Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307469.1

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 514

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcacaggcccaagctacaatggtgcgatctcccaaaggagctctggcagatgatcggaaaattcctcgaaacccgcgtcgacgttctccgattccgcagcgtctgctctctctggcgctccgccgtccgtcctctagacccgatcgactctcctcctctccccctcggattccctcacgccggcgaagagcctcccgccgccgtctcccagaccaccgtctaccgcctgcagtcgctgatcgccggcgaaggttccgatgagtcgctgccgttcttggtgaagttggaggaggccaattgcggcgaaatgcgtctgcttcatccgatcaccaactggcagctcaggttatccctcactccgactataaaagaattcaacttgttggattatagggttgtggagttggtgaaactgtattctctgaaatatgcctacaccagaattgatgttacttatgtgaacagagtggtggttttgcctgctgatcatttgagtttgggggaggatttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

171

Amino Acids

19.65

Weight (kDa)

6.09

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	81, 222
AccII	CGCG	1 cut(s)	78
AciI	CCGC	7 cut(s)	76, 97, 123, 198, 201, 226, 303
AcsI	RAATTY	2 cut(s)	62, 374
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	3 cut(s)	16, 43, 343
AluI	AGCT	3 cut(s)	16, 43, 343
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	211
AlwNI	CAGNNNCTG	2 cut(s)	105, 238
AoxI	GGCC	2 cut(s)	8, 294
ApeKI	GCWGC	3 cut(s)	99, 268, 340
ApoI	RAATTY	2 cut(s)	62, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	292, 322, 421
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	111, 255, 352
BceAI	ACGGC	3 cut(s)	110, 188, 256
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	5 cut(s)	100, 201, 269, 304, 341
BlsI	GCNGC	5 cut(s)	101, 202, 270, 305, 342
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	256
BoxI	GACNNNNGTC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	2 cut(s)	182, 245
Bse1I	ACTGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	3 cut(s)	144, 147, 305
BseXI	GCAGC	3 cut(s)	111, 255, 352
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	10, 296
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	183, 246
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	10, 296
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
BspACI	CCGC	7 cut(s)	76, 97, 123, 198, 201, 226, 303
BspANI	GGCC	2 cut(s)	10, 296
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	182, 245
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	2 cut(s)	182, 245
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
Bst4CI	ACNGT	2 cut(s)	220, 417
Bst6I	CTCTTC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	184, 230, 247, 483
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	6 cut(s)	31, 57, 147, 243, 330, 490
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	111, 255, 352
BsuRI	GGCC	2 cut(s)	10, 296
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	4 cut(s)	184, 230, 247, 483
CaiI	CAGNNNCTG	2 cut(s)	105, 238
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	2 cut(s)	182, 245
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	3 cut(s)	67, 91, 302
CviJI	RGCY	6 cut(s)	10, 16, 43, 193, 296, 343
CviKI_1	RGCY	6 cut(s)	10, 16, 43, 193, 296, 343
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	6 cut(s)	30, 56, 146, 242, 329, 489
DpnII	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	211
FaiI	YATR	4 cut(s)	368, 393, 432, 459
FauI	CCCGC	2 cut(s)	83, 205
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	2 cut(s)	81, 222
Fnu4HI	GCNGC	5 cut(s)	100, 201, 269, 304, 341
FokI	GGATG	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	5 cut(s)	100, 201, 269, 304, 341
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	5 cut(s)	100, 201, 269, 304, 341
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	10, 296
HapII	CCGG	2 cut(s)	183, 246
HgaI	GACGC	3 cut(s)	67, 91, 302
HhaI	GCGC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	4 cut(s)	93, 149, 171, 263
HpaII	CCGG	2 cut(s)	183, 246
HphI	GGTGA	3 cut(s)	292, 322, 421
Hpy166II	GTNNAC	3 cut(s)	82, 223, 463
Hpy188I	TCNGA	7 cut(s)	59, 92, 170, 259, 327, 363, 426
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	3 cut(s)	82, 223, 463
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	220, 417
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	4, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	84
HspAI	GCGC	1 cut(s)	118
KroI	GCCGGC	2 cut(s)	182, 245
KroNI	GCCGGC	2 cut(s)	184, 247
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	40, 125
Lsp1109I	GCAGC	3 cut(s)	111, 255, 352
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	6 cut(s)	30, 56, 146, 242, 329, 489
MboI	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
MboII	GAAGA	1 cut(s)	200
MfeI	CAATTG	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	4 cut(s)	62, 298, 374, 444
MlyI	GAGTC	2 cut(s)	143, 272
MmeI	TCCRAC	3 cut(s)	267, 366, 386
MreI	CGCCGGCG	2 cut(s)	182, 245
MroNI	GCCGGC	2 cut(s)	182, 245
MspI	CCGG	2 cut(s)	183, 246
MunI	CAATTG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	105
NaeI	GCCGGC	2 cut(s)	184, 247
NdeII	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
NgoMIV	GCCGGC	2 cut(s)	182, 245
NlaIV	GGNNCC	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdiI	GCCGGC	2 cut(s)	184, 247
PfeI	GAWTC	2 cut(s)	93, 171
PkrI	GCNGC	5 cut(s)	101, 202, 270, 305, 342
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	2 cut(s)	143, 271
PpsI	GAGTC	2 cut(s)	143, 271
PshAI	GACNNNNGTC	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	234
PstNI	CAGNNNCTG	2 cut(s)	105, 238
PvuI	CGATCG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	183
SatI	GCNGC	5 cut(s)	100, 201, 269, 304, 341
Sau3AI	GATC	6 cut(s)	28, 54, 144, 240, 327, 487
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	2 cut(s)	143, 272
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	6 cut(s)	18, 45, 87, 256, 345, 350
SfcI	CTRYAG	1 cut(s)	230
SgrAI	CRCCGGYG	2 cut(s)	182, 245
SgrDI	CGTCGACG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	62, 298, 374, 444
SsiI	CCGC	7 cut(s)	76, 97, 123, 198, 201, 226, 303
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	220, 417
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	69, 81, 147
TasI	AATT	4 cut(s)	62, 298, 374, 444
TauI	GCSGC	2 cut(s)	203, 306
TfiI	GAWTC	2 cut(s)	93, 171
TseI	GCWGC	3 cut(s)	99, 268, 340
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	119
XapI	RAATTY	2 cut(s)	62, 374
XbaI	TCTAGA	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	2 cut(s)	81, 222
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.