Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

24446315 .. 24446889

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65735.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTGGAATGTTGTGGAGAGCTTTACATTAGCAAAATGGATAGAAGTTAAGTCATTGGGAGACAATGCGTTTGTGATTGCTACCGATACTTGTTTCTCGGTTTTGGCTCATGAGTTTTACGGATGCCTTCAAAACTCTATTTACTTCACAGACAACAAGGATATATTTAAGCTAGACAATGGACCAATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006109 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010565 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043255 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045912 GO:0046137 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0051276 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

64

Amino Acids

7.36

Weight (kDa)

4.45

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	11 - 55	5.2e-11	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	2 cut(s)	21, 172
AluI	AGCT	2 cut(s)	21, 172
Alw26I	GTCTC	1 cut(s)	54
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspS9I	GGNCC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	113
BseGI	GGATG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	128
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	3 cut(s)	21, 107, 172
CviKI_1	RGCY	3 cut(s)	21, 107, 172
Eco47I	GGWCC	1 cut(s)	182
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	111, 164
FatI	CATG	1 cut(s)	109
FokI	GGATG	1 cut(s)	135
FspBI	CTAG	1 cut(s)	173
Hin1II	CATG	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	113
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	173
MseI	TTAA	3 cut(s)	48, 168, 193
NlaIII	CATG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	48, 168, 193
Sau96I	GGNCC	1 cut(s)	182
SetI	ASST	2 cut(s)	23, 174
SfaNI	GCATC	1 cut(s)	113
SgeI	CNNG	5 cut(s)	102, 109, 122, 169, 185
SinI	GGWCC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	48, 168, 193
Tru9I	TTAA	3 cut(s)	48, 168, 193
TspGWI	ACGGA	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	182
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.