Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014278.1

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1902

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014278.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 749 bp

atgcctgctgagattgttgattgtgctattctggttatctctgataagggaaatttgggttttgctaaaagtggagatgagaaactcacatggtttagtaatggaggttttgtttttgatgatgttattgtctataagggtcagccatatgtggtggatagcttgagttatgtttttaagattgatgtgtcttcagaagtgatggtgaagatttcatcaaaagtgattggttttggtgggaggaagcatttggtagagtcttgtggagagctttatgtggtcgatatgtattttgatcaagaacaaaataagcaagaaggggctggtgttgagttagatttttctttatttgtccgttggcgtcgtggaagacaccaaagatatcagtttggtgaactcaaggtagttgattttaaggcttgcaagttggaactgttgaatggagagttgggcagatgggttgaagtgaagtgcttggggaattgcatttacttctcagatgaaaacaatgttaatcttgctcttagagaagtaactagaccagagagtttcatgttctacttagaggaccatagcattcagaagttgggatcttccccaagcggttcccagatattttggccacctccaattgagctcggctccacatctggtgaccggattccggagaaagttggccggattctggcggccggtgaccggattccggcgaccagtgaccagattcgggcggccggtgacaggctccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

250

Amino Acids

28.05

Weight (kDa)

5.39

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	3 cut(s)	603, 689, 731
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	4 cut(s)	620, 676, 690, 732
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	361
AfiI	CCNNNNNNNGG	6 cut(s)	664, 685, 699, 706, 727, 741
AgsI	TTSAA	2 cut(s)	439, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	3 cut(s)	162, 271, 637
AluI	AGCT	3 cut(s)	162, 271, 637
Alw21I	GWGCWC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	598
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	4 cut(s)	620, 676, 690, 732
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	5 cut(s)	217, 404, 665, 707, 749
AvaII	GGWCC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	622
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	183, 376
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	2 cut(s)	196, 450
BclI	TGATCA	1 cut(s)	295
BfaI	CTAG	1 cut(s)	537
BisI	GCNGC	2 cut(s)	690, 732
BlsI	GCNGC	2 cut(s)	691, 733
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	3 cut(s)	607, 643, 746
BpiI	GAAGAC	2 cut(s)	183, 376
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpuEI	CTTGAG	2 cut(s)	184, 383
BsaHI	GRCGYC	1 cut(s)	361
BsaWI	WCCGGW	3 cut(s)	657, 664, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	6 cut(s)	664, 685, 699, 706, 727, 741
Bse118I	RCCGGY	2 cut(s)	692, 734
Bse1I	ACTGG	1 cut(s)	714
BseAI	TCCGGA	1 cut(s)	664
BseLI	CCNNNNNNNGG	6 cut(s)	664, 685, 699, 706, 727, 741
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	714
BseX3I	CGGCCG	2 cut(s)	690, 732
Bsh1285I	CGRYCG	2 cut(s)	693, 735
BshFI	GGCC	4 cut(s)	622, 678, 692, 734
BsiEI	CGRYCG	2 cut(s)	693, 735
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	7 cut(s)	658, 665, 679, 693, 700, 707, 735
BslI	CCNNNNNNNGG	6 cut(s)	664, 685, 699, 706, 727, 741
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	4 cut(s)	622, 678, 692, 734
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	295, 590
BspACI	CCGC	3 cut(s)	603, 689, 731
BspANI	GGCC	4 cut(s)	622, 678, 692, 734
BspCNI	CTCAG	1 cut(s)	509
BspEI	TCCGGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	607, 643, 746
BspPI	GGATC	1 cut(s)	598
BsrFI	RCCGGY	2 cut(s)	692, 734
BsrI	ACTGG	1 cut(s)	714
BssAI	RCCGGY	2 cut(s)	692, 734
BssMI	GATC	2 cut(s)	295, 590
BssNI	GRCGYC	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	6, 421
BstDEI	CTNAG	4 cut(s)	9, 496, 524, 562
BstEII	GGTNACC	2 cut(s)	653, 695
BstKTI	GATC	2 cut(s)	298, 593
BstMBI	GATC	2 cut(s)	295, 590
BstMCI	CGRYCG	2 cut(s)	693, 735
BstPI	GGTNACC	2 cut(s)	653, 695
BstV2I	GAAGAC	2 cut(s)	183, 376
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BstZI	CGGCCG	2 cut(s)	690, 732
BsuRI	GGCC	4 cut(s)	622, 678, 692, 734
BtsIMutI	CAGTG	1 cut(s)	721
Cac8I	GCNNGC	2 cut(s)	6, 421
Cfr10I	RCCGGY	2 cut(s)	692, 734
Cfr13I	GGNCC	1 cut(s)	568
CseI	GACGC	1 cut(s)	350
CviAII	CATG	2 cut(s)	90, 553
DdeI	CTNAG	4 cut(s)	9, 496, 524, 562
DpnI	GATC	2 cut(s)	297, 592
DpnII	GATC	2 cut(s)	295, 590
EaeI	YGGCCR	4 cut(s)	620, 676, 690, 732
EagI	CGGCCG	2 cut(s)	690, 732
Ecl136II	GAGCTC	1 cut(s)	637
EclXI	CGGCCG	2 cut(s)	690, 732
Eco24I	GRGCYC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	568
Eco52I	CGGCCG	2 cut(s)	690, 732
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	177
Eco91I	GGTNACC	2 cut(s)	653, 695
EcoICRI	GAGCTC	1 cut(s)	637
EcoO65I	GGTNACC	2 cut(s)	653, 695
EcoRV	GATATC	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	639
FaeI	CATG	2 cut(s)	93, 556
FaiI	YATR	9 cut(s)	91, 135, 148, 150, 171, 276, 287, 554, 573
FatI	CATG	2 cut(s)	89, 552
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	690, 732
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	690, 732
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	2 cut(s)	690, 732
HaeIII	GGCC	4 cut(s)	622, 678, 692, 734
HapII	CCGG	7 cut(s)	658, 665, 679, 693, 700, 707, 735
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	93, 556
HinfI	GANTC	5 cut(s)	257, 661, 682, 703, 724
HpaII	CCGG	7 cut(s)	658, 665, 679, 693, 700, 707, 735
HphI	GGTGA	5 cut(s)	217, 404, 665, 707, 749
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	4 cut(s)	43, 196, 499, 582
Hpy188III	TCNNGA	2 cut(s)	299, 665
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	2 cut(s)	423, 486
HpyF3I	CTNAG	4 cut(s)	9, 496, 524, 562
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	93, 556
Kpn2I	TCCGGA	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	295, 590
LmnI	GCTCC	1 cut(s)	647
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	5 cut(s)	532, 653, 695, 716, 737
MalI	GATC	2 cut(s)	297, 592
MboI	GATC	2 cut(s)	295, 590
MboII	GAAGA	4 cut(s)	183, 220, 381, 585
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	639
MlsI	TGGCCA	1 cut(s)	622
MluCI	AATT	3 cut(s)	52, 481, 630
MluNI	TGGCCA	1 cut(s)	622
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	4 cut(s)	98, 234, 559, 636
Mox20I	TGGCCA	1 cut(s)	622
MroI	TCCGGA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	622
MseI	TTAA	3 cut(s)	177, 414, 513
Msp20I	TGGCCA	1 cut(s)	622
MspI	CCGG	7 cut(s)	658, 665, 679, 693, 700, 707, 735
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	576
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	2 cut(s)	295, 590
NlaIII	CATG	2 cut(s)	93, 556
NlaIV	GGNNCC	3 cut(s)	607, 643, 746
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	4 cut(s)	653, 695, 716, 737
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	4 cut(s)	661, 682, 703, 724
PkrI	GCNGC	2 cut(s)	691, 733
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	639
PspEI	GGTNACC	2 cut(s)	653, 695
PspN4I	GGNNCC	3 cut(s)	607, 643, 746
PspPI	GGNCC	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	177, 414, 513
SatI	GCNGC	2 cut(s)	690, 732
Sau3AI	GATC	2 cut(s)	295, 590
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	6 cut(s)	109, 164, 273, 405, 628, 639
SinI	GGWCC	1 cut(s)	568
SmlI	CTYRAG	2 cut(s)	163, 398
SmoI	CTYRAG	2 cut(s)	163, 398
Sse9I	AATT	3 cut(s)	52, 481, 630
SsiI	CCGC	3 cut(s)	603, 689, 731
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	52, 481, 630
TauI	GCSGC	2 cut(s)	692, 734
TfiI	GAWTC	4 cut(s)	661, 682, 703, 724
Tru1I	TTAA	3 cut(s)	177, 414, 513
Tru9I	TTAA	3 cut(s)	177, 414, 513
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	4 cut(s)	653, 695, 716, 737
Tsp45I	GTSAC	4 cut(s)	653, 695, 716, 737
TspDTI	ATGAA	3 cut(s)	204, 516, 541
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.