNNNNNNNGG 3 cut(s) 53, 257, 264
AgsI TTSAA 4 cut(s) 144, 346, 430, 905
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 8 cut(s) 529, 606, 715, 868, 915, 980, 1062, 1099
AluI AGCT 8 cut(s) 529, 606, 715, 868, 915, 980, 1062, 1099
AlwI GGATC 1 cut(s) 797
AlwNI CAGNNNCTG 2 cut(s) 102, 1099
AoxI GGCC 2 cut(s) 44, 1121
ApeKI GCWGC 2 cut(s) 96, 1143
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
AspLEI GCGC 2 cut(s) 327, 970
AspS9I GGNCC 3 cut(s) 21, 185, 1081
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 6 cut(s) 237, 307, 473, 661, 845, 890
AvaII GGWCC 3 cut(s) 21, 185, 1081
BalI TGGCCA 2 cut(s) 46, 1123
BbsI GAAGAC 3 cut(s) 208, 627, 1146
BbvI GCAGC 2 cut(s) 108, 1130
BccI CCATC 6 cut(s) 176, 320, 528, 640, 875, 891
BclI TGATCA 2 cut(s) 739, 922
BcnI CCSGG 1 cut(s) 322
BfaI CTAG 2 cut(s) 510, 1050
BisI GCNGC 2 cut(s) 97, 1144
BlsI GCNGC 2 cut(s) 98, 1145
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 3 cut(s) 21, 185, 1081
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 21, 185, 1081
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 84, 336, 435
BpiI GAAGAC 3 cut(s) 208, 627, 1146
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 1026
BsaJI CCNNGG 2 cut(s) 110, 663
BsaWI WCCGGW 2 cut(s) 257, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 257, 264
Bse1I ACTGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 1026
BseDI CCNNGG 2 cut(s) 110, 663
BseGI GGATG 1 cut(s) 925
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 3 cut(s) 53, 257, 264
BseMII CTCAG 2 cut(s) 444, 544
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 3 cut(s) 138, 166, 212
BseXI GCAGC 2 cut(s) 108, 1130
BseYI CCCAGC 1 cut(s) 980
BsgI GTGCAG 1 cut(s) 1129
BshFI GGCC 2 cut(s) 46, 1123
BsiSI CCGG 3 cut(s) 258, 322, 1055
BslI CCNNNNNNNGG 3 cut(s) 53, 257, 264
BsmI GAATGC 2 cut(s) 300, 1089
BsnI GGCC 2 cut(s) 46, 1123
Bsp143I GATC 5 cut(s) 366, 520, 739, 789, 922
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 6 cut(s) 73, 88, 94, 234, 248, 470
BspANI GGCC 2 cut(s) 46, 1123
BspCNI CTCAG 2 cut(s) 445, 543
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 797
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 110, 663
BssMI GATC 5 cut(s) 366, 520, 739, 789, 922
BssT1I CCWWGG 2 cut(s) 110, 663
Bst4CI ACNGT 3 cut(s) 13, 214, 1085
Bst6I CTCTTC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDEI CTNAG 5 cut(s) 302, 392, 453, 530, 1037
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 925
BstHHI GCGC 2 cut(s) 327, 970
BstKTI GATC 5 cut(s) 369, 523, 742, 792, 925
BstMBI GATC 5 cut(s) 366, 520, 739, 789, 922
BstMWI GCNNNNNNNGC 3 cut(s) 96, 102, 965
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 108, 1130
BstV2I GAAGAC 3 cut(s) 208, 627, 1146
BstX2I RGATCY 1 cut(s) 789
BstYI RGATCY 1 cut(s) 789
BsuRI GGCC 2 cut(s) 46, 1123
BtgI CCRYGG 1 cut(s) 110
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 925
BtsIMutI CAGTG 1 cut(s) 9
CaiI CAGNNNCTG 2 cut(s) 102, 1099
CciI TCATGA 1 cut(s) 544
CfoI GCGC 2 cut(s) 327, 970
Cfr13I GGNCC 3 cut(s) 21, 185, 1081
CseI GACGC 1 cut(s) 88
Csp6I GTAC 3 cut(s) 385, 397, 985
CviAII CATG 4 cut(s) 111, 404, 545, 641
CviQI GTAC 3 cut(s) 385, 397, 985
DdeI CTNAG 5 cut(s) 302, 392, 453, 530, 1037
DpnI GATC 5 cut(s) 368, 522, 741, 791, 924
DpnII GATC 5 cut(s) 366, 520, 739, 789, 922
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 44, 1121
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 2 cut(s) 110, 663
Eco47I GGWCC 3 cut(s) 21, 185, 1081
EcoT14I CCWWGG 2 cut(s) 110, 663
ErhI CCWWGG 2 cut(s) 110, 663
FaeI CATG 4 cut(s) 114, 407, 548, 644
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 4 cut(s) 110, 403, 544, 640
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 2 cut(s) 739, 922
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 97, 1144
FokI GGATG 1 cut(s) 932
Fsp4HI GCNGC 2 cut(s) 97, 1144
FspBI CTAG 2 cut(s) 510, 1050
GlaI GCGC 2 cut(s) 326, 969
GluI GCNGC 2 cut(s) 97, 1144
GsaI CCCAGC 1 cut(s) 984
HaeIII GGCC 2 cut(s) 46, 1123
HapII CCGG 3 cut(s) 258, 322, 1055
HgaI GACGC 1 cut(s) 88
HhaI GCGC 2 cut(s) 327, 970
Hin1II CATG 4 cut(s) 114, 407, 548, 644
Hin6I GCGC 2 cut(s) 325, 968
HinP1I GCGC 2 cut(s) 325, 968
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 307, 1103
HpaII CCGG 3 cut(s) 258, 322, 1055
HphI GGTGA 6 cut(s) 237, 307, 473, 661, 845, 890
Hpy166II GTNNAC 4 cut(s) 16, 836, 862, 910
Hpy188III TCNNGA 3 cut(s) 545, 743, 1160
Hpy8I GTNNAC 4 cut(s) 16, 836, 862, 910
Hpy99I CGWCG 2 cut(s) 804, 807
HpyAV CCTTC 8 cut(s) 142, 150, 180, 205, 261, 459, 542, 755
HpyCH4III ACNGT 3 cut(s) 13, 214, 1085
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 105, 999, 1146
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 102, 965
HpyF3I CTNAG 5 cut(s) 302, 392, 453, 530, 1037
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 4 cut(s) 114, 407, 548, 644
HspAI GCGC 2 cut(s) 325, 968
Ksp22I TGATCA 2 cut(s) 739, 922
Kzo9I GATC 5 cut(s) 366, 520, 739, 789, 922
Lsp1109I GCAGC 2 cut(s) 108, 1130
LweI GCATC 3 cut(s) 84, 336, 435
MaeI CTAG 2 cut(s) 510, 1050
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 1045
MalI GATC 5 cut(s) 368, 522, 741, 791, 924
MboI GATC 5 cut(s) 366, 520, 739, 789, 922
MfeI CAATTG 1 cut(s) 1131
MflI RGATCY 1 cut(s) 789
MlsI TGGCCA 2 cut(s) 46, 1123
MluCI AATT 3 cut(s) 346, 994, 1131
MluNI TGGCCA 2 cut(s) 46, 1123
MmeI TCCRAC 5 cut(s) 250, 315, 333, 510, 652
Mox20I TGGCCA 2 cut(s) 46, 1123
MscI TGGCCA 2 cut(s) 46, 1123
MseI TTAA 2 cut(s) 855, 1026
Msp20I TGGCCA 2 cut(s) 46, 1123
MspI CCGG 3 cut(s) 258, 322, 1055
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 1131
Mva1269I GAATGC 2 cut(s) 300, 1089
MwoI GCNNNNNNNGC 3 cut(s) 96, 102, 965
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 592
NdeII GATC 5 cut(s) 366, 520, 739, 789, 922
NlaIII CATG 4 cut(s) 114, 407, 548, 644
NlaIV GGNNCC 1 cut(s) 187
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 2 cut(s) 300, 1089
PfeI GAWTC 2 cut(s) 307, 1103
PkrI GCNGC 2 cut(s) 98, 1145
PsiI TTATAA 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 980
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 21, 185, 1081
PstNI CAGNNNCTG 2 cut(s) 102, 1099
PsuI RGATCY 1 cut(s) 789
RsaI GTAC 3 cut(s) 386, 398, 986
RsaNI GTAC 3 cut(s) 385, 397, 985
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 855, 1026
SatI GCNGC 2 cut(s) 97, 1144
Sau3AI GATC 5 cut(s) 366, 520, 739, 789, 922
Sau96I GGNCC 3 cut(s) 21, 185, 1081
ScrFI CCNGG 1 cut(s) 322
SfaNI GCATC 3 cut(s) 84, 336, 435
SinI GGWCC 3 cut(s) 21, 185, 1081
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 3 cut(s) 346, 994, 1131
SsiI CCGC 6 cut(s) 73, 88, 94, 234, 248, 470
SspMI CTAG 2 cut(s) 510, 1050
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 110, 663
TaaI ACNGT 3 cut(s) 13, 214, 1085
TaiI ACGT 1 cut(s) 242
TaqI TCGA 6 cut(s) 15, 36, 78, 279, 369, 1071
TasI AATT 3 cut(s) 346, 994, 1131
TfiI GAWTC 2 cut(s) 307, 1103
Tru1I TTAA 2 cut(s) 855, 1026
Tru9I TTAA 2 cut(s) 855, 1026
TscAI CASTG 1 cut(s) 16
TseI GCWGC 2 cut(s) 96, 1143
TspDTI ATGAA 3 cut(s) 108, 561, 1029
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 3 cut(s) 21, 185, 1081
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 510, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.