FvH4_1g10830

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000246
Physical Location & Seq
Forward (+)
5912346 .. 5913341
996 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10830.t1

Sequence Viewer

Length: 996 bp
ATGGAGTCACTCATGGCTGAGGAGGACAGTGGCTCTTCATCGCCATCAAACAAGCCATGGTTGGTGAAGTTTGAGGAGGACCCAAGTTCTGGTACAATGCGTTTACTTGATCCGGTGACTAGGTCTCCCCTCAGATATTCTCCTAACGCTACTTTGAAGCAACTAAATTTAATGGAATATCGGATTGTAGAGCTACACAAGTCGTATGGACTAAAATTTGGCGAGAACAATGTCACTATTAATTCTTTGCACAAATTGGTACTCCTCCCTCGTAACCATTTAAGCTTTGGCAATGTGTATGCGGTTTTTATGATCTATAACGAAGGCAAACTGGGTTTCATGAGATTTGGAGATGAGGAGCTTACCTATGTGGATGTGGAAAACTCTTACTATGATGATATTATTGTGTACAAGGGTGAATGCTATGTAGTTGATAAGTGGGGAACAGTTTCTTGTATCAATTCAGCTCTGGAGGTGATTCAGGTTTCGCCTCCATTGTCGTGTGGCTTTGGTGGGAAGAAGCATTTGGTGGAGTCTTATGGTGAGCTTTATGTGGTTGATCAGTACTATGAGAGGGTGAGTGTTCGTCACGGCAGGGAGGATGATAACATTTTCGGGGAGTATCACAATTCGCGCTACGATTCTGATGCAATCGATTTTAAAGTCTATAAGCTGGATCAAGAATGGAGTAAATGGGACAATGTGAAAAACTTGGGAGATCATGTGTTTGTTCTGAGCAAAGATGGGTCTTTCTGCGTCTCCACCAAAGAGTTTGATGGAGTGAAGGGAAATTGCATCTTCTTCATTGAACGAGTGTCACCTACTGTAAGAGCAATGTATCACAGTCGTGTGTTCGATTTAGAGGACGGATCTATGAGGGATCTAGCGTCTTTGCCGATTTCTCGGATGGTCGAGCCACCTTCAACTTGGCTCAGCAATGATCTGAGTCCTTCTGCATCTGAAAGTGAATGTGAAATATTATTGCCGGTTCAATAA

Protein Analysis

332

Amino Acids

37.76

Weight (kDa)

4.92

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 16 - 275 2e-37 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AccII CGCG 1 cut(s) 634
AciI CCGC 1 cut(s) 302
AclWI GGATC 4 cut(s) 104, 684, 877, 888
AcsI RAATTY 2 cut(s) 166, 215
AfaI GTAC 4 cut(s) 94, 261, 410, 566
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 4 cut(s) 157, 809, 924, 992
AjuI GAANNNNNNNTTGG 2 cut(s) 509, 541
AleI CACNNNNGTG 1 cut(s) 846
AluBI AGCT 6 cut(s) 193, 285, 361, 467, 547, 673
AluI AGCT 6 cut(s) 193, 285, 361, 467, 547, 673
Alw26I GTCTC 2 cut(s) 129, 763
AlwI GGATC 4 cut(s) 104, 684, 877, 888
ApoI RAATTY 2 cut(s) 166, 215
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 7 cut(s) 76, 127, 428, 487, 554, 589, 810
AvaII GGWCC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 18
BccI CCATC 4 cut(s) 52, 737, 770, 901
BceAI ACGGC 1 cut(s) 607
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 129, 763
BfaI CTAG 2 cut(s) 120, 884
BlpI GCTNAGC 1 cut(s) 932
BmcAI AGTACT 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 637, 804, 965
BmuI ACTGGG 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 932
Bsa29I ATCGAT 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 708, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 985
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 3 cut(s) 298, 840, 943
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 3 cut(s) 379, 607, 912
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 3 cut(s) 298, 840, 943
BseMII CTCAG 5 cut(s) 9, 145, 725, 935, 946
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 4 cut(s) 35, 89, 254, 371
Bsh1236I CGCG 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 654
BsiSI CCGG 2 cut(s) 113, 986
BslFI GGGAC 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 129, 763
BsmBI CGTCTC 1 cut(s) 763
BsmFI GGGAC 1 cut(s) 710
BsmI GAATGC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
Bsp1720I GCTNAGC 1 cut(s) 932
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 5 cut(s) 10, 144, 726, 936, 945
BspDI ATCGAT 1 cut(s) 654
BspFNI CGCG 1 cut(s) 634
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 4 cut(s) 104, 684, 877, 888
BspQI GCTCTTC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 3 cut(s) 298, 840, 943
BsrFI RCCGGY 1 cut(s) 985
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 985
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 4 cut(s) 29, 448, 826, 845
Bst6I CTCTTC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 408
BstDEI CTNAG 5 cut(s) 18, 131, 734, 932, 944
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 379, 607, 912
BstFNI CGCG 1 cut(s) 634
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 8 cut(s) 112, 315, 562, 679, 721, 872, 883, 943
BstMAI GTCTC 2 cut(s) 129, 763
BstMBI GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
BstUI CGCG 1 cut(s) 634
BstX2I RGATCY 2 cut(s) 869, 880
BstYI RGATCY 2 cut(s) 869, 880
Bsu15I ATCGAT 1 cut(s) 654
BsuTUI ATCGAT 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 379, 607, 912
BtsIMutI CAGTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 636
Cfr10I RCCGGY 1 cut(s) 985
Cfr13I GGNCC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 654
CseI GACGC 2 cut(s) 745, 876
Csp6I GTAC 4 cut(s) 93, 260, 409, 565
CviAII CATG 4 cut(s) 13, 57, 340, 722
CviQI GTAC 4 cut(s) 93, 260, 409, 565
DdeI CTNAG 5 cut(s) 18, 131, 734, 932, 944
DpnI GATC 8 cut(s) 111, 314, 561, 678, 720, 871, 882, 942
DpnII GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 763
FaeI CATG 4 cut(s) 16, 60, 343, 725
FaqI GGGAC 1 cut(s) 710
FatI CATG 4 cut(s) 12, 56, 339, 721
FbaI TGATCA 1 cut(s) 559
FokI GGATG 3 cut(s) 386, 614, 919
FspBI CTAG 2 cut(s) 120, 884
GlaI GCGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 491
HapII CCGG 2 cut(s) 113, 986
HgaI GACGC 2 cut(s) 745, 876
HhaI GCGC 1 cut(s) 636
Hin1II CATG 4 cut(s) 16, 60, 343, 725
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 5 cut(s) 5, 478, 533, 641, 946
HpaII CCGG 2 cut(s) 113, 986
HphI GGTGA 7 cut(s) 76, 127, 428, 487, 554, 589, 810
Hpy166II GTNNAC 2 cut(s) 104, 409
Hpy188I TCNGA 7 cut(s) 134, 183, 646, 735, 906, 945, 961
Hpy188III TCNNGA 3 cut(s) 340, 470, 680
Hpy8I GTNNAC 2 cut(s) 104, 409
HpyAV CCTTC 4 cut(s) 317, 778, 930, 960
HpyCH4III ACNGT 4 cut(s) 29, 448, 826, 845
HpyCH4V TGCA 4 cut(s) 250, 650, 795, 956
HpyF3I CTNAG 5 cut(s) 18, 131, 734, 932, 944
Hsp92II CATG 4 cut(s) 16, 60, 343, 725
HspAI GCGC 1 cut(s) 634
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
LguI GCTCTTC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 7 cut(s) 75, 126, 317, 455, 467, 580, 659
LweI GCATC 3 cut(s) 637, 804, 965
MaeI CTAG 2 cut(s) 120, 884
MaeIII GTNAC 6 cut(s) 6, 115, 232, 272, 587, 816
MalI GATC 8 cut(s) 111, 314, 561, 678, 720, 871, 882, 942
MboI GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
MboII GAAGA 4 cut(s) 27, 529, 790, 793
MflI RGATCY 2 cut(s) 869, 880
MluCI AATT 7 cut(s) 166, 215, 241, 254, 460, 628, 790
MlyI GAGTC 3 cut(s) 14, 542, 955
MroXI GAANNNNTTC 1 cut(s) 448
MseI TTAA 4 cut(s) 170, 240, 281, 660
MslI CAYNNNNRTG 2 cut(s) 499, 846
MspI CCGG 2 cut(s) 113, 986
Mva1269I GAATGC 1 cut(s) 425
MvnI CGCG 1 cut(s) 634
NcoI CCATGG 1 cut(s) 56
NdeII GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
NlaIII CATG 4 cut(s) 16, 60, 343, 725
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 5 cut(s) 6, 115, 232, 587, 816
OliI CACNNNNGTG 1 cut(s) 846
PagI TCATGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 40
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 478, 641
PflFI GACNNNGTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 89
PleI GAGTC 3 cut(s) 13, 541, 954
PpsI GAGTC 3 cut(s) 13, 541, 954
PpuMI RGGWCCY 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 2 cut(s) 869, 880
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 4 cut(s) 94, 261, 410, 566
RsaNI GTAC 4 cut(s) 93, 260, 409, 565
RseI CAYNNNNRTG 2 cut(s) 499, 846
SapI GCTCTTC 1 cut(s) 40
SaqAI TTAA 4 cut(s) 170, 240, 281, 660
Sau3AI GATC 8 cut(s) 109, 312, 559, 676, 718, 869, 880, 940
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 3 cut(s) 14, 542, 955
SfaNI GCATC 3 cut(s) 637, 804, 965
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 2 cut(s) 499, 846
Sse9I AATT 7 cut(s) 166, 215, 241, 254, 460, 628, 790
SsiI CCGC 1 cut(s) 302
SspI AATATT 1 cut(s) 978
SspMI CTAG 2 cut(s) 120, 884
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 4 cut(s) 29, 448, 826, 845
TaqI TCGA 3 cut(s) 654, 855, 912
TasI AATT 7 cut(s) 166, 215, 241, 254, 460, 628, 790
TatI WGTACW 2 cut(s) 408, 564
TfiI GAWTC 2 cut(s) 478, 641
Tru1I TTAA 4 cut(s) 170, 240, 281, 660
Tru9I TTAA 4 cut(s) 170, 240, 281, 660
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 5 cut(s) 6, 115, 232, 587, 816
Tsp45I GTSAC 5 cut(s) 6, 115, 232, 587, 816
TspDTI ATGAA 3 cut(s) 27, 328, 793
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 79
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 166, 215
XcmI CCANNNNNNNNNTGG 2 cut(s) 284, 924
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 2 cut(s) 120, 884
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.