Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031755.1

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 699

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031755.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgccttgtgactttttggacattgatgatgtgtatggggtttttatggtttataacgaagggaagctgggttttgtgagatttggagatgagaagttgactcgtgtggatgaacagaatgctcactatgatgatatcattgtgtataagggtcaatgctatgttgttgataagtggggaacaatttcatgggttaattcagctttgcaggtgattcagttttcgcctccgctatgtgggtttggcgggcggaagtatttggtggaatgtcgtgatgatctttatgtggttgatcagttctttgaaaaggtgactcagcagagcaatatagtagggaccccatttccggataatgagttactttggtggcattatcataaaatgcgttctgatgcagaatcaattgatttcaaggtttataagctggatcaagaatggggtaaatgggtcgatgtaaaagacatgggagatgacatctttattttaagcaatgatggatctttctctgtctccgccaaagagtttgctggagtgaagggaaattgcattttctttactgaaagtgcgttaactactggaaggttgttcccttgtgtgttcaatttagaggatggtttgtttagcaaagtatctttgcgctgtccacaaatggtccatccaccttcaagttggctcagccctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

228

Amino Acids

26.19

Weight (kDa)

4.66

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	54, 420
AarI	CACCTGC	1 cut(s)	199
Acc36I	ACCTGC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	4 cut(s)	230, 246, 250, 513
AclWI	GGATC	2 cut(s)	435, 505
AfiI	CCNNNNNNNGG	2 cut(s)	236, 346
AgsI	TTSAA	4 cut(s)	305, 412, 601, 666
AluBI	AGCT	3 cut(s)	67, 203, 424
AluI	AGCT	3 cut(s)	67, 203, 424
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	2 cut(s)	435, 505
Aor13HI	TCCGGA	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	336, 652
AsuHPI	GGTGA	2 cut(s)	223, 322
AvaII	GGWCC	2 cut(s)	336, 652
BauI	CACGAG	1 cut(s)	102
BccI	CCATC	3 cut(s)	488, 605, 663
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	199
BlpI	GCTNAGC	1 cut(s)	674
Bme18I	GGWCC	2 cut(s)	336, 652
BmgT120I	GGNCC	2 cut(s)	336, 652
BmiI	GGNNCC	2 cut(s)	337, 338
BmsI	GCATC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 346
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	496
BseAI	TCCGGA	1 cut(s)	346
BseGI	GGATG	3 cut(s)	115, 616, 655
BseLI	CCNNNNNNNGG	2 cut(s)	236, 346
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	580
BseYI	CCCAGC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	236, 346
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	277, 292, 427, 497
Bsp1720I	GCTNAGC	1 cut(s)	674
BspACI	CCGC	4 cut(s)	230, 246, 250, 513
BspCNI	CTCAG	2 cut(s)	328, 687
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	337, 338
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	435, 505
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	580
BssMI	GATC	4 cut(s)	277, 292, 427, 497
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	315, 674
BstF5I	GGATG	3 cut(s)	115, 616, 655
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	4 cut(s)	280, 295, 430, 500
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	4 cut(s)	277, 292, 427, 497
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	115, 616, 655
BveI	ACCTGC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	248
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	336, 652
CviAII	CATG	2 cut(s)	189, 463
CviJI	RGCY	5 cut(s)	67, 203, 424, 673, 678
CviKI_1	RGCY	5 cut(s)	67, 203, 424, 673, 678
DdeI	CTNAG	2 cut(s)	315, 674
DpnI	GATC	4 cut(s)	279, 294, 429, 499
DpnII	GATC	4 cut(s)	277, 292, 427, 497
EciI	GGCGGA	2 cut(s)	265, 502
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	336, 652
EcoO109I	RGGNCCY	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	136
FaeI	CATG	2 cut(s)	192, 466
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	188, 462
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	292
FokI	GGATG	3 cut(s)	122, 623, 642
GlaI	GCGC	1 cut(s)	638
GsaI	CCCAGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	549
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	2 cut(s)	192, 466
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	2 cut(s)	99, 570
HindII	GTYRAC	2 cut(s)	99, 570
HinfI	GANTC	4 cut(s)	100, 214, 313, 398
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	223, 322
Hpy166II	GTNNAC	3 cut(s)	99, 570, 644
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	272, 347, 431
Hpy8I	GTNNAC	3 cut(s)	99, 570, 644
HpyAV	CCTTC	4 cut(s)	53, 529, 573, 672
HpyCH4V	TGCA	3 cut(s)	208, 395, 546
HpyF3I	CTNAG	2 cut(s)	315, 674
Hsp92II	CATG	2 cut(s)	192, 466
HspAI	GCGC	1 cut(s)	637
KflI	GGGWCCC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	277, 292, 427, 497
LpnPI	CCDG	6 cut(s)	53, 194, 360, 410, 513, 561
LweI	GCATC	1 cut(s)	382
MaeIII	GTNAC	3 cut(s)	8, 310, 357
MalI	GATC	4 cut(s)	279, 294, 429, 499
MboI	GATC	4 cut(s)	277, 292, 427, 497
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	497
MluCI	AATT	5 cut(s)	183, 196, 402, 541, 601
MlyI	GAGTC	2 cut(s)	94, 307
MnlI	CCTC	2 cut(s)	237, 601
MroI	TCCGGA	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	3 cut(s)	195, 485, 569
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	124
NdeII	GATC	4 cut(s)	277, 292, 427, 497
NlaIII	CATG	2 cut(s)	192, 466
NlaIV	GGNNCC	2 cut(s)	337, 338
NmuCI	GTSAC	2 cut(s)	8, 310
PaqCI	CACCTGC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	214, 398
PleI	GAGTC	2 cut(s)	94, 307
PpsI	GAGTC	2 cut(s)	94, 307
PpuMI	RGGWCCY	1 cut(s)	336
PsiI	TTATAA	2 cut(s)	54, 420
Psp5II	RGGWCCY	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	337, 338
PspPI	GGNCC	2 cut(s)	336, 652
PspPPI	RGGWCCY	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	195, 485, 569
Sau3AI	GATC	4 cut(s)	277, 292, 427, 497
Sau96I	GGNCC	2 cut(s)	336, 652
SchI	GAGTC	2 cut(s)	94, 307
SetI	ASST	8 cut(s)	69, 205, 213, 312, 417, 426, 584, 664
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	2 cut(s)	336, 652
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	5 cut(s)	183, 196, 402, 541, 601
SsiI	CCGC	4 cut(s)	230, 246, 250, 513
TaqI	TCGA	1 cut(s)	450
TasI	AATT	5 cut(s)	183, 196, 402, 541, 601
TfiI	GAWTC	2 cut(s)	214, 398
Tru1I	TTAA	3 cut(s)	195, 485, 569
Tru9I	TTAA	3 cut(s)	195, 485, 569
TseFI	GTSAC	2 cut(s)	8, 310
Tsp45I	GTSAC	2 cut(s)	8, 310
TspDTI	ATGAA	2 cut(s)	126, 177
VpaK11BI	GGWCC	2 cut(s)	336, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.