Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

10575701 .. 10576521

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATCAAATTAGGGAAGTCGTATTTTCTGAGATACATCCTTGGCTCTAGTTCTGTTTGTGGTTTAAAGAAAGTGATTTTAATGCCTGCTGAGATTGTTGATTGTGCTATTCTGGTTATCTCTGATAAGGGAAATTTGGGTTTTGCTAAAAGTGGAAATGAGAAACTTACATGGTTTAGTAATGGAGGTTTTGTTTTTGATGATGTTATTGTTTATAAGGGTCAGCCATATGTACATTTGGTAGAGTCTTGTGGAGAGCTTTATGTGGTCGATATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTAGATTTTTCTTTATTTGTCCGTTGGCATCATGGAAGACACCAAAGATATCAGTCTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATCGAGCGTTTTTCTTGGCTATGGATTGCTGTTTCTCTGTTTCGGCCCAAGAATTGGCTGGGTGCAGAGGGAATTGCATTTACTTCTCAGATGAAAACAACGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATATTATTCAGAAGTTGAGATCTTCCCCAGGCGATTCCCAAATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCGTATTCTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

242

Amino Acids

27.39

Weight (kDa)

5.31

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	22 - 190	2.8e-27	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	523
AclI	AACGTT	1 cut(s)	570
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	2 cut(s)	427, 452
AjnI	CCWGG	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	3 cut(s)	259, 462, 697
AluI	AGCT	3 cut(s)	259, 462, 697
Alw21I	GWGCWC	1 cut(s)	699
AoxI	GGCC	2 cut(s)	513, 680
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	514, 628
AsuHPI	GGTGA	2 cut(s)	392, 479
AvaII	GGWCC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	699
BccI	CCATC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	2 cut(s)	3, 283
BfaI	CTAG	2 cut(s)	48, 597
BglII	AGATCT	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	514, 628
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	40, 658
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	40, 658
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	3 cut(s)	20, 81, 570
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	515, 682
BsiHKAI	GWGCWC	1 cut(s)	699
BslI	CCNNNNNNNGG	1 cut(s)	523
BsnI	GGCC	2 cut(s)	515, 682
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	3, 283, 469, 650
BspANI	GGCC	2 cut(s)	515, 682
BspCNI	CTCAG	3 cut(s)	21, 82, 569
BspLI	GGNNCC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	40, 658
BssMI	GATC	4 cut(s)	3, 283, 469, 650
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	5 cut(s)	29, 90, 556, 584, 622
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	6, 286, 472, 653
BstMBI	GATC	4 cut(s)	3, 283, 469, 650
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	515, 682
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	514, 628
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	4 cut(s)	171, 353, 613, 708
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	5 cut(s)	29, 90, 556, 584, 622
DpnI	GATC	4 cut(s)	5, 285, 471, 652
DpnII	GATC	4 cut(s)	3, 283, 469, 650
DraI	TTTAAA	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	699
Eco32I	GATATC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	174, 356, 616, 711
FatI	CATG	4 cut(s)	170, 352, 612, 707
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	2 cut(s)	3, 283
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	699
FspBI	CTAG	2 cut(s)	48, 597
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	515, 682
Hin1II	CATG	4 cut(s)	174, 356, 616, 711
HinfI	GANTC	2 cut(s)	245, 665
HphI	GGTGA	2 cut(s)	392, 479
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	30, 124, 559, 642
Hpy188III	TCNNGA	2 cut(s)	287, 722
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	3 cut(s)	411, 534, 546
HpyF3I	CTNAG	5 cut(s)	29, 90, 556, 584, 622
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	174, 356, 616, 711
Ksp22I	TGATCA	2 cut(s)	3, 283
Kzo9I	GATC	4 cut(s)	3, 283, 469, 650
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	1 cut(s)	707
LpnPI	CCDG	9 cut(s)	98, 99, 297, 363, 513, 615, 645, 672, 707
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	48, 597
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	4 cut(s)	5, 285, 471, 652
MboI	GATC	4 cut(s)	3, 283, 469, 650
MboII	GAAGA	3 cut(s)	369, 469, 645
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	699
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	5 cut(s)	8, 133, 521, 541, 690
MluNI	TGGCCA	1 cut(s)	682
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	4 cut(s)	179, 530, 619, 696
Mox20I	TGGCCA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	4 cut(s)	65, 80, 402, 573
Msp20I	TGGCCA	1 cut(s)	682
MspR9I	CCNGG	1 cut(s)	660
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	660
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	3, 283, 469, 650
NlaIII	CATG	4 cut(s)	174, 356, 616, 711
NlaIV	GGNNCC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	678
NspI	RCATGY	1 cut(s)	711
PciI	ACATGT	1 cut(s)	707
PciSI	GCTCTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	523
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	707
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	699
Psp1406I	AACGTT	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	2 cut(s)	514, 628
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	65, 80, 402, 573
Sau3AI	GATC	4 cut(s)	3, 283, 469, 650
Sau96I	GGNCC	2 cut(s)	514, 628
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	699
SetI	ASST	8 cut(s)	190, 261, 393, 408, 464, 573, 688, 699
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	5 cut(s)	8, 133, 521, 541, 690
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	2 cut(s)	48, 597
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	270, 472
TasI	AATT	5 cut(s)	8, 133, 521, 541, 690
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	4 cut(s)	65, 80, 402, 573
Tru9I	TTAA	4 cut(s)	65, 80, 402, 573
TspDTI	ATGAA	2 cut(s)	576, 601
TspGWI	ACGGA	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XspI	CTAG	2 cut(s)	48, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.