Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

5464536 .. 5466920

Gene Structure 2385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0069900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGGCATACTTTCAGAGGCGACCTTGTTGCACGAGGGTTTGGGCAGAAGATTGTTGTCTTCCTCAACAAGAACGCGGCCGTTACAGACTATGCGATTCGAGGCATGAAGACATGGTTGACGGAACTAGCAATTGGGGGTGCGACGATACCACTTTTCACCATTGAAGATGACGAAGGAGCTTGGCTAGACCCGTCTTGCAAACACTGCAAAATTGCAGTTAGAGATGAAGCACAAGTAGACACTATTAAGGTGACCAGATTCGACATCCATAGCTGTCATGATGTATATGTAATGGATCATAGTGTTAGATCTAGTACTTCTTTGGAAACATATCGTTGTGAGAAGAATTATCTTGTGGAATCAACTAAGGGAGACCTATTTCTTGTTCGAAGATTTTCTACATGGGAAGGTCTGGAAATAACTCTGCAAGCTACTACAACCTTTAGGGTTCACAAATTTGTGTTCCAAGACAATGATTTCGAGCTGATTGAGGAAACAAATATTGGAGATGACGCTCTATTCGTAGGTGATAGTCATTCGGTGTCTGTTTTAGCTTCAAACTTTCCTATGTGCAAGCCAAACTCCATATACTACACATGTGCAGTACCTAATGAGTATGGTGGTAAAGCATGTGAGATATGTATCTTCAATTTAGAGGACAGAACCATAACAAAACTTGAGTCTCTAAACAATTCGGACAGTTTTGAGCCGCTTTGGATCTCACCTAAGGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

246

Amino Acids

27.89

Weight (kDa)

5.08

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	91 - 218	7.1e-19	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	77, 713
AclWI	GGATC	2 cut(s)	306, 728
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	2 cut(s)	319, 609
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	167, 561, 652
AjuI	GAANNNNNNNTTGG	4 cut(s)	117, 149, 489, 521
AluBI	AGCT	5 cut(s)	182, 276, 434, 487, 557
AluI	AGCT	5 cut(s)	182, 276, 434, 487, 557
Alw26I	GTCTC	2 cut(s)	369, 690
AlwI	GGATC	2 cut(s)	306, 728
AoxI	GGCC	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	6 cut(s)	464, 496, 506, 538, 668, 700
Asp700I	GAANNNNTTC	1 cut(s)	397
AsuHPI	GGTGA	4 cut(s)	151, 265, 542, 717
AsuII	TTCGAA	1 cut(s)	391
AxyI	CCTNAGG	1 cut(s)	729
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	52, 116
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcoDI	GTCTC	2 cut(s)	369, 690
BfaI	CTAG	3 cut(s)	128, 188, 315
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	2 cut(s)	78, 713
BlsI	GCNGC	2 cut(s)	79, 714
BmcAI	AGTACT	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	52, 116
Bpu14I	TTCGAA	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	369
Bse21I	CCTNAGG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	644
BseGI	GGATG	1 cut(s)	267
BseJI	GATNNNNATC	1 cut(s)	644
BseX3I	CGGCCG	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	369, 690
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	298, 311, 720
BspACI	CCGC	2 cut(s)	77, 713
BspANI	GGCC	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	280
BspPI	GGATC	2 cut(s)	306, 728
BspT104I	TTCGAA	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	369
BssMI	GATC	3 cut(s)	298, 311, 720
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	432, 578
BstDEI	CTNAG	2 cut(s)	369, 729
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	301, 314, 723
BstMAI	GTCTC	2 cut(s)	369, 690
BstMBI	GATC	3 cut(s)	298, 311, 720
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNSI	RCATGY	2 cut(s)	603, 636
BstPI	GGTNACC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	52, 116
BstX2I	RGATCY	2 cut(s)	311, 720
BstYI	RGATCY	2 cut(s)	311, 720
BstZI	CGGCCG	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	432, 578
CciI	TCATGA	1 cut(s)	280
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	318, 608
CviAII	CATG	6 cut(s)	106, 114, 281, 405, 600, 633
CviJI	RGCY	9 cut(s)	80, 182, 187, 276, 434, 487, 557, 580, 712
CviKI_1	RGCY	9 cut(s)	80, 182, 187, 276, 434, 487, 557, 580, 712
CviQI	GTAC	2 cut(s)	318, 608
DdeI	CTNAG	2 cut(s)	369, 729
DpnI	GATC	3 cut(s)	300, 313, 722
DpnII	GATC	3 cut(s)	298, 311, 720
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	369
Eco52I	CGGCCG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	729
Eco91I	GGTNACC	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	253
FaeI	CATG	6 cut(s)	109, 117, 284, 408, 603, 636
FatI	CATG	6 cut(s)	105, 113, 280, 404, 599, 632
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	78, 713
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	78, 713
FspBI	CTAG	3 cut(s)	128, 188, 315
GluI	GCNGC	2 cut(s)	78, 713
HaeIII	GGCC	1 cut(s)	80
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	6 cut(s)	109, 117, 284, 408, 603, 636
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	97, 261, 362, 683
HphI	GGTGA	4 cut(s)	151, 265, 542, 717
Hpy166II	GTNNAC	3 cut(s)	120, 241, 454
Hpy188I	TCNGA	2 cut(s)	17, 700
Hpy188III	TCNNGA	2 cut(s)	281, 416
Hpy8I	GTNNAC	3 cut(s)	120, 241, 454
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	170, 404
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4V	TGCA	7 cut(s)	32, 201, 210, 218, 430, 576, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	369, 729
Hsp92II	CATG	6 cut(s)	109, 117, 284, 408, 603, 636
Kzo9I	GATC	3 cut(s)	298, 311, 720
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	2 cut(s)	271, 401
MaeI	CTAG	3 cut(s)	128, 188, 315
MaeIII	GTNAC	2 cut(s)	82, 253
MalI	GATC	3 cut(s)	300, 313, 722
MboI	GATC	3 cut(s)	298, 311, 720
MboII	GAAGA	7 cut(s)	52, 61, 121, 179, 358, 405, 640
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	2 cut(s)	311, 720
MluCI	AATT	6 cut(s)	132, 213, 349, 458, 652, 694
MlyI	GAGTC	1 cut(s)	692
MnlI	CCTC	6 cut(s)	11, 29, 74, 95, 487, 652
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	249, 739
MunI	CAATTG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	3 cut(s)	298, 311, 720
NlaIII	CATG	6 cut(s)	109, 117, 284, 408, 603, 636
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	2 cut(s)	603, 636
NspV	TTCGAA	1 cut(s)	391
PagI	TCATGA	1 cut(s)	280
PciI	ACATGT	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	97, 261, 362
PkrI	GCNGC	2 cut(s)	79, 714
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PscI	ACATGT	1 cut(s)	599
PspEI	GGTNACC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	311, 720
RsaI	GTAC	2 cut(s)	319, 609
RsaNI	GTAC	2 cut(s)	318, 608
SaqAI	TTAA	2 cut(s)	249, 739
SatI	GCNGC	2 cut(s)	78, 713
Sau3AI	GATC	3 cut(s)	298, 311, 720
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	1 cut(s)	692
SfuI	TTCGAA	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	6 cut(s)	132, 213, 349, 458, 652, 694
SsiI	CCGC	2 cut(s)	77, 713
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	128, 188, 315
TaaI	ACNGT	1 cut(s)	704
TaqI	TCGA	4 cut(s)	100, 264, 391, 483
TasI	AATT	6 cut(s)	132, 213, 349, 458, 652, 694
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	2 cut(s)	80, 715
TfiI	GAWTC	3 cut(s)	97, 261, 362
Tru1I	TTAA	2 cut(s)	249, 739
Tru9I	TTAA	2 cut(s)	249, 739
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	122, 243
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	2 cut(s)	603, 636
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	3 cut(s)	128, 188, 315
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.