Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

9816726 .. 9817265

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATATCACCGTCGACTGGTCCAATATTCCGGTCGAACTCTGGCCACTGATCGGAGAAAAGCTCAAACTCCACATCGAGTCTCTCCGATTCCGCAGCGTTTGTCATTCATGGCGTTCTTGTTTGCCTCGCTTCCACCCTTCCCTTCCTCCGAAATTCCCTCTCCCATTCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTACCTCCTCCAAACCCCCTCCACGTCATCACTGGCGCCGCCGCCGTCTGGAGGTTGGTTGGTCAAGGTCGAAGAGTGCGACAGAATGCTTCTTCGGAATCCGATCACCTCCCGGCGAATCAGATACATCCATGGCTCTGGTTCTGTTGGTGGTTTAAAGAAAGTGATTTTAATGCGTGTTGAGATTGTTGATTGTGCTATTCTGGTTGTTATGATAGTCAAACAGGGTCCCTATGTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

9.23

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	15, 210
AciI	CCGC	3 cut(s)	94, 248, 251
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	18, 53, 257, 260
AjiI	CACGTC	1 cut(s)	234
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	21, 179, 437
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	3 cut(s)	21, 179, 437
BalI	TGGCCA	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	451
BfoI	RGCGCY	1 cut(s)	248
BisI	GCNGC	3 cut(s)	97, 248, 251
BlsI	GCNGC	3 cut(s)	98, 249, 252
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	3 cut(s)	21, 179, 437
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	21, 179, 437
BmiI	GGNNCC	4 cut(s)	181, 246, 438, 439
BmrFI	CCNGG	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 53, 257, 260
Bse1I	ACTGG	2 cut(s)	23, 246
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	4 cut(s)	18, 53, 257, 260
BseNI	ACTGG	2 cut(s)	23, 246
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	32, 322
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	4 cut(s)	18, 53, 257, 260
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	51, 312
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	3 cut(s)	94, 248, 251
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	4 cut(s)	181, 246, 438, 439
BspT107I	GGYRCC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	23, 246
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	51, 312
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	13, 208
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	54, 315
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	51, 312
BstMCI	CGRYCG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	47, 239
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	21, 179, 437
CviAII	CATG	2 cut(s)	111, 341
CviJI	RGCY	3 cut(s)	46, 64, 345
CviKI_1	RGCY	3 cut(s)	46, 64, 345
DinI	GGCGCC	1 cut(s)	246
DpnI	GATC	2 cut(s)	53, 314
DpnII	GATC	2 cut(s)	51, 312
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	3 cut(s)	21, 179, 437
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	340
EgeI	GGCGCC	1 cut(s)	246
EheI	GGCGCC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	114, 344
FaiI	YATR	4 cut(s)	112, 342, 422, 444
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	110, 340
FblI	GTMKAC	2 cut(s)	15, 210
Fnu4HI	GCNGC	3 cut(s)	97, 248, 251
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	97, 248, 251
FspBI	CTAG	1 cut(s)	451
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	97, 248, 251
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	32, 322
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	114, 344
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	2 cut(s)	16, 448
HindII	GTYRAC	2 cut(s)	16, 448
HinfI	GANTC	4 cut(s)	80, 90, 307, 327
HpaII	CCGG	2 cut(s)	32, 322
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	16, 211, 448
Hpy188I	TCNGA	7 cut(s)	56, 89, 153, 175, 306, 312, 332
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	3 cut(s)	16, 211, 448
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	150, 155, 199
HpyCH4III	ACNGT	2 cut(s)	13, 208
HpyCH4IV	ACGT	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	114, 344
HspAI	GCGC	1 cut(s)	245
KasI	GGCGCC	1 cut(s)	244
KflI	GGGWCCC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	51, 312
LpnPI	CCDG	9 cut(s)	4, 28, 45, 227, 243, 333, 335, 398, 419
Lsp1109I	GCAGC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	451
MaeII	ACGT	1 cut(s)	233
MalI	GATC	2 cut(s)	53, 314
MboI	GATC	2 cut(s)	51, 312
MboII	GAAGA	2 cut(s)	293, 293
MlsI	TGGCCA	1 cut(s)	46
MluCI	AATT	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	46
Mly113I	GGCGCC	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	89
Mox20I	TGGCCA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	46
MseI	TTAA	2 cut(s)	365, 380
Msp20I	TGGCCA	1 cut(s)	46
MspI	CCGG	2 cut(s)	32, 322
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	300
NarI	GGCGCC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	51, 312
NlaIII	CATG	2 cut(s)	114, 344
NlaIV	GGNNCC	4 cut(s)	181, 246, 438, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	90, 307, 327
PkrI	GCNGC	3 cut(s)	98, 249, 252
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
PspN4I	GGNNCC	4 cut(s)	181, 246, 438, 439
PspPI	GGNCC	3 cut(s)	21, 179, 437
PspPPI	RGGWCCY	1 cut(s)	437
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	365, 380
SatI	GCNGC	3 cut(s)	97, 248, 251
Sau3AI	GATC	2 cut(s)	51, 312
Sau96I	GGNCC	3 cut(s)	21, 179, 437
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	7 cut(s)	66, 188, 216, 236, 265, 279, 320
SfoI	GGCGCC	1 cut(s)	246
SinI	GGWCC	3 cut(s)	21, 179, 437
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	3 cut(s)	94, 248, 251
SspDI	GGCGCC	1 cut(s)	244
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	13, 208
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	4 cut(s)	15, 36, 78, 279
TasI	AATT	1 cut(s)	155
TauI	GCSGC	2 cut(s)	250, 253
TfiI	GAWTC	3 cut(s)	90, 307, 327
Tru1I	TTAA	2 cut(s)	365, 380
Tru9I	TTAA	2 cut(s)	365, 380
TscAI	CASTG	2 cut(s)	54, 246
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	54, 246
VpaK11BI	GGWCC	3 cut(s)	21, 179, 437
XapI	RAATTY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	2 cut(s)	15, 210
XspI	CTAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.