F-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 89 - 340 | 3.2e-28 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 147 |
| AccI | GTMKAC | 1 cut(s) | 14 |
| AccII | CGCG | 1 cut(s) | 227 |
| AciI | CCGC | 2 cut(s) | 48, 425 |
| AcsI | RAATTY | 2 cut(s) | 519, 802 |
| AcuI | CTGAAG | 1 cut(s) | 193 |
| AcvI | CACGTG | 1 cut(s) | 239 |
| AcyI | GRCGYC | 2 cut(s) | 148, 438 |
| AfaI | GTAC | 1 cut(s) | 695 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 196, 281, 318, 461 |
| AflII | CTTAAG | 1 cut(s) | 431 |
| AjnI | CCWGG | 1 cut(s) | 460 |
| AluBI | AGCT | 5 cut(s) | 31, 213, 772, 1030, 1107 |
| AluI | AGCT | 5 cut(s) | 31, 213, 772, 1030, 1107 |
| Alw21I | GWGCWC | 2 cut(s) | 33, 481 |
| Alw26I | GTCTC | 4 cut(s) | 121, 179, 406, 906 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 93 |
| ApeKI | GCWGC | 3 cut(s) | 87, 213, 242 |
| ApoI | RAATTY | 2 cut(s) | 519, 802 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 905, 937 |
| AseI | ATTAAT | 1 cut(s) | 669 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 137, 578 |
| AspLEI | GCGC | 2 cut(s) | 150, 227 |
| AspS9I | GGNCC | 1 cut(s) | 199 |
| AsuC2I | CCSGG | 2 cut(s) | 222, 319 |
| AsuHPI | GGTGA | 1 cut(s) | 1048 |
| AsuII | TTCGAA | 1 cut(s) | 1089 |
| AvaII | GGWCC | 1 cut(s) | 199 |
| AxyI | CCTNAGG | 1 cut(s) | 1017 |
| BanI | GGYRCC | 1 cut(s) | 147 |
| BanII | GRGCYC | 1 cut(s) | 33 |
| BbrPI | CACGTG | 1 cut(s) | 239 |
| BbsI | GAAGAC | 2 cut(s) | 199, 454 |
| Bbv12I | GWGCWC | 2 cut(s) | 33, 481 |
| BbvI | GCAGC | 3 cut(s) | 99, 200, 254 |
| BccI | CCATC | 4 cut(s) | 179, 336, 533, 922 |
| BceAI | ACGGC | 1 cut(s) | 861 |
| BciT130I | CCWGG | 1 cut(s) | 462 |
| BciVI | GTATCC | 1 cut(s) | 458 |
| BclI | TGATCA | 1 cut(s) | 505 |
| BcnI | CCSGG | 2 cut(s) | 222, 319 |
| BcoDI | GTCTC | 4 cut(s) | 121, 179, 406, 906 |
| BfaI | CTAG | 4 cut(s) | 65, 194, 1031, 1104 |
| BfmI | CTRYAG | 1 cut(s) | 730 |
| BfoI | RGCGCY | 1 cut(s) | 151 |
| BfrI | CTTAAG | 1 cut(s) | 431 |
| BfuI | GTATCC | 1 cut(s) | 458 |
| BisI | GCNGC | 4 cut(s) | 48, 88, 214, 243 |
| BlsI | GCNGC | 4 cut(s) | 49, 89, 215, 244 |
| Bme1390I | CCNGG | 3 cut(s) | 222, 319, 462 |
| Bme18I | GGWCC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 1 cut(s) | 199 |
| BmiI | GGNNCC | 1 cut(s) | 149 |
| BmrFI | CCNGG | 3 cut(s) | 222, 319, 462 |
| BmsI | GCATC | 3 cut(s) | 99, 663, 965 |
| BpiI | GAAGAC | 2 cut(s) | 199, 454 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 246, 278 |
| Bpu14I | TTCGAA | 1 cut(s) | 1089 |
| BpuMI | CCSGG | 2 cut(s) | 222, 319 |
| BsaAI | YACGTR | 1 cut(s) | 239 |
| BsaBI | GATNNNNATC | 2 cut(s) | 507, 510 |
| BsaHI | GRCGYC | 2 cut(s) | 148, 438 |
| BsaI | GGTCTC | 1 cut(s) | 179 |
| BsaJI | CCNNGG | 3 cut(s) | 220, 441, 906 |
| BsaWI | WCCGGW | 1 cut(s) | 22 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 299, 329 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 196, 281, 318, 461 |
| Bse1I | ACTGG | 1 cut(s) | 560 |
| Bse21I | CCTNAGG | 1 cut(s) | 1017 |
| Bse3DI | GCAATG | 1 cut(s) | 356 |
| Bse8I | GATNNNNATC | 2 cut(s) | 507, 510 |
| BseBI | CCWGG | 1 cut(s) | 462 |
| BseDI | CCNNGG | 3 cut(s) | 220, 441, 906 |
| BseGI | GGATG | 2 cut(s) | 544, 980 |
| BseJI | GATNNNNATC | 2 cut(s) | 507, 510 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 196, 281, 318, 461 |
| BseMI | GCAATG | 1 cut(s) | 356 |
| BseNI | ACTGG | 1 cut(s) | 560 |
| BseRI | GAGGAG | 6 cut(s) | 23, 41, 100, 256, 259, 323 |
| BseXI | GCAGC | 3 cut(s) | 99, 200, 254 |
| BsgI | GTGCAG | 1 cut(s) | 261 |
| Bsh1236I | CGCG | 1 cut(s) | 227 |
| Bsh1285I | CGRYCG | 1 cut(s) | 56 |
| BshNI | GGYRCC | 1 cut(s) | 147 |
| BsiEI | CGRYCG | 1 cut(s) | 56 |
| BsiHKAI | GWGCWC | 2 cut(s) | 33, 481 |
| BsiSI | CCGG | 4 cut(s) | 23, 120, 222, 318 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 196, 281, 318, 461 |
| BsmAI | GTCTC | 4 cut(s) | 121, 179, 406, 906 |
| Bso31I | GGTCTC | 1 cut(s) | 179 |
| Bsp119I | TTCGAA | 1 cut(s) | 1089 |
| Bsp1286I | GDGCHC | 2 cut(s) | 33, 481 |
| Bsp143I | GATC | 4 cut(s) | 53, 382, 505, 676 |
| BspACI | CCGC | 2 cut(s) | 48, 425 |
| BspFNI | CGCG | 1 cut(s) | 227 |
| BspHI | TCATGA | 1 cut(s) | 961 |
| BspLI | GGNNCC | 1 cut(s) | 149 |
| BspT104I | TTCGAA | 1 cut(s) | 1089 |
| BspT107I | GGYRCC | 1 cut(s) | 147 |
| BspTI | CTTAAG | 1 cut(s) | 431 |
| BspTNI | GGTCTC | 1 cut(s) | 179 |
| BsrDI | GCAATG | 1 cut(s) | 356 |
| BsrI | ACTGG | 1 cut(s) | 560 |
| BssECI | CCNNGG | 3 cut(s) | 220, 441, 906 |
| BssMI | GATC | 4 cut(s) | 53, 382, 505, 676 |
| BssNI | GRCGYC | 2 cut(s) | 148, 438 |
| BssT1I | CCWWGG | 2 cut(s) | 441, 906 |
| Bst2UI | CCWGG | 1 cut(s) | 462 |
| Bst4CI | ACNGT | 1 cut(s) | 400 |
| BstACI | GRCGYC | 2 cut(s) | 148, 438 |
| BstAFI | CTTAAG | 1 cut(s) | 431 |
| BstBAI | YACGTR | 1 cut(s) | 239 |
| BstBI | TTCGAA | 1 cut(s) | 1089 |
| BstDEI | CTNAG | 1 cut(s) | 1017 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 194 |
| BstF5I | GGATG | 2 cut(s) | 544, 980 |
| BstFNI | CGCG | 1 cut(s) | 227 |
| BstH2I | RGCGCY | 1 cut(s) | 151 |
| BstHHI | GCGC | 2 cut(s) | 150, 227 |
| BstKTI | GATC | 4 cut(s) | 56, 385, 508, 679 |
| BstMAI | GTCTC | 4 cut(s) | 121, 179, 406, 906 |
| BstMBI | GATC | 4 cut(s) | 53, 382, 505, 676 |
| BstMCI | CGRYCG | 1 cut(s) | 56 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 222 |
| BstNI | CCWGG | 1 cut(s) | 462 |
| BstSCI | CCNGG | 3 cut(s) | 220, 317, 460 |
| BstSFI | CTRYAG | 1 cut(s) | 730 |
| BstUI | CGCG | 1 cut(s) | 227 |
| BstV1I | GCAGC | 3 cut(s) | 99, 200, 254 |
| BstV2I | GAAGAC | 2 cut(s) | 199, 454 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1017 |
| BsuI | GTATCC | 1 cut(s) | 458 |
| BtgZI | GCGATG | 1 cut(s) | 157 |
| BtsCI | GGATG | 2 cut(s) | 544, 980 |
| BtsIMutI | CAGTG | 1 cut(s) | 396 |
| CaiI | CAGNNNCTG | 1 cut(s) | 93 |
| CciI | TCATGA | 1 cut(s) | 961 |
| CfoI | GCGC | 2 cut(s) | 150, 227 |
| Cfr13I | GGNCC | 1 cut(s) | 199 |
| CseI | GACGC | 1 cut(s) | 446 |
| Csp6I | GTAC | 1 cut(s) | 694 |
| CviAII | CATG | 7 cut(s) | 102, 203, 304, 515, 718, 745, 962 |
| CviQI | GTAC | 1 cut(s) | 694 |
| DdeI | CTNAG | 1 cut(s) | 1017 |
| DinI | GGCGCC | 1 cut(s) | 149 |
| DpnI | GATC | 4 cut(s) | 55, 384, 507, 678 |
| DpnII | GATC | 4 cut(s) | 53, 382, 505, 676 |
| Ecl136II | GAGCTC | 1 cut(s) | 31 |
| Eco130I | CCWWGG | 2 cut(s) | 441, 906 |
| Eco24I | GRGCYC | 1 cut(s) | 33 |
| Eco31I | GGTCTC | 1 cut(s) | 179 |
| Eco47I | GGWCC | 1 cut(s) | 199 |
| Eco53kI | GAGCTC | 1 cut(s) | 31 |
| Eco57I | CTGAAG | 1 cut(s) | 193 |
| Eco72I | CACGTG | 1 cut(s) | 239 |
| Eco81I | CCTNAGG | 1 cut(s) | 1017 |
| EcoICRI | GAGCTC | 1 cut(s) | 31 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 194 |
| EcoRI | GAATTC | 2 cut(s) | 519, 802 |
| EcoRII | CCWGG | 1 cut(s) | 460 |
| EcoT14I | CCWWGG | 2 cut(s) | 441, 906 |
| EcoT22I | ATGCAT | 1 cut(s) | 922 |
| EcoT38I | GRGCYC | 1 cut(s) | 33 |
| EgeI | GGCGCC | 1 cut(s) | 149 |
| EheI | GGCGCC | 1 cut(s) | 149 |
| ErhI | CCWWGG | 2 cut(s) | 441, 906 |
| FaeI | CATG | 7 cut(s) | 105, 206, 307, 518, 721, 748, 965 |
| FatI | CATG | 7 cut(s) | 101, 202, 303, 514, 717, 744, 961 |
| FbaI | TGATCA | 1 cut(s) | 505 |
| FblI | GTMKAC | 1 cut(s) | 14 |
| Fnu4HI | GCNGC | 4 cut(s) | 48, 88, 214, 243 |
| FokI | GGATG | 2 cut(s) | 551, 987 |
| FriOI | GRGCYC | 1 cut(s) | 33 |
| Fsp4HI | GCNGC | 4 cut(s) | 48, 88, 214, 243 |
| FspBI | CTAG | 4 cut(s) | 65, 194, 1031, 1104 |
| GlaI | GCGC | 2 cut(s) | 149, 226 |
| GluI | GCNGC | 4 cut(s) | 48, 88, 214, 243 |
| HaeII | RGCGCY | 1 cut(s) | 151 |
| HapII | CCGG | 4 cut(s) | 23, 120, 222, 318 |
| HgaI | GACGC | 1 cut(s) | 446 |
| HhaI | GCGC | 2 cut(s) | 150, 227 |
| Hin1I | GRCGYC | 2 cut(s) | 148, 438 |
| Hin1II | CATG | 7 cut(s) | 105, 206, 307, 518, 721, 748, 965 |
| Hin6I | GCGC | 2 cut(s) | 148, 225 |
| HinP1I | GCGC | 2 cut(s) | 148, 225 |
| HpaII | CCGG | 4 cut(s) | 23, 120, 222, 318 |
| HphI | GGTGA | 1 cut(s) | 1048 |
| Hpy166II | GTNNAC | 3 cut(s) | 15, 619, 862 |
| Hpy188III | TCNNGA | 7 cut(s) | 194, 413, 571, 680, 807, 840, 962 |
| Hpy8I | GTNNAC | 3 cut(s) | 15, 619, 862 |
| HpyAV | CCTTC | 5 cut(s) | 200, 256, 487, 491, 1096 |
| HpyCH4III | ACNGT | 1 cut(s) | 400 |
| HpyCH4IV | ACGT | 4 cut(s) | 238, 349, 636, 777 |
| HpyCH4V | TGCA | 4 cut(s) | 216, 242, 666, 920 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 222 |
| HpyF3I | CTNAG | 1 cut(s) | 1017 |
| HpySE526I | ACGT | 4 cut(s) | 238, 349, 636, 777 |
| Hsp92I | GRCGYC | 2 cut(s) | 148, 438 |
| Hsp92II | CATG | 7 cut(s) | 105, 206, 307, 518, 721, 748, 965 |
| HspAI | GCGC | 2 cut(s) | 148, 225 |
| KasI | GGCGCC | 1 cut(s) | 147 |
| Ksp22I | TGATCA | 1 cut(s) | 505 |
| Kzo9I | GATC | 4 cut(s) | 53, 382, 505, 676 |
| LmnI | GCTCC | 2 cut(s) | 28, 36 |
| Lsp1109I | GCAGC | 3 cut(s) | 99, 200, 254 |
| LweI | GCATC | 3 cut(s) | 99, 663, 965 |
| MaeI | CTAG | 4 cut(s) | 65, 194, 1031, 1104 |
| MaeII | ACGT | 4 cut(s) | 238, 349, 636, 777 |
| MaeIII | GTNAC | 2 cut(s) | 256, 628 |
| MalI | GATC | 4 cut(s) | 55, 384, 507, 678 |
| MboI | GATC | 4 cut(s) | 53, 382, 505, 676 |
| MboII | GAAGA | 7 cut(s) | 139, 142, 199, 241, 360, 459, 1065 |
| MhlI | GDGCHC | 2 cut(s) | 33, 481 |
| MluCI | AATT | 5 cut(s) | 519, 670, 802, 833, 878 |
| Mly113I | GGCGCC | 1 cut(s) | 148 |
| MlyI | GAGTC | 1 cut(s) | 264 |
| MmeI | TCCRAC | 3 cut(s) | 324, 630, 1047 |
| Mph1103I | ATGCAT | 1 cut(s) | 922 |
| MroXI | GAANNNNTTC | 2 cut(s) | 137, 578 |
| MseI | TTAA | 3 cut(s) | 432, 669, 900 |
| MslI | CAYNNNNRTG | 1 cut(s) | 513 |
| MspA1I | CMGCKG | 1 cut(s) | 213 |
| MspCI | CTTAAG | 1 cut(s) | 431 |
| MspI | CCGG | 4 cut(s) | 23, 120, 222, 318 |
| MspR9I | CCNGG | 3 cut(s) | 222, 319, 462 |
| MvaI | CCWGG | 1 cut(s) | 462 |
| MvnI | CGCG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 222 |
| NarI | GGCGCC | 1 cut(s) | 148 |
| NciI | CCSGG | 2 cut(s) | 222, 319 |
| NdeII | GATC | 4 cut(s) | 53, 382, 505, 676 |
| NlaIII | CATG | 7 cut(s) | 105, 206, 307, 518, 721, 748, 965 |
| NlaIV | GGNNCC | 1 cut(s) | 149 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| NsiI | ATGCAT | 1 cut(s) | 922 |
| NspV | TTCGAA | 1 cut(s) | 1089 |
| PagI | TCATGA | 1 cut(s) | 961 |
| PdmI | GAANNNNTTC | 2 cut(s) | 137, 578 |
| PfeI | GAWTC | 9 cut(s) | 133, 324, 409, 416, 457, 528, 579, 644, 1070 |
| PflFI | GACNNNGTC | 1 cut(s) | 203 |
| PfoI | TCCNGGA | 2 cut(s) | 317, 460 |
| PkrI | GCNGC | 4 cut(s) | 49, 89, 215, 244 |
| Ple19I | CGATCG | 1 cut(s) | 56 |
| PleI | GAGTC | 1 cut(s) | 263 |
| PluTI | GGCGCC | 1 cut(s) | 151 |
| PmaCI | CACGTG | 1 cut(s) | 239 |
| PmlI | CACGTG | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 263 |
| Ppu21I | YACGTR | 1 cut(s) | 239 |
| PshBI | ATTAAT | 1 cut(s) | 669 |
| Psp124BI | GAGCTC | 1 cut(s) | 33 |
| Psp6I | CCWGG | 1 cut(s) | 460 |
| PspCI | CACGTG | 1 cut(s) | 239 |
| PspGI | CCWGG | 1 cut(s) | 460 |
| PspN4I | GGNNCC | 1 cut(s) | 149 |
| PspPI | GGNCC | 1 cut(s) | 199 |
| PstNI | CAGNNNCTG | 1 cut(s) | 93 |
| PsyI | GACNNNGTC | 1 cut(s) | 203 |
| PvuI | CGATCG | 1 cut(s) | 56 |
| PvuII | CAGCTG | 1 cut(s) | 213 |
| RsaI | GTAC | 1 cut(s) | 695 |
| RsaNI | GTAC | 1 cut(s) | 694 |
| RseI | CAYNNNNRTG | 1 cut(s) | 513 |
| SacI | GAGCTC | 1 cut(s) | 33 |
| SaqAI | TTAA | 3 cut(s) | 432, 669, 900 |
| SatI | GCNGC | 4 cut(s) | 48, 88, 214, 243 |
| Sau3AI | GATC | 4 cut(s) | 53, 382, 505, 676 |
| Sau96I | GGNCC | 1 cut(s) | 199 |
| SchI | GAGTC | 1 cut(s) | 264 |
| ScrFI | CCNGG | 3 cut(s) | 222, 319, 462 |
| SduI | GDGCHC | 2 cut(s) | 33, 481 |
| SfaNI | GCATC | 3 cut(s) | 99, 663, 965 |
| SfcI | CTRYAG | 1 cut(s) | 730 |
| SfoI | GGCGCC | 1 cut(s) | 149 |
| SfuI | TTCGAA | 1 cut(s) | 1089 |
| SinI | GGWCC | 1 cut(s) | 199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 513 |
| SmlI | CTYRAG | 1 cut(s) | 431 |
| SmoI | CTYRAG | 1 cut(s) | 431 |
| Sse9I | AATT | 5 cut(s) | 519, 670, 802, 833, 878 |
| SsiI | CCGC | 2 cut(s) | 48, 425 |
| SspDI | GGCGCC | 1 cut(s) | 147 |
| SspMI | CTAG | 4 cut(s) | 65, 194, 1031, 1104 |
| SstI | GAGCTC | 1 cut(s) | 33 |
| StyD4I | CCNGG | 3 cut(s) | 220, 317, 460 |
| StyI | CCWWGG | 2 cut(s) | 441, 906 |
| TaaI | ACNGT | 1 cut(s) | 400 |
| TaiI | ACGT | 4 cut(s) | 241, 352, 639, 780 |
| TaqI | TCGA | 4 cut(s) | 708, 808, 821, 1089 |
| TasI | AATT | 5 cut(s) | 519, 670, 802, 833, 878 |
| TauI | GCSGC | 1 cut(s) | 50 |
| TfiI | GAWTC | 9 cut(s) | 133, 324, 409, 416, 457, 528, 579, 644, 1070 |
| Tru1I | TTAA | 3 cut(s) | 432, 669, 900 |
| Tru9I | TTAA | 3 cut(s) | 432, 669, 900 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| TseI | GCWGC | 3 cut(s) | 87, 213, 242 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 2 cut(s) | 726, 988 |
| TspGWI | ACGGA | 2 cut(s) | 591, 987 |
| TspRI | CASTG | 1 cut(s) | 403 |
| Tth111I | GACNNNGTC | 1 cut(s) | 203 |
| Vha464I | CTTAAG | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 199 |
| VspI | ATTAAT | 1 cut(s) | 669 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 194 |
| XapI | RAATTY | 2 cut(s) | 519, 802 |
| XbaI | TCTAGA | 1 cut(s) | 193 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1034 |
| XmiI | GTMKAC | 1 cut(s) | 14 |
| XmnI | GAANNNNTTC | 2 cut(s) | 137, 578 |
| XspI | CTAG | 4 cut(s) | 65, 194, 1031, 1104 |
| Zsp2I | ATGCAT | 1 cut(s) | 922 |