Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

9400955 .. 9402088

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGTTATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCGGTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAACGCTACCTTCCTACCTCCAACAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTCATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGATTACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCTTTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTCAAATATTCGATGGATTGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTATATCAAGAATAGTGACAAAATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAGATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAATTTGGTGGATTAGTTTATCACAGCTTACCATTGTTCAACAGACATCTTCAACTCCGTTGGACTACTATAAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATGCATTGTTCATGAACTTAGCATAACTCGAAATCATATCCAGAGGACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTGCTTGGGAGACAACACACTCATTGTTGCTTGCAACAGTTGTTTTACTGTCGTAGCCTCTGAGTACCATGGATGTTTGAAGAATTCTATTTACTTCTCTTATTATGATGTCAAGAAGGCCGAAAATATAAAAGTGTTCAAGCTTGATGATGGTAGTATCACCCAGAGGACTGATATTTCTTCTCAGAGTTGTTTTCACATGTTCTCTCTTCCCTTCCTCAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

348

Amino Acids

40.32

Weight (kDa)

8.52

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	74 - 333	1.1e-42	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AatII	GACGTC	1 cut(s)	81
AciI	CCGC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	901
AcuI	CTGAAG	2 cut(s)	51, 128
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	4 cut(s)	251, 320, 364, 494
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	8 cut(s)	158, 364, 404, 421, 632, 645, 898, 958
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	490, 522
AluBI	AGCT	2 cut(s)	619, 961
AluI	AGCT	2 cut(s)	619, 961
Alw26I	GTCTC	1 cut(s)	822
AoxI	GGCC	1 cut(s)	936
ApoI	RAATTY	1 cut(s)	901
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	759
AsuHPI	GGTGA	2 cut(s)	325, 970
AvaII	GGWCC	1 cut(s)	759
BauI	CACGAG	2 cut(s)	685, 692
BbsI	GAAGAC	1 cut(s)	134
BccI	CCATC	5 cut(s)	249, 407, 496, 778, 962
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	109
BciVI	GTATCC	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	4 cut(s)	41, 260, 270, 353
BfuI	GTATCC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	709
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	759
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	576, 886
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 320, 364, 494
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	576, 886
BseGI	GGATG	2 cut(s)	260, 896
BseLI	CCNNNNNNNGG	4 cut(s)	251, 320, 364, 494
BseMII	CTCAG	2 cut(s)	870, 1016
BshFI	GGCC	1 cut(s)	938
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	4 cut(s)	251, 320, 364, 494
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	938
Bsp143I	GATC	1 cut(s)	709
Bsp19I	CCATGG	1 cut(s)	886
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	3 cut(s)	4, 871, 1015
BspHI	TCATGA	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	576, 886
BssMI	GATC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	2 cut(s)	685, 692
BssT1I	CCWWGG	1 cut(s)	886
Bst2BI	CACGAG	2 cut(s)	685, 692
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	4 cut(s)	59, 763, 857, 868
Bst6I	CTCTTC	1 cut(s)	1032
BstACI	GRCGYC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	326, 850
BstDEI	CTNAG	4 cut(s)	12, 731, 879, 1002
BstDSI	CCRYGG	2 cut(s)	576, 886
BstENI	CCTNNNNNAGG	2 cut(s)	249, 362
BstF5I	GGATG	2 cut(s)	260, 896
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	1021
BstSCI	CCNGG	1 cut(s)	107
BstSNI	TACGTA	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuI	GTATCC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	938
BtgI	CCRYGG	2 cut(s)	576, 886
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	260, 896
Cac8I	GCNNGC	2 cut(s)	326, 850
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	759
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	883
CviAII	CATG	5 cut(s)	240, 559, 725, 887, 1018
CviJI	RGCY	8 cut(s)	194, 259, 278, 619, 691, 875, 938, 961
CviKI_1	RGCY	8 cut(s)	194, 259, 278, 619, 691, 875, 938, 961
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	4 cut(s)	12, 731, 879, 1002
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	1032
Eco105I	TACGTA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	886
Eco47I	GGWCC	1 cut(s)	759
Eco57I	CTGAAG	2 cut(s)	51, 128
EcoNI	CCTNNNNNAGG	2 cut(s)	249, 362
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	886
EcoT22I	ATGCAT	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	886
FaeI	CATG	5 cut(s)	243, 562, 728, 890, 1021
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	5 cut(s)	239, 558, 724, 886, 1017
FokI	GGATG	2 cut(s)	267, 903
FspBI	CTAG	4 cut(s)	41, 260, 270, 353
GlaI	GCGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	938
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	243, 562, 728, 890, 1021
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	3 cut(s)	382, 400, 443
HphI	GGTGA	2 cut(s)	325, 970
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	7 cut(s)	22, 379, 448, 493, 544, 880, 1005
Hpy188III	TCNNGA	4 cut(s)	469, 725, 754, 931
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	7 cut(s)	176, 243, 358, 415, 488, 928, 1042
HpyCH4III	ACNGT	4 cut(s)	59, 763, 857, 868
HpyCH4IV	ACGT	3 cut(s)	78, 85, 565
HpyCH4V	TGCA	3 cut(s)	53, 717, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	4 cut(s)	12, 731, 879, 1002
HpySE526I	ACGT	3 cut(s)	78, 85, 565
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	243, 562, 728, 890, 1021
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	7 cut(s)	42, 94, 112, 121, 306, 767, 995
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	4 cut(s)	41, 260, 270, 353
MaeII	ACGT	3 cut(s)	78, 85, 565
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MflI	RGATCY	1 cut(s)	709
MluCI	AATT	5 cut(s)	48, 460, 516, 594, 901
MmeI	TCCRAC	4 cut(s)	93, 201, 488, 633
Mph1103I	ATGCAT	1 cut(s)	719
MseI	TTAA	5 cut(s)	47, 519, 584, 771, 1045
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	159
NcoI	CCATGG	1 cut(s)	886
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	5 cut(s)	243, 562, 728, 890, 1021
NmuCI	GTSAC	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	719
NspI	RCATGY	1 cut(s)	1021
PagI	TCATGA	1 cut(s)	724
PciI	ACATGT	1 cut(s)	1017
PfeI	GAWTC	3 cut(s)	382, 400, 443
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	1017
PsiI	TTATAA	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	759
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
SaqAI	TTAA	5 cut(s)	47, 519, 584, 771, 1045
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	1 cut(s)	759
ScrFI	CCNGG	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	759
SnaBI	TACGTA	1 cut(s)	86
Sse9I	AATT	5 cut(s)	48, 460, 516, 594, 901
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	2 cut(s)	408, 701
SspMI	CTAG	4 cut(s)	41, 260, 270, 353
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	4 cut(s)	59, 763, 857, 868
TaiI	ACGT	3 cut(s)	81, 88, 568
TaqI	TCGA	3 cut(s)	411, 531, 742
TasI	AATT	5 cut(s)	48, 460, 516, 594, 901
TfiI	GAWTC	3 cut(s)	382, 400, 443
Tru1I	TTAA	5 cut(s)	47, 519, 584, 771, 1045
Tru9I	TTAA	5 cut(s)	47, 519, 584, 771, 1045
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	228, 713, 741
TspGWI	ACGGA	3 cut(s)	80, 209, 639
VpaK11BI	GGWCC	1 cut(s)	759
XagI	CCTNNNNNAGG	2 cut(s)	249, 362
XapI	RAATTY	1 cut(s)	901
XceI	RCATGY	1 cut(s)	1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	761
XspI	CTAG	4 cut(s)	41, 260, 270, 353
ZraI	GACGTC	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.