Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

19415535 .. 19416314

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1235900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATGCAAAGAAGTTGAATGATTGTGGTATTTTTATGATTTGCAATGGCGGAAAGTTGGGTTTCTTGAGATTCGGGGATGAGAAATGGACCCATGTGGATGAACAAAACTCACATTATGATGATCTTATTGTGTATAAGGGTCAATGCTATGTTGTTGATAGATGGGGAACAGTTTCATGGGTCAATTCGGATTTGAATGTGATCCAATTTTCGCCTCCGTTATGTGGGTTTGGCGGGCGGAAGCATTTGGTTGAGTCCCTTGGCGATCTCTTCGTTGTTGATCGGTACCTTGACAAGTGTGAAATGGAAGGGTTACCAGAGCACAATGTTGAGAATGAAAATGTTAGTGTTTTTGGCCCTAATTTTCAAGCTCCTCCTCCTCCTTTCGCCGCTTCTGTTGACGGCAAGGCTGTTGATTTTAAAGTTTATAGGCTGGATCAAGAATGGGGTACGTGGGTTCAAATGAAAAACTTGGGAGATCAAGTGTTTATTTTGAGCAATGATGGGTCTTTCGCCGTCTCCACCAGAGACGTTGGTAGAGTGAAGGGAAATTGCATTTTATTCACTGATCAAAAGCTTCCTCATTTACACGGAATTGGGGGATCAAAAAGGCCTAACACTCGCGTGTTCATGCTAAAGGGTGACAGCATCATTCGGGACGGACATGCTTTGTCCGCCTTTAACAAAATGCTCCATCCACCATCCAGTTGGCTCCGCCCTGTTCTTGGTTTCCGTCGGCATCGGCTTGCTGACTGGGATAATGCTGACAGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

260

Amino Acids

29.22

Weight (kDa)

6.14

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	7 - 200	1.8e-30	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AccII	CGCG	1 cut(s)	627
AciI	CCGC	6 cut(s)	51, 237, 241, 393, 678, 718
AclWI	GGATC	3 cut(s)	199, 447, 613
AfaI	GTAC	2 cut(s)	290, 454
AfiI	CCNNNNNNNGG	2 cut(s)	227, 728
AgsI	TTSAA	4 cut(s)	19, 199, 371, 464
AleI	CACNNNNGTG	1 cut(s)	626
AluBI	AGCT	2 cut(s)	374, 580
AluI	AGCT	2 cut(s)	374, 580
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	525, 526
AlwI	GGATC	3 cut(s)	199, 447, 613
AoxI	GGCC	2 cut(s)	358, 614
Asp700I	GAANNNNTTC	1 cut(s)	175
Asp718I	GGTACC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	90, 359
AsuHPI	GGTGA	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	90
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BanI	GGYRCC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	4 cut(s)	159, 500, 705, 712
BceAI	ACGGC	2 cut(s)	421, 503
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	525, 526
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	90, 359
BmiI	GGNNCC	3 cut(s)	92, 290, 716
BmrI	ACTGGG	1 cut(s)	766
BmsI	GCATC	2 cut(s)	660, 751
BmuI	ACTGGG	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 728
Bse1I	ACTGG	2 cut(s)	708, 761
Bse3DI	GCAATG	2 cut(s)	52, 508
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	5 cut(s)	10, 85, 106, 697, 704
BseLI	CCNNNNNNNGG	2 cut(s)	227, 728
BseMI	GCAATG	2 cut(s)	52, 508
BseNI	ACTGG	2 cut(s)	708, 761
BseRI	GAGGAG	3 cut(s)	366, 369, 372
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	360, 616
BshNI	GGYRCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	244, 674
BslI	CCNNNNNNNGG	2 cut(s)	227, 728
BsmAI	GTCTC	2 cut(s)	525, 526
BsmBI	CGTCTC	2 cut(s)	525, 526
BsmFI	GGGAC	2 cut(s)	244, 674
BsnI	GGCC	2 cut(s)	360, 616
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
BspACI	CCGC	6 cut(s)	51, 237, 241, 393, 678, 718
BspANI	GGCC	2 cut(s)	360, 616
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	3 cut(s)	92, 290, 716
BspPI	GGATC	3 cut(s)	199, 447, 613
BspT107I	GGYRCC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	52, 508
BsrI	ACTGG	2 cut(s)	708, 761
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	239, 750
BstEII	GGTNACC	1 cut(s)	315
BstF5I	GGATG	5 cut(s)	10, 85, 106, 697, 704
BstFNI	CGCG	1 cut(s)	627
BstKTI	GATC	8 cut(s)	127, 207, 271, 286, 442, 484, 574, 608
BstMAI	GTCTC	2 cut(s)	525, 526
BstMBI	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	671
BstPI	GGTNACC	1 cut(s)	315
BstUI	CGCG	1 cut(s)	627
BstXI	CCANNNNNNTGG	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	360, 616
BtsCI	GGATG	5 cut(s)	10, 85, 106, 697, 704
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	239, 750
Cfr13I	GGNCC	2 cut(s)	90, 359
Csp6I	GTAC	2 cut(s)	289, 453
CviAII	CATG	4 cut(s)	95, 180, 634, 668
CviJI	RGCY	8 cut(s)	360, 374, 413, 436, 580, 616, 715, 748
CviKI_1	RGCY	8 cut(s)	360, 374, 413, 436, 580, 616, 715, 748
CviQI	GTAC	2 cut(s)	289, 453
DpnI	GATC	8 cut(s)	126, 206, 270, 285, 441, 483, 573, 607
DpnII	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
DraI	TTTAAA	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	4 cut(s)	66, 256, 667, 707
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	315
EcoO65I	GGTNACC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	2 cut(s)	525, 526
FaeI	CATG	4 cut(s)	98, 183, 637, 671
FaqI	GGGAC	2 cut(s)	244, 674
FatI	CATG	4 cut(s)	94, 179, 633, 667
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	5 cut(s)	17, 92, 113, 684, 691
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	360, 616
Hin1II	CATG	4 cut(s)	98, 183, 637, 671
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	72, 257
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	67, 443, 659
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	305, 541
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	455, 534
HpyCH4V	TGCA	3 cut(s)	8, 45, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpySE526I	ACGT	2 cut(s)	455, 534
Hsp92II	CATG	4 cut(s)	98, 183, 637, 671
KpnI	GGTACC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
LmnI	GCTCC	3 cut(s)	379, 699, 720
LpnPI	CCDG	6 cut(s)	333, 422, 541, 721, 735, 742
LweI	GCATC	2 cut(s)	660, 751
MaeII	ACGT	2 cut(s)	455, 534
MaeIII	GTNAC	2 cut(s)	315, 644
MalI	GATC	8 cut(s)	126, 206, 270, 285, 441, 483, 573, 607
MboI	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	5 cut(s)	187, 209, 364, 553, 597
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	5 cut(s)	228, 387, 390, 393, 594
MroXI	GAANNNNTTC	1 cut(s)	175
MseI	TTAA	2 cut(s)	423, 684
MslI	CAYNNNNRTG	3 cut(s)	99, 120, 626
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeII	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
NlaIII	CATG	4 cut(s)	98, 183, 637, 671
NlaIV	GGNNCC	3 cut(s)	92, 290, 716
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	456
PspEI	GGTNACC	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	92, 290, 716
PspPI	GGNCC	2 cut(s)	90, 359
RsaI	GTAC	2 cut(s)	290, 454
RsaNI	GTAC	2 cut(s)	289, 453
RseI	CAYNNNNRTG	3 cut(s)	99, 120, 626
SaqAI	TTAA	2 cut(s)	423, 684
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	8 cut(s)	124, 204, 268, 283, 439, 481, 571, 605
Sau96I	GGNCC	2 cut(s)	90, 359
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	5 cut(s)	294, 376, 458, 537, 582
SfaNI	GCATC	2 cut(s)	660, 751
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	3 cut(s)	99, 120, 626
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	5 cut(s)	187, 209, 364, 553, 597
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	6 cut(s)	51, 237, 241, 393, 678, 718
StuI	AGGCCT	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	458, 537
TasI	AATT	5 cut(s)	187, 209, 364, 553, 597
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	423, 684
Tru9I	TTAA	2 cut(s)	423, 684
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	117, 168, 354, 482, 622
TspGWI	ACGGA	4 cut(s)	210, 609, 678, 725
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.