Rorug05G0482400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000246
Physical Location & Seq
Reverse (-)
66375480 .. 66376714
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0482400.1

Sequence Viewer

Length: 1023 bp
ATGGAAATACACCATGGTGGTTACTTTGACAAGCTGCTGGATGGTACGAAGAAGTATAGGGTGGCTAGGTTCAACAAGGATGGTGGGAAGATTTGGCTAGATGGGTTGGATCCTGACATGATTGCATGGACAGAGTTCGGGAATATAGCCTGGGATCTTGGGTACAGGGAGAAGCCCATTTCATACTACTTCAAGATTCCAAGGACTACTTGCAATGAGGGTTGGGTGCCGATTAGGAATGATGCAGATGCATTGGAGATGATTAAATTGATTCCACTTAAGACCAGGCAAATCAGTGTGTACATAACTGGTGGTGGGAGGAGAAGGAAAGCAGAGGCTGAAGCTGATGACTTGGTGCCAACTGACCCAAATTGGGAGAATCCCTTGAATACGGTGATTGGTGAAGAGAGAAAAAGAATGGAGCATGAAAGCAACCTATTTGGGACTCAGTTAAATAGGGAGAGTGATGTAGATGGCAGTTCTAAGGGAATAAATAGGGTTGGTGCAAATGTTAATGCACATGGGGGGAGGGTTAGGCATGAAGGAGGGCCAGCTGATGTTATAAATTTGGATTCAGATAGTGATGTGGATGTGGGGGAGGGTGTGCAGAGGCAAAGTGAAGGAACTTTTGGAGGGCTTAGTGACTTGGTCCTCAACTTGTTTGCTTCACAATGCGAGGTGAGGAAGGGAGGTTTTGTTACTGACCAAACAAGACCTGAGATTGGGTCAGTTGTTGAAGAGGCTGCAGCCCAAACAAGACCAGATGTTGGGCCAATTTTTGAAGAGGCTACAGCCCAAACAAGACCAGATGTTGAAGCACCTGCACCAAGTGTTGAAGAGGCAGGGCCAAGTGTTGAAGCTGTTGACACCAATGAACCAATTGTTGGGCCTAGAGAAAAAGGGAAGAAAACAGGCAATGTGAGTAAGGGAGCAGAGGGTAAAGACAAGGGGAAGAGGTTGCAGCAAGCAGATAAAGGGAAGAAGGCTGCTAGTGAAACAACAGCCAAGAAGAGTAGATCTTAG

Protein Analysis

340

Amino Acids

37.13

Weight (kDa)

5.41

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 2 - 102 2.3e-09 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AarI CACCTGC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 829
AccB1I GGYRCC 2 cut(s) 226, 355
AccB7I CCANNNNNTGG 2 cut(s) 767, 884
AclWI GGATC 3 cut(s) 104, 117, 162
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 830
AfaI GTAC 3 cut(s) 46, 164, 302
AfiI CCNNNNNNNGG 4 cut(s) 373, 722, 767, 884
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 8 cut(s) 73, 193, 388, 737, 782, 815, 836, 857
AjnI CCWGG 2 cut(s) 149, 284
AjuI GAANNNNNNNTTGG 4 cut(s) 612, 644, 867, 899
AleI CACNNNNGTG 1 cut(s) 15
AluBI AGCT 4 cut(s) 34, 344, 554, 860
AluI AGCT 4 cut(s) 34, 344, 554, 860
AlwI GGATC 3 cut(s) 104, 117, 162
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 4 cut(s) 548, 770, 845, 887
ApeKI GCWGC 5 cut(s) 34, 743, 746, 961, 986
ApoI RAATTY 1 cut(s) 565
AspS9I GGNCC 5 cut(s) 548, 649, 770, 845, 887
AsuHPI GGTGA 3 cut(s) 406, 413, 691
AvaII GGWCC 1 cut(s) 649
BamHI GGATCC 1 cut(s) 109
BanI GGYRCC 2 cut(s) 226, 355
BbvI GCAGC 5 cut(s) 21, 730, 758, 973, 973
BccI CCATC 4 cut(s) 35, 74, 95, 467
BciT130I CCWGG 2 cut(s) 151, 286
BfaI CTAG 4 cut(s) 66, 98, 891, 990
BfmI CTRYAG 2 cut(s) 744, 789
BfrI CTTAAG 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 829
BglII AGATCT 1 cut(s) 1016
BisI GCNGC 5 cut(s) 35, 744, 747, 962, 987
BlsI GCNGC 5 cut(s) 36, 745, 748, 963, 988
Bme1390I CCNGG 2 cut(s) 151, 286
Bme18I GGWCC 1 cut(s) 649
BmgT120I GGNCC 5 cut(s) 548, 649, 770, 845, 887
BmiI GGNNCC 3 cut(s) 111, 228, 357
BmrFI CCNGG 2 cut(s) 151, 286
BmsI GCATC 2 cut(s) 232, 238
BsaJI CCNNGG 3 cut(s) 13, 150, 200
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 722, 767, 884
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 2 cut(s) 220, 922
BseBI CCWGG 2 cut(s) 151, 286
BseDI CCNNGG 3 cut(s) 13, 150, 200
BseGI GGATG 3 cut(s) 46, 85, 595
BseLI CCNNNNNNNGG 4 cut(s) 373, 722, 767, 884
BseMI GCAATG 2 cut(s) 220, 922
BseMII CTCAG 2 cut(s) 461, 708
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 5 cut(s) 21, 730, 758, 973, 973
BsgI GTGCAG 2 cut(s) 626, 807
BshFI GGCC 4 cut(s) 550, 772, 847, 889
BshNI GGYRCC 2 cut(s) 226, 355
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 4 cut(s) 373, 722, 767, 884
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 4 cut(s) 550, 772, 847, 889
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 3 cut(s) 109, 154, 1016
Bsp19I CCATGG 1 cut(s) 13
BspANI GGCC 4 cut(s) 550, 772, 847, 889
BspCNI CTCAG 2 cut(s) 460, 709
BspLI GGNNCC 3 cut(s) 111, 228, 357
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 3 cut(s) 104, 117, 162
BspT107I GGYRCC 2 cut(s) 226, 355
BspTI CTTAAG 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 220, 922
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 13, 150, 200
BssMI GATC 3 cut(s) 109, 154, 1016
BssT1I CCWWGG 2 cut(s) 13, 200
Bst2UI CCWGG 2 cut(s) 151, 286
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 6 cut(s) 399, 732, 777, 831, 947, 1004
BstAFI CTTAAG 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 552, 966
BstDEI CTNAG 5 cut(s) 447, 483, 638, 717, 1020
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 3 cut(s) 46, 85, 595
BstKTI GATC 3 cut(s) 112, 157, 1019
BstMBI GATC 3 cut(s) 109, 154, 1016
BstNI CCWGG 2 cut(s) 151, 286
BstSCI CCNGG 2 cut(s) 149, 284
BstSFI CTRYAG 2 cut(s) 744, 789
BstV1I GCAGC 5 cut(s) 21, 730, 758, 973, 973
BstX2I RGATCY 3 cut(s) 109, 154, 1016
BstYI RGATCY 3 cut(s) 109, 154, 1016
BsuRI GGCC 4 cut(s) 550, 772, 847, 889
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 3 cut(s) 46, 85, 595
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 2 cut(s) 552, 966
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 5 cut(s) 548, 649, 770, 845, 887
Csp6I GTAC 3 cut(s) 45, 163, 301
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 6 cut(s) 14, 118, 126, 425, 521, 539
CviQI GTAC 3 cut(s) 45, 163, 301
DdeI CTNAG 5 cut(s) 447, 483, 638, 717, 1020
DpnI GATC 3 cut(s) 111, 156, 1018
DpnII GATC 3 cut(s) 109, 154, 1016
DraIII CACNNNGTG 1 cut(s) 830
Eam1104I CTCTTC 6 cut(s) 399, 732, 777, 831, 947, 1004
EarI CTCTTC 6 cut(s) 399, 732, 777, 831, 947, 1004
Eco130I CCWWGG 2 cut(s) 13, 200
Eco47I GGWCC 1 cut(s) 649
Eco57I CTGAAG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 149, 284
EcoT14I CCWWGG 2 cut(s) 13, 200
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 2 cut(s) 13, 200
FaeI CATG 6 cut(s) 17, 121, 129, 428, 524, 542
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FaqI GGGAC 1 cut(s) 457
FatI CATG 6 cut(s) 13, 117, 125, 424, 520, 538
Fnu4HI GCNGC 5 cut(s) 35, 744, 747, 962, 987
FokI GGATG 3 cut(s) 53, 92, 602
Fsp4HI GCNGC 5 cut(s) 35, 744, 747, 962, 987
FspBI CTAG 4 cut(s) 66, 98, 891, 990
GluI GCNGC 5 cut(s) 35, 744, 747, 962, 987
HaeIII GGCC 4 cut(s) 550, 772, 847, 889
Hin1II CATG 6 cut(s) 17, 121, 129, 428, 524, 542
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 5 cut(s) 196, 271, 379, 445, 572
HphI GGTGA 3 cut(s) 406, 413, 691
Hpy166II GTNNAC 2 cut(s) 301, 865
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 3 cut(s) 113, 139, 193
Hpy8I GTNNAC 2 cut(s) 301, 865
HpyAV CCTTC 5 cut(s) 318, 536, 614, 679, 976
HpyCH4III ACNGT 1 cut(s) 394
HpyF3I CTNAG 5 cut(s) 447, 483, 638, 717, 1020
Hsp92II CATG 6 cut(s) 17, 121, 129, 428, 524, 542
Kzo9I GATC 3 cut(s) 109, 154, 1016
LmnI GCTCC 2 cut(s) 421, 929
Lsp1109I GCAGC 5 cut(s) 21, 730, 758, 973, 973
LweI GCATC 2 cut(s) 232, 238
MaeI CTAG 4 cut(s) 66, 98, 891, 990
MaeIII GTNAC 3 cut(s) 20, 641, 697
MalI GATC 3 cut(s) 111, 156, 1018
MboI GATC 3 cut(s) 109, 154, 1016
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 3 cut(s) 109, 154, 1016
MluCI AATT 5 cut(s) 266, 370, 565, 774, 879
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 253
MseI TTAA 4 cut(s) 264, 279, 452, 513
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 278
MspR9I CCNGG 2 cut(s) 151, 286
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 2 cut(s) 151, 286
NcoI CCATGG 1 cut(s) 13
NdeII GATC 3 cut(s) 109, 154, 1016
NlaIII CATG 6 cut(s) 17, 121, 129, 428, 524, 542
NlaIV GGNNCC 3 cut(s) 111, 228, 357
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 15
PaqCI CACCTGC 1 cut(s) 829
PfeI GAWTC 4 cut(s) 196, 271, 379, 572
PflFI GACNNNGTC 1 cut(s) 647
PflMI CCANNNNNTGG 2 cut(s) 767, 884
PkrI GCNGC 5 cut(s) 36, 745, 748, 963, 988
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 149, 284
PspGI CCWGG 2 cut(s) 149, 284
PspN4I GGNNCC 3 cut(s) 111, 228, 357
PspPI GGNCC 5 cut(s) 548, 649, 770, 845, 887
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 3 cut(s) 109, 154, 1016
PsyI GACNNNGTC 1 cut(s) 647
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 3 cut(s) 46, 164, 302
RsaNI GTAC 3 cut(s) 45, 163, 301
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 4 cut(s) 264, 279, 452, 513
SatI GCNGC 5 cut(s) 35, 744, 747, 962, 987
Sau3AI GATC 3 cut(s) 109, 154, 1016
Sau96I GGNCC 5 cut(s) 548, 649, 770, 845, 887
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 2 cut(s) 151, 286
SfaNI GCATC 2 cut(s) 232, 238
SfcI CTRYAG 2 cut(s) 744, 789
SinI GGWCC 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 5 cut(s) 266, 370, 565, 774, 879
SspMI CTAG 4 cut(s) 66, 98, 891, 990
StyD4I CCNGG 2 cut(s) 149, 284
StyI CCWWGG 2 cut(s) 13, 200
TaaI ACNGT 1 cut(s) 394
TasI AATT 5 cut(s) 266, 370, 565, 774, 879
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 4 cut(s) 196, 271, 379, 572
Tru1I TTAA 4 cut(s) 264, 279, 452, 513
Tru9I TTAA 4 cut(s) 264, 279, 452, 513
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 5 cut(s) 34, 743, 746, 961, 986
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 4 cut(s) 171, 441, 555, 888
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 647
Van91I CCANNNNNTGG 2 cut(s) 767, 884
Vha464I CTTAAG 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 649
XapI RAATTY 1 cut(s) 565
XspI CTAG 4 cut(s) 66, 98, 891, 990
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.